ViewGene

Locus Name:
GeneID:
Location:

GeneID:766
TrivialName: PA14_39390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39390
PAO1 Ortholog Locus:PA1944
Sequence Length:1488
Protein Length:495
Start: 3506527
Stop: 3505040
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05332.1|AE004621_3 (AE004621) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 494/495 (99%), Positives = 495/495 (100%)
Sequence:
GTGAGCAAGCTGTTCATCATCGTGGAACGCAAGGAAGACTGGACGTCCTATTACCCCAGCGAGGATGTGGTC
ACCGCCCAGGAATACCTGGAACTGCCCATCGACGACGACACTGGCAAGCGGGTCCAGGTGATCAACCTGTGC
CGGCACTACAAGTACCTGCGCCATGGCTACTACTGCTCGCTGCTCGCCGAGGCGCGCGGGCACAAGGTGATC
CCCTCGGTGCGGACCATCAGCGAGCTGGCCAGGAAGTCGCTGTACAGCCTGGTCCTGGAGGACCTCGACCGC
ACCCTGGACAAGGCCCTGGCCGCGCACCCCTACGGCAGCACCGATGGTTTCACCCTGACCCTGTATTTCGGC
CGTACCGACATCGAGCCGTTGCAGGACCTGGCGCGACAGTTGTTCGAGGCGTTTCCCTGCCCGTTGCTGCTG
GTGGAGTTCAAGCGCAACCGCACCTGGCACATCGAGGGCATCAAGCCCGGCGCCATCCACAAGCTGCGCGAG
GATCAGGAGGACCTCTTCGCCAACGCCCTGGACAACTTCAGCCGGCAGATCTGGCGCAAGCCGCGTTCGCGC
AAGCCGTTCCGCTACGACCTGGCGATCCTCCACGACCCCGGCGAGGCGTTCCCGCCGTCCGATGCCAAAGCG
CTGAAGAACTTCGTGCGGGTCGGCCGCAGCCTCGGCATCGACGTCGACCTGATCGAGCGCAAGGACTATTCG
CGGATCGCCGAGTACGACGCGCTGTTCATCCGCGAGACCACCAATGTCGCCGACCACACCTACCGTTTCGCC
AAGAAGGCCGAGAGCGAAGGGTTGGTGGTGATGGACGACCCGGTGTCGATCCTGCGCTGCACCAACAAGGTG
TACCTGGCCGACCTGCTGCGCAGCCACAAGCTGGGCATGCCGGCCACGGAGATTCTCTACAAGGAGAACCCG
CAGGAACTGGAGAAGGTCGGCGAGCGCCTGGGCTTCCCGCTGGTGCTGAAGATTCCCGACGGCAGCTTCTCG
CGCGGGGTGATCAAGGTGGAGGACCAGGAGCAGTTGCTGGCGGCCAGCGCCGAGCTGTTCGAGCGCTCGGTG
CTGATCCTTGCCCAGGAGTTCTTCTATACCGAGTACGACTGGCGTATCGGCGTGCTCAACCGCAAGCCGATC
TTCGCCTGCCAGTACTTCATGTCCAAGGGCCACTGGCAGATCTACGACCACAGCCCGGACGCCGAGGAGGTC
AGCGGAGATTTCCGCACCATGCCCGTGCACGAGGCGCCGCGCAAGGTGGTGGAGCTGGCGGTGAAGACCGCC
AATCTGATCGGCGACGGCCTCTACGGGGTGGACCTGAAGCAGGCCGGCGACAAGGTGGTGGTGATCGAGGTG
AACGACAACCCGAACATCGACTGCGGGGTGGAGGATGTCTACCTCGGCGACGACCTCTACAAGCTGGTCCTG
GAGGAGTTCGTCCGGCGCCTGGAAGTCAAGCGTCGCGGCTACGACTGA
Translation:
MSKLFIIVERKEDWTSYYPSEDVVTAQEYLELPIDDDTGKRVQVINLCRHYKYLRHGYYCSLLAEARGHKVI
PSVRTISELARKSLYSLVLEDLDRTLDKALAAHPYGSTDGFTLTLYFGRTDIEPLQDLARQLFEAFPCPLLL
VEFKRNRTWHIEGIKPGAIHKLREDQEDLFANALDNFSRQIWRKPRSRKPFRYDLAILHDPGEAFPPSDAKA
LKNFVRVGRSLGIDVDLIERKDYSRIAEYDALFIRETTNVADHTYRFAKKAESEGLVVMDDPVSILRCTNKV
YLADLLRSHKLGMPATEILYKENPQELEKVGERLGFPLVLKIPDGSFSRGVIKVEDQEQLLAASAELFERSV
LILAQEFFYTEYDWRIGVLNRKPIFACQYFMSKGHWQIYDHSPDAEEVSGDFRTMPVHEAPRKVVELAVKTA
NLIGDGLYGVDLKQAGDKVVVIEVNDNPNIDCGVEDVYLGDDLYKLVLEEFVRRLEVKRRGYD*
AnnotationID:775GeneID:766
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 13:01:28
Gene Name:
Confidence Code:3
GeneProduct:ribosomal protein S6 modification enzyme
Cell Localization:()
Synonyms:PA1944
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0189
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN68564.1|AE016488_8 (AE016785) ribosomal protein S6 modification protein-related
           protein [Pseudomonas putida KT2440]
          Length = 526

 Score =  711 bits (1834), Expect = 0.0
 Identities = 345/492 (70%), Positives = 411/492 (83%), Gaps = 2/492 (0%)

>gb|AAO10191.1|AE016802_234 (AE016802) Glutathione synthase; Ribosomal protein S6 modification
           enzyme [Vibrio vulnificus CMCP6]
          Length = 483

