ViewGene
Locus Name:
GeneID:
Location:

GeneID:769
TrivialName: PA14_00340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00340
PAO1 Ortholog Locus:PA0029
Sequence Length:1554
Protein Length:517
Start: 32076
Stop: 30523
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03419.1|AE004442_6 (AE004442) probable sulfate transporter [Pseudomonas aeruginosa PAO1]
Identities = 512/517 (99%), Positives = 513/517 (99%)
Sequence:
ATGTGGACGCGCCTGCTGCCGTTCCTCGCCTGGCTACCGGGGCTACGCCGGGGCACGCTCAGGCGCGAGGCC
TGGGTCGGCCTGAATGGCGCGATCCTGGCACTGCCGCAATCGATGGCCTATGCGCTGATCGCCGGCCTGCCA
GCGGAGTACGGCCTGTACGCGGCGATGCTGCCAGTGGCGATCGCCTGCCTGTGGGGCTCGTCGCGCTACCTG
GTGAGCGGTCCCACCGCGGCGATCTCGGTGCTGCTGTTCAGTTCGGTGGCCCCCCTGGCGCCGCTGGGCAGC
CCGCAATACGTCCAGGCCGTGCTGCTGCTGACCTTTCTCGCCGGCGCCTTCCAGTGGCTGCTCGGCGTCCTG
CGCGTCGGGTCGCTGGTCAATTTCGTCTCGCATTCGGTGATGCTCGGCTTCACCCTTGGCGCGGCGCTGCTG
ATCGTCCTCGGCCAACTGCCCTATCTTCTCGGCCTGGCCGCGAGCGGGGAGGGCGCAGCGCCGGGAAACGGC
TGGCGGCTGCTGGCGCGGTTCGCCGAGTTCGATGGCCCATCGCTGCTGGTGGGCGGCTTCAGCTTCGCGCTC
AGCCTGCTGGTCAGGCGCCTCCGACCGCGCTGGCCGGCCCTGCTGCTTGGCTTGCTGGGCGGTGCCACGCTG
GTCTGGGCGCTACCCGGGACCTTCGCCTCGGTAGCCCATGTGCAGGCCTTATCGAGTGCACTGCCGGGTTGG
AATCCGCTGGTCTTCGATTCCCGATCGATCCTCGACCTGCTACCTGCGGCGGTGGCCTGCGGCATGCTCGGG
CTGGTCACCAGCCTGTCGATCGCCCGCGCCCTGGCCGCGCGCCAGGGAGACGCGTTCGATGCCAACCAGGAG
GTCCGCGCCCAGGGTCTGTCGAACCTGCTCGGGCCTTGGCTGTCGGCGAGCCTGTCGGCGGGTTCCTTCACC
CGCTCCGGGCTCAATCTGGAAGCCGGTGCGCGCTCCCCGCTGGCGGGTGCGTTTTCGGCGCTCTGGGTGGCC
CTGCTGGCCGTGCTCGGTGCGCGCCTGATCGAGCATGTACCGTTGCCGGCGATGGCCGCAGGCATCCTGCTG
ATCGCCTGGGGCCTGATCGACCGCCCGGCGCTCCGCGCGCTCTACCGCAGCGGCCGCGCCGAATGCCTGGTG
GCCGGCCTAACCGCCCTGGCCACGCTGCTGTTGCCGCTGCAGAACGCCATCTACGCGGGAGTGCTGGCGTCG
CTGTTCTTCTACCTGCGGCGCACCTCGACACCACGCGTACTGCGCCAGCGCAACGACGAGGAAGAGGTGCTG
CGCATCGAAGGCTCGATCTTCTTCGGCGCCTGCGACTACCTGCAACGCCTCATGCGCCAATGCGACAGGCCA
CGGCTGGTGCTGGACGCCCGCCAGGTGAACTTCATCGACTTCGCCGGCGCAGTGCTGTTGCAGCAGGAAGCC
CGCCGCCTGCACGCCGAGGGACGCCGCCTGGTATTGCGCCACGCTCGCCCGCAGGTCCGCGAAGCGCTGGGC
CGGCAGGCCGACGAAGGCTGCCGCCTGCACTACGAAGGCTGA
Translation:
MWTRLLPFLAWLPGLRRGTLRREAWVGLNGAILALPQSMAYALIAGLPAEYGLYAAMLPVAIACLWGSSRYL
VSGPTAAISVLLFSSVAPLAPLGSPQYVQAVLLLTFLAGAFQWLLGVLRVGSLVNFVSHSVMLGFTLGAALL
IVLGQLPYLLGLAASGEGAAPGNGWRLLARFAEFDGPSLLVGGFSFALSLLVRRLRPRWPALLLGLLGGATL
VWALPGTFASVAHVQALSSALPGWNPLVFDSRSILDLLPAAVACGMLGLVTSLSIARALAARQGDAFDANQE
VRAQGLSNLLGPWLSASLSAGSFTRSGLNLEAGARSPLAGAFSALWVALLAVLGARLIEHVPLPAMAAGILL
IAWGLIDRPALRALYRSGRAECLVAGLTALATLLLPLQNAIYAGVLASLFFYLRRTSTPRVLRQRNDEEEVL
RIEGSIFFGACDYLQRLMRQCDRPRLVLDARQVNFIDFAGAVLLQQEARRLHAEGRRLVLRHARPQVREALG
RQADEGCRLHYEG*
AnnotationID:778GeneID:769
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 13:01:39
Gene Name:
Confidence Code:3
GeneProduct:putative sulfate permease
Cell Localization:()
Synonyms:PA0029
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0659,pfam00916
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65709.1|AE016197_7 (AE016774) sulfate transporter [Pseudomonas putida KT2440]
          Length = 521

