ViewGene
Locus Name:
GeneID:
Location:

GeneID:771
TrivialName: PA14_69220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69220
PAO1 Ortholog Locus:PA5241
Sequence Length:1521
Protein Length:506
Start: 6173092
Stop: 6174612
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAD29107.1|AF053463_1 (AF053463) exopolyphosphatase; PPX [Pseudomonas aeruginosa]
Identities = 506/506 (100%), Positives = 506/506 (100%)
Sequence:
ATGGACTTGCAAAGCATGCCGCAAAAACCTGCCGAGGCATTCCCGCTGATTGCCGCCCTGGACCTGGGTTCC
AACAGTTTCCACCTCTGTCTGGCCAAGGCCAATATCCACGGCGAAGTCCGCATCCTCGAACGGCTGGGCGAG
AAGGTTCAACTGGCCGCCGGCCTCGACGAGGAGCGCAATCTCAGCGAGGAGGCCACCCAGCGTGGCCTCGAC
TGCCTACGCCGCTTCGCCCAGTTCATCAGCGGCATGCCCCAGGGTTCCGTACGCGTGGTCGCGACCAACGCC
TTGCGCGAGGCGCGCAACCGCAGCGATTTCATCCGTCGTGCGGAAGAGGTTCTCGGCCATCCCGTGGAAGTC
ATCTCCGGCCGCGAGGAAGCCCGCCTGATCTACCTCGGCGTCGCCAACAGCATGCCCGACAGCGGCGGTCGC
CGGCTGGTCAGCGACATCGGCGGCGGCAGCACCGAGTTCATCATCGGCCAGGGTTTCGAGTCCGAGCTGCGG
GAAAGCCTGCAGATGGGTTGCGTCAGCTACACCCAACGCTACTTCCGCGACGGCAAGATCACCCCGGCCCGC
TACGCCCAGGCGTACACCGCCGCACGCCTGGAACTGATGGGCATCGAGAACAGCCTGCGGCGCCTCGGCTGG
CAACAGGCGGTCGGCGCCTCCGGCACCATCCGCGCAGTGGCGCTGGCGATCAAGGCCGGCGGCCACGGCAAC
GGCGAGATAAGCCCGGACGGACTGGCCTGGCTGAAGCGCAAGGTGCTCAAGCTCGGCGACGTGGAGAAGCTC
GATCTGGAAGGGATCAAGCCGGACCGCCGGACCATCTTCCCGGCCGGACTGGCCATTCTCGAAGCGATCTTC
GACGCGCTGGAACTGGAACAGATGGTTCACTCCGAGGGCGCCCTGCGCGAAGGCGTTCTCTACGACCTGGTC
GGCCGTCACCAGCACGAGGACGTGCGCGAACGCACCATCAGTTCGCTGATGCAGCGCTACCACGTCGATCCG
GAGCAGGCTTCGCGGGTGGAGGCCAAGGCCCTCAAGGTGCTTGCCGAAGTCGGCGACGCCTGGGAGCTGAAC
GACGAACTGCACCGCGACCTGCTGAGCTGGGGCGCACGGGTCCACGAGATCGGCCTGGACATTGCCCATTAC
CACTACCACAAGCACGGCGCCTACCTGATCGAGCACTCCGACCTGGCTGGCTTCTCGCGCCAGGACCAGCAG
ATGCTGTCGCTACTGGTACGCGGCCACCGCCGCAACATTCCGGCGGACAAGCTGGCGGAGTTCGCCGCGGAA
GGCGACAAGCTGGTGCGCCTGTGCATCGTGCTGCGCTTCGCGATCCTCTTCCACCACATTCGCGGCACCCAG
GAAATGCCCTCGGTGCGCCTGAAGGCAGAGCCCAAGAGCCTTTCGGTGACCTTCCCCGAGGGCTGGCTGGAA
GCCAACCCGCTGACCCAGGCCGACTTCGCCCAGGAAGCCGAATGGCTCAAGCGGGTCGGCTACAGCCTCAAC
GTGCGGTAA
Translation:
MDLQSMPQKPAEAFPLIAALDLGSNSFHLCLAKANIHGEVRILERLGEKVQLAAGLDEERNLSEEATQRGLD
CLRRFAQFISGMPQGSVRVVATNALREARNRSDFIRRAEEVLGHPVEVISGREEARLIYLGVANSMPDSGGR
RLVSDIGGGSTEFIIGQGFESELRESLQMGCVSYTQRYFRDGKITPARYAQAYTAARLELMGIENSLRRLGW
QQAVGASGTIRAVALAIKAGGHGNGEISPDGLAWLKRKVLKLGDVEKLDLEGIKPDRRTIFPAGLAILEAIF
DALELEQMVHSEGALREGVLYDLVGRHQHEDVRERTISSLMQRYHVDPEQASRVEAKALKVLAEVGDAWELN
DELHRDLLSWGARVHEIGLDIAHYHYHKHGAYLIEHSDLAGFSRQDQQMLSLLVRGHRRNIPADKLAEFAAE
GDKLVRLCIVLRFAILFHHIRGTQEMPSVRLKAEPKSLSVTFPEGWLEANPLTQADFAQEAEWLKRVGYSLN
VR*
AnnotationID:780GeneID:771
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 14:02:32
Gene Name:ppx
Confidence Code:1
GeneProduct:exopolyphosphatase
Cell Localization:()
Synonyms:gppA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0248,pfam02541
Secondary Functional Category(ies):transport of small molecules
EC Number:3.6.1.11
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58675.1| (AE016875) exopolyphosphatase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 500

