ViewGene

Locus Name:
GeneID:
Location:

GeneID:772
TrivialName: PA14_48030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48030
PAO1 Ortholog Locus:PA1251
Sequence Length:1626
Protein Length:541
Start: 4275245
Stop: 4276870
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04640.1|AE004554_8 (AE004554) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
Identities = 536/541 (99%), Positives = 538/541 (99%)
Sequence:
ATGCTTCTTCGTCGTATCGCCATCACCCCACGCGCCGTCATCGGCTTCGCCATCCTCGCCTCGCTGCTGGTG
GCGCTCGGCCTCTTCGCGCACAACCGCATGGGTTCGCTGAACCGCGCCGCCAGGGATATCGGCGAAGTCTGG
CTGCCCAGCGTCGAAGCCTCGGCCCAGCTCAGCGGCCTGATGAGCGAACTGCGCCTCGGCGAGATGAACCAC
GTGCTGCTGCACGACGCCACGCGCATGCGCCAGCAGGAACAACGGATGGACGAGGTCATCGCTACCCTCGCC
AGGGTGGAAAGGGAATACCGCCCCTTGCTGGTCCTGGACGAGGAGCGCGCGTTGCTCGACCAGTTCGTCCAG
CGCCAGCAGGAATACCTCGAAGGACACGCCGCCCTGCTCGCGCTGTCCCGTGACAACCGTACCGACGAAGCC
AGCGTGCTGATGGGCGGGGCCCAGTTGCAGCGCTACGAGCAGGTGCAGCGGACCCTGAAGCAACTCATCGCC
CTCGACCGCGAGGCCGCCCGCGCCTCCACCGCCGAAGCCGCCGATGTCTACTCCCGGGCCTCCACCGCGATC
CTCGCGGTGCTGCTGGTGGCCCTGGCGGCCAGCGTGACGATCGCCTGGCTGCTAACCCGCAGCATCGTCGTG
CCGATCCGCCAGGCGGTGTCCTGCGCCGACCGCATCGCGGCCCGCGACCTGACCGGCGAGATCGCCAGCGAC
GGCGACGACGAGCCGGCGCAACTGATGAAGGCCATGCGCAGCATGCAGGCCAGCCTGCACGACACCATCGAG
CAGATCGGCGATTCCGCCGCGCTGCTGGCCGCCGCTGCCGAGCAACTGAACGCGGTGACCGAGGAAGGCAAC
CGGTCGCTGGCCCGGCAGAACGATGAGATCGAGATGGCCGCCACCGCGGTCAACGAAATGAGCGCGGCGGTC
GAGGAGGTCGCGCGCAACGCCAGCTCCACCGCCGAGGCCTCCAGTCTCTCGGAACGGGCCGCCGGCAACGGC
CGCGCACGGGTCGAACAGACCGTCCGCTCGATCCGTCAGATGAACGCCGAGATCGGCCAGACCGCGCGCCTG
GTGGAAGGCCTGGCCAGCCAGGCGCAGGACATCGGCAAGGTGCTCGACGTGATCCGCGCCATCGCCGAGCAG
ACCAACCTCCTCGCCCTCAATGCCGCCATCGAGGCCGCCCGCGCCGGCGAGCAGGGCCGCGGATTCGCGGTG
GTCGCCGACGAAGTGCGCGCCCTCGCCCACCGCACCCAGCAATCGACCCATGAGATCGAAGGCATGATCGCC
AGCGTCCGCGAGGGCACCGACACCGCGGTGTCCGCGATGCGCGAGAACGACCAGCGCGCCCGGCAGATGCTC
GACGAGGCCGAGGCCGCCGACCACGCCCTGGGCGAGATCGCCGAGCACGCCACGCGGATCAACGAGCGCACC
CTGGTGATCGCCAGCGCTGCCGAGGAGCAGGCCCACGTCGCCCGCGAGGTCGATCGCAACCTGGTGAACATC
CGCGACGTTGCCGTGCAGACCACCCAGGGCGCCGAGCAGACCCGCGGCGCCAGCCACGAGCTGTCGCGCCTG
GCCAACGACCTCAAGAGCATGATCGGTCGCTTCGTGGTCTGA
Translation:
MLLRRIAITPRAVIGFAILASLLVALGLFAHNRMGSLNRAARDIGEVWLPSVEASAQLSGLMSELRLGEMNH
VLLHDATRMRQQEQRMDEVIATLARVEREYRPLLVLDEERALLDQFVQRQQEYLEGHAALLALSRDNRTDEA
SVLMGGAQLQRYEQVQRTLKQLIALDREAARASTAEAADVYSRASTAILAVLLVALAASVTIAWLLTRSIVV
PIRQAVSCADRIAARDLTGEIASDGDDEPAQLMKAMRSMQASLHDTIEQIGDSAALLAAAAEQLNAVTEEGN
RSLARQNDEIEMAATAVNEMSAAVEEVARNASSTAEASSLSERAAGNGRARVEQTVRSIRQMNAEIGQTARL
VEGLASQAQDIGKVLDVIRAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQQSTHEIEGMIA
SVREGTDTAVSAMRENDQRARQMLDEAEAADHALGEIAEHATRINERTLVIASAAEEQAHVAREVDRNLVNI
RDVAVQTTQGAEQTRGASHELSRLANDLKSMIGRFVV*
AnnotationID:781GeneID:772
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 10:10:32
Gene Name:
Confidence Code:3
GeneProduct:putative methyl-accepting chemotaxis transducer
Cell Localization:()
Synonyms:PA1251
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0840,smart00283,pfam00015
Secondary Functional Category(ies):cell motility and secretion
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN65948.1|AE016223_2 (AE016775) methyl-accepting chemotaxis transducer [Pseudomonas
           putida KT2440]
          Length = 541

