ViewGene
Locus Name:
GeneID:
Location:

GeneID:763
TrivialName: PA14_05790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05790
PAO1 Ortholog Locus:PA0443
Sequence Length:1491
Protein Length:496
Start: 511622
Stop: 513112
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03832.1|AE004481_8 (AE004481) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 496/496 (100%), Positives = 496/496 (100%)
Sequence:
ATGCAACAGAGCAGATCGGAAGTGACCGAGCGCGACGGCTTGGTCGAGCTGTCCGCCGGCAGCGACGTACTC
GACAGTCCCCGCTACAACCACGACATCGCCCCGACCCGGGTGGAACAGCGTACCTGGAACAGGTGGCACATC
ACCGCGCTGTGGATCGGCATGTCCATCTGCGTGCCCACCTACACCCTCGGCGGCGTCCTCACCGCCTACTTC
GGCCTCAGCGTCGGCGAAGCGCTGCTGGCGATCCTGCTGGCCAACCTGGTGGTGCTGATCCCGCTGACCCTC
AATGCCTTCGCCGGCACCCGCTACGGCATTCCCTTCCCGGTGCTGCTGCGCGCTTCGTTCGGCATCATCGGC
TCCAACGTGCCATGCCTGATCCGCGCCGTGGTCGCGTGCGGCTGGTTCGGCATCCAGACGCTGTTCGGCGGG
CTGGCGATCCATCTCTTCCTCGGTTCGATCTTTCCCGCCTGGAAGGCCCTCGGCGGCACCGGCGAGGTGATC
GGTTTCCTCCTGTTCTGGGGGCTGAACCTGTGGGTGGTGCTGCGCGGCGCGGAGTCGATCAAATGGCTGGAG
ACACTCTCGGCACCGCTGCTGGTGCTGGTCGGCCTCGGCCTGCTGGTGTGGGCGCTGCCGCACATATCGGTC
AGTGAACTGCTGGCGCAGCCGCCGAAGCGGCCGGAAGGCGCCAGCGTCACCGGCTACTTCATGGCCGGGCTG
ACGGCGATGGTCGGCTTCTGGGCCACGCTGTCGCTGAACATCCCCGACTTCAGCCGCTATGCGCGCAGCCAG
AAGGACCAGATACTCGGACAGATCTTCGGCCTGCCGCTGACCATGTTCCTGTTCGCCGCCCTCGGCGTGGTG
ATGACCGCCGCCTCGGCTTCGTTGGTGGGCGAGACGGTTTCCGACCCGGTCAGCCTGATCGGGCACATCCCC
AGCCCCGGCTGGGTGGCGGTGGCGATGGCGTTGATCATCGTCGCCACCCTCTCGACCAACACCGCGGCGAAC
ATCGTCTCGCCGACCAACGACTTCCAGAACATCGCACCGAAACTCATCGGCCGCACCCGCGCCGTCTGGCTC
ACCGGTTTCATCGGCCTGGCGCTGATGGCCCACGAGTTGCTGAAGAAGCTCGGCTGGATCGTTTCCGACCTC
AGCCTGGAAAGCGTCTACTCCAACTGGCTGCTCGGCTACTCCAGCCTGCTCGGGCCGATCGCGGGGATCATG
GTGGTGGACTACTTCCTGGTGCGCAGGCAACGCCTCGACCTCGCCGGACTCTACCGCGACGACGTCTACCCG
GCCTGGAACTGGCCCGGCTTCGCCGCCTTCGCGGTGCCGGTGGCGCTGACCGTCATGGCCCTCGGCAACCGC
CAATTCCATTGGTTCTACGACTACGGCTGGTTCACCGGCTCGCTGCTCGGCGGCGCGCTCTACTACGGCCTC
TGCGGCCGCCGTGCGCGGAGCCCGGCGGCATTGGCCAAACCGCTGCCCTGA
Translation:
MQQSRSEVTERDGLVELSAGSDVLDSPRYNHDIAPTRVEQRTWNRWHITALWIGMSICVPTYTLGGVLTAYF
GLSVGEALLAILLANLVVLIPLTLNAFAGTRYGIPFPVLLRASFGIIGSNVPCLIRAVVACGWFGIQTLFGG
LAIHLFLGSIFPAWKALGGTGEVIGFLLFWGLNLWVVLRGAESIKWLETLSAPLLVLVGLGLLVWALPHISV
SELLAQPPKRPEGASVTGYFMAGLTAMVGFWATLSLNIPDFSRYARSQKDQILGQIFGLPLTMFLFAALGVV
MTAASASLVGETVSDPVSLIGHIPSPGWVAVAMALIIVATLSTNTAANIVSPTNDFQNIAPKLIGRTRAVWL
TGFIGLALMAHELLKKLGWIVSDLSLESVYSNWLLGYSSLLGPIAGIMVVDYFLVRRQRLDLAGLYRDDVYP
AWNWPGFAAFAVPVALTVMALGNRQFHWFYDYGWFTGSLLGGALYYGLCGRRARSPAALAKPLP*
AnnotationID:772GeneID:763
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 13:01:16
Gene Name:
Confidence Code:3
GeneProduct:putative permease for cytosine/purines, uracil, thiamine, allantoin
Cell Localization:()
Synonyms:PA0443
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1953,pfam02133
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69627.1|AE016596_5 (AE016789) transporter, NCS1 nucleoside transporter family
           [Pseudomonas putida KT2440]
          Length = 496