 Score =  460 bits (1183), Expect = e-128
 Identities = 228/491 (46%), Positives = 331/491 (67%), Gaps = 11/491 (2%)

>gb|AAO10191.1|AE016802_234 (AE016802) Glutathione synthase; Ribosomal protein S6 modification
           enzyme [Vibrio vulnificus CMCP6]
          Length = 483

 Score =  460 bits (1183), Expect = e-128
 Identities = 228/491 (46%), Positives = 331/491 (67%), Gaps = 11/491 (2%)
Structural Features:
COG0189, RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme 
(glutaminyl transferase) 
[Coenzyme metabolism / Translation, ribosomal structure and biogenesis] 
CD-Length = 318 residues, 100.0% aligned
Score =  251 bits (643), Expect = 1e-67
Identities = 99/326 (30%), Positives = 142/326 (43%), Gaps = 12/326 (3%)
Genomic Context:
Comment:
ReferenceID:14211
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18677
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32775
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:766_cdd.html
URL:
Homologs By Global Alignment
Gene ID:766

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1346 PA1944_tr translation of PA1944 495 99.79 99.99 0 2576.0
49835 gb|AAG05332.1|AE004621_3 (AE004621) hypothetical protein PA1944 [Pseudomonas aeruginosa PAO1] 495 99.59 99.99 0 2573.0
1347 PA1345_tr translation of PA1345 529 66.91 79.01 34 1895.0
49836 gb|AAG04734.1|AE004564_3 (AE004564) hypothetical protein PA1345 [Pseudomonas aeruginosa PAO1] 529 66.91 79.01 34 1895.0
49837 gb|AAN68564.1|AE016488_8 (AE016785) ribosomal protein S6 modification protein-related protein [Pseudomonas putida KT2440] 528 65.34 77.84 35 1830.0
GC ORFID: 43768How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1944Glimmer Score:
Start: 1447384Stop: 1448871
Length: 1488
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1944 translation of PA1944Homolog Bit Score 996.0
Other Homologs: t_PA1345 (ORF: BLASTX 737.0), t_PA1944 (ORF: GLIMMER)
GC ORF Sequence
GTGAGCAAGCTGTTCATCATCGTGGAACGCAAGGAAGACTGGACGTCCTATTACCCCAGCGAGGATGTGGTC
ACCGCCCAGGAATACCTGGAACTGCCCATCGACGACGACACTGGCAAGCGGGTCCAGGTGATCAACCTGTGC
CGGCACTACAAGTACCTGCGCCATGGCTACTACTGCTCGCTGCTCGCCGAGGCGCGCGGGCACAAGGTGATC
CCCTCGGTGCGGACCATCAGCGAGCTGGCCAGGAAGTCGCTGTACAGCCTGGTCCTGGAGGACCTCGACCGC
ACCCTGGACAAGGCCCTGGCCGCGCACCCCTACGGCAGCACCGATGGTTTCACCCTGACCCTGTATTTCGGC
CGTACCGACATCGAGCCGTTGCAGGACCTGGCGCGACAGTTGTTCGAGGCGTTTCCCTGCCCGTTGCTGCTG
GTGGAGTTCAAGCGCAACCGCACCTGGCACATCGAGGGCATCAAGCCCGGCGCCATCCACAAGCTGCGCGAG
GATCAGGAGGACCTCTTCGCCAACGCCCTGGACAACTTCAGCCGGCAGATCTGGCGCAAGCCGCGTTCGCGC
AAGCCGTTCCGCTACGACCTGGCGATCCTCCACGACCCCGGCGAGGCGTTCCCGCCGTCCGATGCCAAAGCG
CTGAAGAACTTCGTGCGGGTCGGCCGCAGCCTCGGCATCGACGTCGACCTGATCGAGCGCAAGGACTATTCG
CGGATCGCCGAGTACGACGCGCTGTTCATCCGCGAGACCACCAATGTCGCCGACCACACCTACCGTTTCGCC
AAGAAGGCCGAGAGCGAAGGGTTGGTGGTGATGGACGACCCGGTGTCGATCCTGCGCTGCACCAACAAGGTG
TACCTGGCCGACCTGCTGCGCAGCCACAAGCTGGGCATGCCGGCCACGGAGATTCTCTACAAGGAGAACCCG
CAGGAACTGGAGAAGGTCGGCGAGCGCCTGGGCTTCCCGCTGGTGCTGAAGATTCCCGACGGCAGCTTCTCG
CGCGGGGTGATCAAGGTGGAGGACCAGGAGCAGTTGCTGGCGGCCAGCGCCGAGCTGTTCGAGCGCTCGGTG
CTGATCCTTGCCCAGGAGTTCTTCTATACCGAGTACGACTGGCGTATCGGCGTGCTCAACCGCAAGCCGATC
TTCGCCTGCCAGTACTTCATGTCCAAGGGCCACTGGCAGATCTACGACCACAGCCCGGACGCCGAGGAGGTC
AGCGGAGATTTCCGCACCATGCCCGTGCACGAGGCGCCGCGCAAGGTGGTGGAGCTGGCGGTGAAGACCGCC
AATCTGATCGGCGACGGCCTCTACGGGGTGGACCTGAAGCAGGCCGGCGACAAGGTGGTGGTGATCGAGGTG
AACGACAACCCGAACATCGACTGCGGGGTGGAGGATGTCTACCTCGGCGACGACCTCTACAAGCTGGTCCTG
GAGGAGTTCGTCCGGCGCCTGGAAGTCAAGCGTCGCGGCTACGACTGA