 Score =  769 bits (1985), Expect = 0.0
 Identities = 375/501 (74%), Positives = 438/501 (87%), Gaps = 1/501 (0%)

>gb|AAN70781.1|AE016722_2 (AE016793) exopolyphosphatase [Pseudomonas putida KT2440]
          Length = 500

 Score =  754 bits (1947), Expect = 0.0
 Identities = 370/501 (73%), Positives = 432/501 (86%), Gaps = 1/501 (0%)

>gb|AAM40270.1| (AE012194) exopolyphosphatase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 508

 Score =  408 bits (1049), Expect = e-113
 Identities = 219/505 (43%), Positives = 323/505 (63%), Gaps = 10/505 (1%)






 
Structural Features:
COG0248, GppA, Exopolyphosphatase 
[Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
CD-Length = 492 residues,  99.6% aligned
Score =  467 bits (1204), Expect = 1e-132
Identities = 217/492 (44%), Positives = 305/492 (61%), Gaps = 9/492 (1%)

pfam02541, Ppx-GppA, Ppx/GppA phosphatase family. 
CD-Length = 285 residues,  97.5% aligned
Score =  236 bits (604), Expect = 4e-63
Identities = 121/279 (43%), Positives = 176/279 (63%), Gaps = 2/279 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1545




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18687




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34857




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:771_cdd.html


    		




 
URL:

















    ReferenceID:35746




  
Author/Investigator(s):
        Miyake T, Shiba T, Kameda A, Ihara Y, Munekata M, Ishige K, Noguchi T.





  
Title:
        The gene for an exopolyphosphatase of Pseudomonas aeruginosa.




  
PubMed:
        10382967


MedLine:
        




    
Source:
DNA Res. 1999 Apr 30;6(2):103-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10382967









           
Homologs By Global Alignment 

           

       



     
Gene ID:771
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
49928
                           gb|AAD29107.1|AF053463_1
                           (AF053463) exopolyphosphatase; PPX [Pseudomonas aeruginosa]
                           506
                           99.99
                           99.99
                           0
                           2585.0
     

     
     
1354
                           PA5241_tr
                           translation of PA5241
                           506
                           99.60
                           99.60
                           0
                           2573.0
     

     
     
49929
                           gb|AAG08626.1|AE004936_9
                           (AE004936) exopolyphosphatase [Pseudomonas aeruginosa PAO1]
                           506
                           99.60
                           99.60
                           0
                           2573.0
     

     
     
49930
                           dbj|BAA74460.1|
                           (AB022715) exopolyphosphatase [Pseudomonas aeruginosa]
                           506
                           99.60
                           99.60
                           0
                           2573.0
     