 Score =  570 bits (1470), Expect = e-162
 Identities = 306/514 (59%), Positives = 376/514 (73%), Gaps = 2/514 (0%)

>gb|AAO53722.1| (AE016856) sulfate transporter family protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 522

 Score =  567 bits (1462), Expect = e-161
 Identities = 303/514 (58%), Positives = 376/514 (73%), Gaps = 1/514 (0%)








 
Structural Features:
COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) 
[Inorganic ion transport and metabolism]
CD-Length = 554 residues,  94.8% aligned
Score =  356 bits (914), Expect = 5e-99
Identities = 180/530 (33%), Positives = 270/530 (50%), Gaps = 28/530 (5%)

pfam00916, Sulfate_transp, Sulfate transporter family.
CD-Length = 312 residues, 100.0% aligned
Score =  172 bits (437), Expect = 1e-43
Identities = 99/312 (31%), Positives = 165/312 (52%), Gaps = 12/312 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1541




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18683




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33394




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:769_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:769
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1352
                           PA0029_tr
                           translation of PA0029
                           517
                           99.03
                           99.22
                           0
                           2575.0
     

     
     
49913
                           gb|AAG03419.1|AE004442_6
                           (AE004442) probable sulfate transporter [Pseudomonas aeruginosa PAO1]
                           517
                           99.03
                           99.22
                           0
                           2575.0
     

     
     
49914
                           gb|AAN65709.1|AE016197_7
                           (AE016774) sulfate transporter [Pseudomonas putida KT2440]
                           521
                           58.73
                           72.36
                           4
                           1468.0
     

     
     
49915
                           gb|AAO53722.1|
                           (AE016856) sulfate transporter family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           522
                           58.23
                           72.22
                           5
                           1461.0
     

     
     
49917
                           dbj|BAC97645.1|
                           (AP005351) sulfate permease [Vibrio vulnificus YJ016]
                           554
                           37.18
                           55.95
                           49
                           912.0
     

     






      

          
GC ORFID: 43771How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0029Glimmer Score: 

