ViewGene

Locus Name:
GeneID:
Location:

GeneID:764
TrivialName: PA14_34350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34350
PAO1 Ortholog Locus:PA2343
Sequence Length:1509
Protein Length:502
Start: 3056684
Stop: 3055176
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05731.1|AE004660_7 (AE004660) xylulose kinase [Pseudomonas aeruginosa PAO1]
Identities = 498/502 (99%), Positives = 502/502 (100%)
Sequence:
ATGACTCCGGAGGGCCGCATGCACGGATTGTTCCTCGGCATCGATTGCGGCACCCAAGGCAGCAAGGCGCTG
CTGCTCGACGCCGGCAGCGGCCGCACGCTGGGCCTGGGCAGCGCCGCGCAGCGCCCGCCGGAAGGCCGCGAC
GGACGCCGCGAGCAGGACCCGGCGGACTGGCTGGAAGCCATGGCCAGCGCGGTACGCATGGCCCTGGAAGAA
GCCGCGGTGGACGGCCGCGAGGTCCGCGCCCTGGCGGTTTCCGCCCAGCAGCATGGGCTGCTCCTGCTCGAC
GCCGAGGGCCGGGCGCTGCGCCCGGCCAAGCTCTGGTGCGACACCGAGAGCGCGGCGGAGAACCGCGAGCTG
CTGGAAGCCCTCGGCGGCCCGGCCGGCTCGCTGGAACGCCTGGGGCTGGTGCTCGCGCCGGGCTACACGCTG
TCCAAGCTGCTCTGGAGCAAGCGACGCTTTCCCGAGCTGTTCGCCCGCGTCGCGCATATCCTCCTGCCCCAC
GACTACCTCAACCACTGGCTCACCGGCCGCGTCTGCAGCGAAGCGGGCGACGCCTCCGGTAGCGGCTACTTC
GACGTGCGCCGGCGCACCTGGGCCAGCGACGTGCTGGAGCTGGTCGAGCCGGGCGGACGCCTGGCGGCAGCG
CTGCCGGAGCTGATCGAGCCCGGCGCCTGCATCGGCAACCTGCGCCCCGAAGCGGCCGCCGCCCTCGGCCTG
GCTCCCCACACGCGGGTCGCCGGCGGCGGCGGCGACAACATGCTCGCCGCCATCGGCACCGGCAACATCCGC
CCCGGCCTGCTCACCGCCAGCCTGGGCACCTCCGGCACCCTGAGCGCCTATGCCGAGCGGCCGCTGGTCAGT
CCGCACGGCGAGCTGGCGACCTTCTGCGCCTCGTCCGGCGGCTGGCTGCCGCTGGCCTGCACGATGAACCTC
ACCGGTGCCTGCGGCCTGGTACAGGACCTGCTGCACCTCGACCTCGACGAATTCTCCCGGCTGGCCGCCCAG
GCGCCGGTCGGCGCCGAGGGTCTGCTGATGCTGCCGTTCTTCGACGGCGAGCGGGTTCCGGCGCTACCGCAT
GCCAGCGCCAGCCTGCATGGCATGACCGCGGCCAACCTGAGCCGCGCCAATCTTTGCCGGGCGGTGCTCGAA
GGCACCGCCTTCGGCCTGCGCTACGGCCTCGACCTGCTGCGCGCCAGCGGCCTGCCGGGCGAGGAAATCCGC
CTGGTCGGCGGCGCGGCGAAGAACCCGCTGTGGCGGCGGACGCTCGCCGACCTGCTCGGCCTGCCGCTGGTC
TGTCCACGGCAGACCGAGGCCGCCGCCCTTGGCGCGGCGCTCCAGGCGGCCTGGAGCCTGGGCCGCGAAAGC
GGCGCCGGTGAAAGCCTGGAAGCCCTGTGCCAGCGCTGCGTGGCGCTCGACGAGGCGACCCGCACCCAGCCC
CAGGCGCGACGACAGGCAGCCTACGAACAGGCCTACCGGCGTTACCTGGAGCACCTGCCTCCGCGATAA
Translation:
MTPEGRMHGLFLGIDCGTQGSKALLLDAGSGRTLGLGSAAQRPPEGRDGRREQDPADWLEAMASAVRMALEE
AAVDGREVRALAVSAQQHGLLLLDAEGRALRPAKLWCDTESAAENRELLEALGGPAGSLERLGLVLAPGYTL
SKLLWSKRRFPELFARVAHILLPHDYLNHWLTGRVCSEAGDASGSGYFDVRRRTWASDVLELVEPGGRLAAA
LPELIEPGACIGNLRPEAAAALGLAPHTRVAGGGGDNMLAAIGTGNIRPGLLTASLGTSGTLSAYAERPLVS
PHGELATFCASSGGWLPLACTMNLTGACGLVQDLLHLDLDEFSRLAAQAPVGAEGLLMLPFFDGERVPALPH
ASASLHGMTAANLSRANLCRAVLEGTAFGLRYGLDLLRASGLPGEEIRLVGGAAKNPLWRRTLADLLGLPLV
CPRQTEAAALGAALQAAWSLGRESGAGESLEALCQRCVALDEATRTQPQARRQAAYEQAYRRYLEHLPPR*
AnnotationID:773GeneID:764
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 07:07:04
Gene Name:mtlY
Confidence Code:2
GeneProduct:xylulose kinase
Cell Localization:()
Synonyms:xylB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1070,COG1069,COG0554
Secondary Functional Category(ies):energy metabolism
EC Number:2.7.1.17
Status:ACTIVE
Pathway:
Homology:
>gb|AAC04473.1| (AF007800) xylulose kinase [Pseudomonas fluorescens]
          Length = 493