 Score =  470 bits (1210), Expect = e-132
 Identities = 262/539 (48%), Positives = 366/539 (67%)

>gb|AAO54010.1| (AE016857) methyl-accepting chemotaxis protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 541

 Score =  441 bits (1133), Expect = e-123
 Identities = 254/545 (46%), Positives = 358/545 (65%), Gaps = 8/545 (1%)

Structural Features:
COG0840, Tar, Methyl-accepting chemotaxis protein 
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 408 residues,  99.5% aligned
Score =  175 bits (443), Expect = 1e-44
Identities = 137/409 (33%), Positives = 212/409 (51%), Gaps = 3/409 (0%)

smart00283, MA, Methyl-accepting chemotaxis-like domains 
(chemotaxis sensory transducer).
CD-Length = 262 residues,  99.6% aligned
Score =  164 bits (416), Expect = 3e-41
Identities = 103/261 (39%), Positives = 150/261 (57%)

pfam00015, MCPsignal, Methyl-accepting chemotaxis protein (MCP) signaling domain.
CD-Length = 251 residues,  98.8% aligned
Score =  150 bits (380), Expect = 4e-37
Identities = 90/248 (36%), Positives = 141/248 (56%)
Genomic Context:
Comment:
ReferenceID:1547
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18689
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37543
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:772_cdd.html
URL:
Homologs By Global Alignment
Gene ID:772

