ViewGene
Locus Name:
GeneID:
Location:

GeneID:770
TrivialName: PA14_01250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01250
PAO1 Ortholog Locus:PA0103
Sequence Length:1572
Protein Length:523
Start: 122725
Stop: 124296
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03493.1|AE004449_2 (AE004449) probable sulfate transporter [Pseudomonas aeruginosa PAO1]
Identities = 521/523 (99%), Positives = 521/523 (99%)
Sequence:
ATGCATGTTTCAAAGGTGTTTCCGTCCCTCCGGGACACGTTGCCGCGGGACCTGATGGCCTCCGTGGTGGTG
TTCCTCGTCGCCCTGCCGCTGTGCATGGGCATCGCCATCGCCTCCGGGATGCCGCCGGCCAAGGGCCTGCTC
ACCGGCATCGTCGGTGGCCTGGTGGTCGGCTTCCTGGCCGGCTCGCCGCTACAGGTCAGCGGCCCGGCGGCC
GGCCTCGCGGTGCTGGTCTTCGAACTGGTGCGTACCTACGGGGTGGCCATGCTCGGGCCGATCCTGCTGCTC
GCCGGCGCCATCCAGCTGCTCGCCGGGCGGCTGCGCCTGGGCTGCTGGTTCCGGGTCACCTCGCCGGCGGTG
GTATACGGGATGCTCGCCGGCATCGGCATCCTCATCGTCCTTTCGCAATTGCACGTGATGCTCGACCTGGCG
CCCAAGGCGTCCGGCCTCGACAACCTGCTGGCATTCCCCCAGGCGGCGTTCGCCGCGCTCGGTTCGCTGGGC
ATGGACAGCGGCCTCGACGCGGCGCTGCTCGGGCTGGGCACCATCGCGGTGATGTGGGGCTGGGACAAGCTG
CGTCCGCAACGCCTGCGCTTCCTACCCGGCGCGCTGCTCGGCGTGAGCCTGGCGACCCTGGCCAGCCTCTGG
CTGGCGCTGGACGTGCGACGGGTCGAGGTACCGGCCAACCTCGGCGAGGCCATCGACTGGCTACGCCCGGTC
GACCTGCTGGCCCTGGCCGATCCCTCCCTGCTGCTGGCGGCGGTGGTGGTGGCCTTCATCGCCAGTGCGGAG
ACCCTGCTCTCGGCGGCGGCGGTGGATCGCCTGCACGACGGCCCGCGCTCGGACATGGATCGCGAGTTGTCC
GCCCAGGGGGTCGGCAACATGCTCTGCGGCCTGCTCGGCGCGCTGCCGATGACCGGGGTGATCGTACGCAGC
TCGGCCAACGTCAACGCCGGTGCGCGAACCCGCGCCTCGGCGATCTTCCACGGCCTCTGGTTGCTCGCCTTC
GTCCTCCTGCTCGGCAGCCTGCTGCGGCAGATTCCGGTGGCGAGCCTGGCCGGGGTGCTGGTCTATACCGGG
GTCAAGCTGGTCGATTTCAAGGCCCTCGGCAACCTCTCTCGCTACGGCCGGATGCCGATGCTGGTGTACGCG
GCCACCGCCCTGGCCATCGTCTTCACCGACCTGCTGACCGGCGTGCTGGTGGGCTTCGCCCTGACCCTGCTG
AAGCTGGTGCTGAAGGCGGCGCGGCTGAAGATCGCCCTGCGCTACACCGGCGAGCATGAAGCCGAGCTGCGC
CTGAGCGGCGCCGCGACTTTCCTCAAGGTGCCGGCGCTGTCGCGGGTGCTCGACGAGGTCAAGCCGGGGACC
ACCCTGCACGTACCGATGGATAACCTCAGCTATGTCGACCATGCCTGCATGGAGCTGCTCGAGGATTGGGGG
CGGATGGCACCGGTGCAGGGCTCGCGCCTGGTGATCGAACCGCGCGCCTTGAAGCGTCGCCTGGAAGGGCGC
CTGCGCGGCAGCGTCGGGTTGGGCGGCGCGCGCAATGGCGGGGCGGTCAGCCCAGGCTGA
Translation:
MHVSKVFPSLRDTLPRDLMASVVVFLVALPLCMGIAIASGMPPAKGLLTGIVGGLVVGFLAGSPLQVSGPAA
GLAVLVFELVRTYGVAMLGPILLLAGAIQLLAGRLRLGCWFRVTSPAVVYGMLAGIGILIVLSQLHVMLDLA
PKASGLDNLLAFPQAAFAALGSLGMDSGLDAALLGLGTIAVMWGWDKLRPQRLRFLPGALLGVSLATLASLW
LALDVRRVEVPANLGEAIDWLRPVDLLALADPSLLLAAVVVAFIASAETLLSAAAVDRLHDGPRSDMDRELS
AQGVGNMLCGLLGALPMTGVIVRSSANVNAGARTRASAIFHGLWLLAFVLLLGSLLRQIPVASLAGVLVYTG
VKLVDFKALGNLSRYGRMPMLVYAATALAIVFTDLLTGVLVGFALTLLKLVLKAARLKIALRYTGEHEAELR
LSGAATFLKVPALSRVLDEVKPGTTLHVPMDNLSYVDHACMELLEDWGRMAPVQGSRLVIEPRALKRRLEGR
LRGSVGLGGARNGGAVSPG*
AnnotationID:779GeneID:770
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 18:06:50
Gene Name:
Confidence Code:3
GeneProduct:putative sulfate transporter
Cell Localization:()
Synonyms:ychM
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0659,pfam00916
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65735.1|AE016199_7 (AE016774) sulfate transporter, putative [Pseudomonas putida
           KT2440]
          Length = 505