          
Start: 5833413Stop: 5831860

          
Length: 1554


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0029 translation of PA0029Homolog Bit Score 996.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4095 (ORF: BLASTX 574.0), t_PA0029 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTGGACGCGCCTGCTGCCGTTCCTCGCCTGGCTACCGGGGCTACGCCGGGGCACGCTCAGGCGCGAGGCC 
TGGGTCGGCCTGAATGGCGCGATCCTGGCACTGCCGCAATCGATGGCCTATGCGCTGATCGCCGGCCTGCCA 
GCGGAGTACGGCCTGTACGCGGCGATGCTGCCAGTGGCGATCGCCTGCCTGTGGGGCTCGTCGCGCTACCTG 
GTGAGCGGTCCCACCGCGGCGATCTCGGTGCTGCTGTTCAGTTCGGTGGCCCCCCTGGCGCCGCTGGGCAGC 
CCGCAATACGTCCAGGCCGTGCTGCTGCTGACCTTTCTCGCCGGCGCCTTCCAGTGGCTGCTCGGCGTCCTG 
CGCGTCGGGTCGCTGGTCAATTTCGTCTCGCATTCGGTGATGCTCGGCTTCACCCTTGGCGCGGCGCTGCTG 
ATCGTCCTCGGCCAACTGCCCTATCTTCTCGGCCTGGCCGCGAGCGGGGAGGGCGCAGCGCCGGGAAACGGC 
TGGCGGCTGCTGGCGCGGTTCGCCGAGTTCGATGGCCCATCGCTGCTGGTGGGCGGCTTCAGCTTCGCGCTC 
AGCCTGCTGGTCAGGCGCCTCCGACCGCGCTGGCCGGCCCTGCTGCTTGGCTTGCTGGGCGGTGCCACGCTG 
GTCTGGGCGCTACCCGGGACCTTCGCCTCGGTAGCCCATGTGCAGGCCTTATCGAGTGCACTGCCGGGTTGG 
AATCCGCTGGTCTTCGATTCCCGATCGATCCTCGACCTGCTACCTGCGGCGGTGGCCTGCGGCATGCTCGGG 
CTGGTCACCAGCCTGTCGATCGCCCGCGCCCTGGCCGCGCGCCAGGGAGACGCGTTCGATGCCAACCAGGAG 
GTCCGCGCCCAGGGTCTGTCGAACCTGCTCGGGCCTTGGCTGTCGGCGAGCCTGTCGGCGGGTTCCTTCACC 
CGCTCCGGGCTCAATCTGGAAGCCGGTGCGCGCTCCCCGCTGGCGGGTGCGTTTTCGGCGCTCTGGGTGGCC 
CTGCTGGCCGTGCTCGGTGCGCGCCTGATCGAGCATGTACCGTTGCCGGCGATGGCCGCAGGCATCCTGCTG 
ATCGCCTGGGGCCTGATCGACCGCCCGGCGCTCCGCGCGCTCTACCGCAGCGGCCGCGCCGAATGCCTGGTG 
GCCGGCCTAACCGCCCTGGCCACGCTGCTGTTGCCGCTGCAGAACGCCATCTACGCGGGAGTGCTGGCGTCG 
CTGTTCTTCTACCTGCGGCGCACCTCGACACCACGCGTACTGCGCCAGCGCAACGACGAGGAAGAGGTGCTG 
CGCATCGAAGGCTCGATCTTCTTCGGCGCCTGCGACTACCTGCAACGCCTCATGCGCCAATGCGACAGGCCA 
CGGCTGGTGCTGGACGCCCGCCAGGTGAACTTCATCGACTTCGCCGGCGCAGTGCTGTTGCAGCAGGAAGCC 
CGCCGCCTGCACGCCGAGGGACGCCGCCTGGTATTGCGCCACGCTCGCCCGCAGGTCCGCGAAGCGCTGGGC 
CGGCAGGCCGACGAAGGCTGCCGCCTGCACTACGAAGGCTGA