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1355 PA1251_tr translation of PA1251 541 99.07 99.44 0 2569.0
49976 gb|AAG04640.1|AE004554_8 (AE004554) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1] 541 99.07 99.44 0 2569.0
1356 PA1608_tr translation of PA1608 541 56.00 72.45 0 1399.0
49977 gb|AAG04997.1|AE004588_10 (AE004588) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1] 541 56.00 72.45 0 1399.0
49978 gb|AAN65948.1|AE016223_2 (AE016775) methyl-accepting chemotaxis transducer [Pseudomonas putida KT2440] 543 48.61 68.13 4 1208.0
GC ORFID: 43774How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1251Glimmer Score:
Start: 678664Stop: 677039
Length: 1626
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1251 translation of PA1251Homolog Bit Score 994.0
Other Homologs: t_PA1608 (ORF: BLASTX 543.0), psyr_15may02_Scaffold11_revised_gene1792 (ORF: BLASTX 400.0), psyr_15may02_Scaffold9_revised_gene8178 (ORF: BLASTX 394.0), psyr_15may02_Scaffold10_revised_gene1600 (ORF: BLASTX 389.0), psyr_15may02_Scaffold4_revised_gene5598 (ORF: BLASTX 382.0), psyr_15may02_Scaffold13_revised_gene2252 (ORF: BLASTX 365.0), psyr_15may02_Scaffold1_revised_gene1081 (ORF: BLASTX 365.0), psyr_15may02_Scaffold3_revised_gene4244 (ORF: BLASTX 343.0), psyr_15may02_Scaffold3_revised_gene4926 (ORF: BLASTX 335.0), t_PA1251 (ORF: GLIMMER)
GC ORF Sequence
ATGCTTCTTCGTCGTATCGCCATCACCCCACGCGCCGTCATCGGCTTCGCCATCCTCGCCTCGCTGCTGGTG
GCGCTCGGCCTCTTCGCGCACAACCGCATGGGTTCGCTGAACCGCGCCGCCAGGGATATCGGCGAAGTCTGG
CTGCCCAGCGTCGAAGCCTCGGCCCAGCTCAGCGGCCTGATGAGCGAACTGCGCCTCGGCGAGATGAACCAC
GTGCTGCTGCACGACGCCACGCGCATGCGCCAGCAGGAACAACGGATGGACGAGGTCATCGCTACCCTCGCC
AGGGTGGAAAGGGAATACCGCCCCTTGCTGGTCCTGGACGAGGAGCGCGCGTTGCTCGACCAGTTCGTCCAG
CGCCAGCAGGAATACCTCGAAGGACACGCCGCCCTGCTCGCGCTGTCCCGTGACAACCGTACCGACGAAGCC
AGCGTGCTGATGGGCGGGGCCCAGTTGCAGCGCTACGAGCAGGTGCAGCGGACCCTGAAGCAACTCATCGCC
CTCGACCGCGAGGCCGCCCGCGCCTCCACCGCCGAAGCCGCCGATGTCTACTCCCGGGCCTCCACCGCGATC
CTCGCGGTGCTGCTGGTGGCCCTGGCGGCCAGCGTGACGATCGCCTGGCTGCTAACCCGCAGCATCGTCGTG
CCGATCCGCCAGGCGGTGTCCTGCGCCGACCGCATCGCGGCCCGCGACCTGACCGGCGAGATCGCCAGCGAC
GGCGACGACGAGCCGGCGCAACTGATGAAGGCCATGCGCAGCATGCAGGCCAGCCTGCACGACACCATCGAG
CAGATCGGCGATTCCGCCGCGCTGCTGGCCGCCGCTGCCGAGCAACTGAACGCGGTGACCGAGGAAGGCAAC
CGGTCGCTGGCCCGGCAGAACGATGAGATCGAGATGGCCGCCACCGCGGTCAACGAAATGAGCGCGGCGGTC
GAGGAGGTCGCGCGCAACGCCAGCTCCACCGCCGAGGCCTCCAGTCTCTCGGAACGGGCCGCCGGCAACGGC
CGCGCACGGGTCGAACAGACCGTCCGCTCGATCCGTCAGATGAACGCCGAGATCGGCCAGACCGCGCGCCTG
GTGGAAGGCCTGGCCAGCCAGGCGCAGGACATCGGCAAGGTGCTCGACGTGATCCGCGCCATCGCCGAGCAG
ACCAACCTCCTCGCCCTCAATGCCGCCATCGAGGCCGCCCGCGCCGGCGAGCAGGGCCGCGGATTCGCGGTG
GTCGCCGACGAAGTGCGCGCCCTCGCCCACCGCACCCAGCAATCGACCCATGAGATCGAAGGCATGATCGCC
AGCGTCCGCGAGGGCACCGACACCGCGGTGTCCGCGATGCGCGAGAACGACCAGCGCGCCCGGCAGATGCTC
GACGAGGCCGAGGCCGCCGACCACGCCCTGGGCGAGATCGCCGAGCACGCCACGCGGATCAACGAGCGCACC
CTGGTGATCGCCAGCGCTGCCGAGGAGCAGGCCCACGTCGCCCGCGAGGTCGATCGCAACCTGGTGAACATC
CGCGACGTTGCCGTGCAGACCACCCAGGGCGCCGAGCAGACCCGCGGCGCCAGCCACGAGCTGTCGCGCCTG
GCCAACGACCTCAAGAGCATGATCGGTCGCTTCGTGGTCTGA