     
     
49931
                           gb|AAO58675.1|
                           (AE016875) exopolyphosphatase [Pseudomonas syringae pv. tomato str. DC3000]
                           506
                           74.11
                           86.56
                           6
                           1987.0
     

     






      

          
GC ORFID: 43773How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5241Glimmer Score: 

          
Start: 5436779Stop: 5438299

          
Length: 1521


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5241 translation of PA5241Homolog Bit Score 995.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3875 (ORF: BLASTX 772.0), t_PA5241 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACTTGCAAAGCATGCCGCAAAAACCTGCCGAGGCATTCCCGCTGATTGCCGCCCTGGACCTGGGTTCC 
AACAGTTTCCACCTCTGTCTGGCCAAGGCCAATATCCACGGCGAAGTCCGCATCCTCGAACGGCTGGGCGAG 
AAGGTTCAACTGGCCGCCGGCCTCGACGAGGAGCGCAATCTCAGCGAGGAGGCCACCCAGCGTGGCCTCGAC 
TGCCTACGCCGCTTCGCCCAGTTCATCAGCGGCATGCCCCAGGGTTCCGTACGCGTGGTCGCGACCAACGCC 
TTGCGCGAGGCGCGCAACCGCAGCGATTTCATCCGTCGTGCGGAAGAGGTTCTCGGCCATCCCGTGGAAGTC 
ATCTCCGGCCGCGAGGAAGCCCGCCTGATCTACCTCGGCGTCGCCAACAGCATGCCCGACAGCGGCGGTCGC 
CGGCTGGTCAGCGACATCGGCGGCGGCAGCACCGAGTTCATCATCGGCCAGGGTTTCGAGTCCGAGCTGCGG 
GAAAGCCTGCAGATGGGTTGCGTCAGCTACACCCAACGCTACTTCCGCGACGGCAAGATCACCCCGGCCCGC 
TACGCCCAGGCGTACACCGCCGCACGCCTGGAACTGATGGGCATCGAGAACAGCCTGCGGCGCCTCGGCTGG 
CAACAGGCGGTCGGCGCCTCCGGCACCATCCGCGCAGTGGCGCTGGCGATCAAGGCCGGCGGCCACGGCAAC 
GGCGAGATAAGCCCGGACGGACTGGCCTGGCTGAAGCGCAAGGTGCTCAAGCTCGGCGACGTGGAGAAGCTC 
GATCTGGAAGGGATCAAGCCGGACCGCCGGACCATCTTCCCGGCCGGACTGGCCATTCTCGAAGCGATCTTC 
GACGCGCTGGAACTGGAACAGATGGTTCACTCCGAGGGCGCCCTGCGCGAAGGCGTTCTCTACGACCTGGTC 
GGCCGTCACCAGCACGAGGACGTGCGCGAACGCACCATCAGTTCGCTGATGCAGCGCTACCACGTCGATCCG 
GAGCAGGCTTCGCGGGTGGAGGCCAAGGCCCTCAAGGTGCTTGCCGAAGTCGGCGACGCCTGGGAGCTGAAC 
GACGAACTGCACCGCGACCTGCTGAGCTGGGGCGCACGGGTCCACGAGATCGGCCTGGACATTGCCCATTAC 
CACTACCACAAGCACGGCGCCTACCTGATCGAGCACTCCGACCTGGCTGGCTTCTCGCGCCAGGACCAGCAG 
ATGCTGTCGCTACTGGTACGCGGCCACCGCCGCAACATTCCGGCGGACAAGCTGGCGGAGTTCGCCGCGGAA 
GGCGACAAGCTGGTGCGCCTGTGCATCGTGCTGCGCTTCGCGATCCTCTTCCACCACATTCGCGGCACCCAG 
GAAATGCCCTCGGTGCGCCTGAAGGCAGAGCCCAAGAGCCTTTCGGTGACCTTCCCCGAGGGCTGGCTGGAA 
GCCAACCCGCTGACCCAGGCCGACTTCGCCCAGGAAGCCGAATGGCTCAAGCGGGTCGGCTACAGCCTCAAC 
GTGCGGTAA