 Score =  748 bits (1932), Expect = 0.0
 Identities = 386/504 (76%), Positives = 433/504 (85%), Gaps = 1/504 (0%)

>gb|AAO58682.1| (AE016875) sulfate transporter family protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 510

 Score =  727 bits (1876), Expect = 0.0
 Identities = 369/504 (73%), Positives = 428/504 (84%), Gaps = 4/504 (0%)

>gb|AAM40826.1| (AE012254) sulfate transporter [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 519

 Score =  570 bits (1468), Expect = e-161
 Identities = 302/491 (61%), Positives = 364/491 (74%), Gaps = 5/491 (1%)








 
Structural Features:
COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) 
[Inorganic ion transport and metabolism]
CD-Length = 554 residues,  94.0% aligned
Score =  312 bits (800), Expect = 8e-86
Identities = 180/533 (33%), Positives = 261/533 (48%), Gaps = 36/533 (6%)

pfam00916, Sulfate_transp, Sulfate transporter family.
CD-Length = 312 residues,  99.4% aligned
Score =  149 bits (377), Expect = 1e-36
Identities = 100/312 (32%), Positives = 153/312 (49%), Gaps = 5/312 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1543




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18685




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33439




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:770_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:770
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1353
                           PA0103_tr
                           translation of PA0103
                           523
                           99.61
                           99.61
                           0
                           2576.0
     

     
     
49918
                           gb|AAG03493.1|AE004449_2
                           (AE004449) probable sulfate transporter [Pseudomonas aeruginosa PAO1]
                           523
                           99.61
                           99.61
                           0
                           2576.0
     

     
     
49919
                           gb|AAN65735.1|AE016199_7
                           (AE016774) sulfate transporter, putative [Pseudomonas putida KT2440]
                           524
                           73.66
                           82.63
                           20
                           1934.0
     

     
     
49920
                           gb|AAO58682.1|
                           (AE016875) sulfate transporter family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           525
                           70.85
                           82.47
                           17
                           1874.0
     

     
     
49921
                           gb|AAM40826.1|
                           (AE012254) sulfate transporter [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           538
                           57.43
                           69.51
                           34
                           1465.0
     

     






      

          
GC ORFID: 43772How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0103Glimmer Score: 