 Score =  618 bits (1593), Expect = e-176
 Identities = 291/490 (59%), Positives = 378/490 (77%), Gaps = 5/490 (1%)

gb|AAO56204.1| (AE016865) xylulokinase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 493

 Score =  597 bits (1538), Expect = e-170
 Identities = 285/490 (58%), Positives = 371/490 (75%)
Structural Features:
COG1070, XylB, Sugar (pentulose and hexulose) kinases 
[Carbohydrate transport and metabolism]
CD-Length = 502 residues,  96.6% aligned
Score =  383 bits (984), Expect = 3e-107
Identities = 206/495 (41%), Positives = 258/495 (52%), Gaps = 17/495 (3%)

COG1069, AraB, Ribulose kinase 
[Energy production and conversion]
CD-Length = 544 residues,  94.9% aligned
Score =  212 bits (540), Expect = 1e-55
Identities = 157/532 (29%), Positives = 226/532 (42%), Gaps = 61/532 (11%)

COG0554, GlpK, Glycerol kinase 
[Energy production and conversion]
CD-Length = 499 residues,  98.6% aligned
Score =  151 bits (384), Expect = 2e-37
Identities = 132/511 (25%), Positives = 217/511 (42%), Gaps = 44/511 (8%)
Genomic Context:
Comment:
ReferenceID:1531
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18673
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32455
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:764_cdd.html
URL:
ReferenceID:34478
Author/Investigator(s): Brunker P, Altenbuchner J, Mattes R.
Title: Structure and function of the genes involved in mannitol, arabitol and glucitol utilization from Pseudomonas fluorescens DSM50106.
PubMed: 9461423
MedLine:
Source:
Gene. 1998 Jan 5;206(1):117-26.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9461423
Homologs By Global Alignment
Gene ID:764

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1344 PA2343_tr translation of PA2343 502 99.20 99.99 0 2578.0
49808 gb|AAG05731.1|AE004660_7 (AE004660) xylulose kinase [Pseudomonas aeruginosa PAO1] 502 99.20 99.99 0 2578.0
49809 gb|AAC04473.1| (AF007800) xylulose kinase [Pseudomonas fluorescens] 502 58.36 75.89 9 1592.0
49810 gb|AAO56204.1| (AE016865) xylulokinase [Pseudomonas syringae pv. tomato str. DC3000] 504 56.74 73.80 13 1532.0
49811 emb|CAE14252.1| (BX571865) xylulose kinase [Photorhabdus luminescens subsp. laumondii TTO1] 510 48.43 65.09 15 1293.0
GC ORFID: 43766How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2343Glimmer Score:
Start: 1897232Stop: 1898740
Length: 1509
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA2343 translation of PA2343Homolog Bit Score 997.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6718 (ORF: BLASTX 506.0), t_PA2343 (ORF: GLIMMER)
GC ORF Sequence
ATGACTCCGGAGGGCCGCATGCACGGATTGTTCCTCGGCATCGATTGCGGCACCCAAGGCAGCAAGGCGCTG
CTGCTCGACGCCGGCAGCGGCCGCACGCTGGGCCTGGGCAGCGCCGCGCAGCGCCCGCCGGAAGGCCGCGAC
GGACGCCGCGAGCAGGACCCGGCGGACTGGCTGGAAGCCATGGCCAGCGCGGTACGCATGGCCCTGGAAGAA
GCCGCGGTGGACGGCCGCGAGGTCCGCGCCCTGGCGGTTTCCGCCCAGCAGCATGGGCTGCTCCTGCTCGAC
GCCGAGGGCCGGGCGCTGCGCCCGGCCAAGCTCTGGTGCGACACCGAGAGCGCGGCGGAGAACCGCGAGCTG
CTGGAAGCCCTCGGCGGCCCGGCCGGCTCGCTGGAACGCCTGGGGCTGGTGCTCGCGCCGGGCTACACGCTG
TCCAAGCTGCTCTGGAGCAAGCGACGCTTTCCCGAGCTGTTCGCCCGCGTCGCGCATATCCTCCTGCCCCAC
GACTACCTCAACCACTGGCTCACCGGCCGCGTCTGCAGCGAAGCGGGCGACGCCTCCGGTAGCGGCTACTTC
GACGTGCGCCGGCGCACCTGGGCCAGCGACGTGCTGGAGCTGGTCGAGCCGGGCGGACGCCTGGCGGCAGCG
CTGCCGGAGCTGATCGAGCCCGGCGCCTGCATCGGCAACCTGCGCCCCGAAGCGGCCGCCGCCCTCGGCCTG
GCTCCCCACACGCGGGTCGCCGGCGGCGGCGGCGACAACATGCTCGCCGCCATCGGCACCGGCAACATCCGC
CCCGGCCTGCTCACCGCCAGCCTGGGCACCTCCGGCACCCTGAGCGCCTATGCCGAGCGGCCGCTGGTCAGT
CCGCACGGCGAGCTGGCGACCTTCTGCGCCTCGTCCGGCGGCTGGCTGCCGCTGGCCTGCACGATGAACCTC
ACCGGTGCCTGCGGCCTGGTACAGGACCTGCTGCACCTCGACCTCGACGAATTCTCCCGGCTGGCCGCCCAG
GCGCCGGTCGGCGCCGAGGGTCTGCTGATGCTGCCGTTCTTCGACGGCGAGCGGGTTCCGGCGCTACCGCAT
GCCAGCGCCAGCCTGCATGGCATGACCGCGGCCAACCTGAGCCGCGCCAATCTTTGCCGGGCGGTGCTCGAA
GGCACCGCCTTCGGCCTGCGCTACGGCCTCGACCTGCTGCGCGCCAGCGGCCTGCCGGGCGAGGAAATCCGC
CTGGTCGGCGGCGCGGCGAAGAACCCGCTGTGGCGGCGGACGCTCGCCGACCTGCTCGGCCTGCCGCTGGTC
TGTCCACGGCAGACCGAGGCCGCCGCCCTTGGCGCGGCGCTCCAGGCGGCCTGGAGCCTGGGCCGCGAAAGC
GGCGCCGGTGAAAGCCTGGAAGCCCTGTGCCAGCGCTGCGTGGCGCTCGACGAGGCGACCCGCACCCAGCCC
CAGGCGCGACGACAGGCAGCCTACGAACAGGCCTACCGGCGTTACCTGGAGCACCTGCCTCCGCGATAA