          
Start: 5924064Stop: 5925635

          
Length: 1572


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0103 translation of PA0103Homolog Bit Score 996.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3881 (ORF: BLASTX 729.0), t_PA0103 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATGTTTCAAAGGTGTTTCCGTCCCTCCGGGACACGTTGCCGCGGGACCTGATGGCCTCCGTGGTGGTG 
TTCCTCGTCGCCCTGCCGCTGTGCATGGGCATCGCCATCGCCTCCGGGATGCCGCCGGCCAAGGGCCTGCTC 
ACCGGCATCGTCGGTGGCCTGGTGGTCGGCTTCCTGGCCGGCTCGCCGCTACAGGTCAGCGGCCCGGCGGCC 
GGCCTCGCGGTGCTGGTCTTCGAACTGGTGCGTACCTACGGGGTGGCCATGCTCGGGCCGATCCTGCTGCTC 
GCCGGCGCCATCCAGCTGCTCGCCGGGCGGCTGCGCCTGGGCTGCTGGTTCCGGGTCACCTCGCCGGCGGTG 
GTATACGGGATGCTCGCCGGCATCGGCATCCTCATCGTCCTTTCGCAATTGCACGTGATGCTCGACCTGGCG 
CCCAAGGCGTCCGGCCTCGACAACCTGCTGGCATTCCCCCAGGCGGCGTTCGCCGCGCTCGGTTCGCTGGGC 
ATGGACAGCGGCCTCGACGCGGCGCTGCTCGGGCTGGGCACCATCGCGGTGATGTGGGGCTGGGACAAGCTG 
CGTCCGCAACGCCTGCGCTTCCTACCCGGCGCGCTGCTCGGCGTGAGCCTGGCGACCCTGGCCAGCCTCTGG 
CTGGCGCTGGACGTGCGACGGGTCGAGGTACCGGCCAACCTCGGCGAGGCCATCGACTGGCTACGCCCGGTC 
GACCTGCTGGCCCTGGCCGATCCCTCCCTGCTGCTGGCGGCGGTGGTGGTGGCCTTCATCGCCAGTGCGGAG 
ACCCTGCTCTCGGCGGCGGCGGTGGATCGCCTGCACGACGGCCCGCGCTCGGACATGGATCGCGAGTTGTCC 
GCCCAGGGGGTCGGCAACATGCTCTGCGGCCTGCTCGGCGCGCTGCCGATGACCGGGGTGATCGTACGCAGC 
TCGGCCAACGTCAACGCCGGTGCGCGAACCCGCGCCTCGGCGATCTTCCACGGCCTCTGGTTGCTCGCCTTC 
GTCCTCCTGCTCGGCAGCCTGCTGCGGCAGATTCCGGTGGCGAGCCTGGCCGGGGTGCTGGTCTATACCGGG 
GTCAAGCTGGTCGATTTCAAGGCCCTCGGCAACCTCTCTCGCTACGGCCGGATGCCGATGCTGGTGTACGCG 
GCCACCGCCCTGGCCATCGTCTTCACCGACCTGCTGACCGGCGTGCTGGTGGGCTTCGCCCTGACCCTGCTG 
AAGCTGGTGCTGAAGGCGGCGCGGCTGAAGATCGCCCTGCGCTACACCGGCGAGCATGAAGCCGAGCTGCGC 
CTGAGCGGCGCCGCGACTTTCCTCAAGGTGCCGGCGCTGTCGCGGGTGCTCGACGAGGTCAAGCCGGGGACC 
ACCCTGCACGTACCGATGGATAACCTCAGCTATGTCGACCATGCCTGCATGGAGCTGCTCGAGGATTGGGGG 
CGGATGGCACCGGTGCAGGGCTCGCGCCTGGTGATCGAACCGCGCGCCTTGAAGCGTCGCCTGGAAGGGCGC 
CTGCGCGGCAGCGTCGGGTTGGGCGGCGCGCGCAATGGCGGGGCGGTCAGCCCAGGCTGA