 Score =  891 bits (2303), Expect = 0.0
 Identities = 437/496 (88%), Positives = 465/496 (93%)








 
Structural Features:
COG1953, FUI1, Cytosine/uracil/thiamine/allantoin permeases 
[Nucleotide transport and metabolism / Coenzyme metabolism]
CD-Length = 497 residues, 100.0% aligned
Score =  460 bits (1186), Expect = 1e-130
Identities = 221/508 (43%), Positives = 291/508 (57%), Gaps = 27/508 (5%)

pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, thiamine, allantoin.
CD-Length = 436 residues,  95.0% aligned
Score =  241 bits (617), Expect = 1e-64
Identities = 145/430 (33%), Positives = 222/430 (51%), Gaps = 26/430 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1529




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18671




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33764




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:763_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:763
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1343
                           PA0443_tr
                           translation of PA0443
                           496
                           99.99
                           99.99
                           0
                           2579.0
     

     
     
49804
                           gb|AAG03832.1|AE004481_8
                           (AE004481) probable transporter [Pseudomonas aeruginosa PAO1]
                           496
                           99.99
                           99.99
                           0
                           2579.0
     

     
     
49805
                           gb|AAN69627.1|AE016596_5
                           (AE016789) transporter, NCS1 nucleoside transporter family [Pseudomonas putida KT2440]
                           496
                           88.10
                           93.75
                           0
                           2303.0
     

     
     
49806
                           gb|AAK24318.1|
                           (AE005904) cytosine/purines/uracil/thiamine/allantoin permease family protein [Caulobacter crescentus CB15]
                           530
                           39.43
                           53.96
                           76
                           914.0
     

     
     
49807
                           dbj|BAC69658.1|
                           (AP005028) putative allantoin permease [Streptomyces avermitilis MA-4680]
                           536
                           38.99
                           52.42
                           63
                           899.0
     

     






      

          
GC ORFID: 43765How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0443Glimmer Score: 

          
Start: 6312964Stop: 6314454

          
Length: 1491


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0443 translation of PA0443Homolog Bit Score 998.0

          
Other Homologs:  t_PA0443 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAACAGAGCAGATCGGAAGTGACCGAGCGCGACGGCTTGGTCGAGCTGTCCGCCGGCAGCGACGTACTC 
GACAGTCCCCGCTACAACCACGACATCGCCCCGACCCGGGTGGAACAGCGTACCTGGAACAGGTGGCACATC 
ACCGCGCTGTGGATCGGCATGTCCATCTGCGTGCCCACCTACACCCTCGGCGGCGTCCTCACCGCCTACTTC 
GGCCTCAGCGTCGGCGAAGCGCTGCTGGCGATCCTGCTGGCCAACCTGGTGGTGCTGATCCCGCTGACCCTC 
AATGCCTTCGCCGGCACCCGCTACGGCATTCCCTTCCCGGTGCTGCTGCGCGCTTCGTTCGGCATCATCGGC 
TCCAACGTGCCATGCCTGATCCGCGCCGTGGTCGCGTGCGGCTGGTTCGGCATCCAGACGCTGTTCGGCGGG 
CTGGCGATCCATCTCTTCCTCGGTTCGATCTTTCCCGCCTGGAAGGCCCTCGGCGGCACCGGCGAGGTGATC 
GGTTTCCTCCTGTTCTGGGGGCTGAACCTGTGGGTGGTGCTGCGCGGCGCGGAGTCGATCAAATGGCTGGAG 
ACACTCTCGGCACCGCTGCTGGTGCTGGTCGGCCTCGGCCTGCTGGTGTGGGCGCTGCCGCACATATCGGTC 
AGTGAACTGCTGGCGCAGCCGCCGAAGCGGCCGGAAGGCGCCAGCGTCACCGGCTACTTCATGGCCGGGCTG 
ACGGCGATGGTCGGCTTCTGGGCCACGCTGTCGCTGAACATCCCCGACTTCAGCCGCTATGCGCGCAGCCAG 
AAGGACCAGATACTCGGACAGATCTTCGGCCTGCCGCTGACCATGTTCCTGTTCGCCGCCCTCGGCGTGGTG 
ATGACCGCCGCCTCGGCTTCGTTGGTGGGCGAGACGGTTTCCGACCCGGTCAGCCTGATCGGGCACATCCCC 
AGCCCCGGCTGGGTGGCGGTGGCGATGGCGTTGATCATCGTCGCCACCCTCTCGACCAACACCGCGGCGAAC 
ATCGTCTCGCCGACCAACGACTTCCAGAACATCGCACCGAAACTCATCGGCCGCACCCGCGCCGTCTGGCTC 
ACCGGTTTCATCGGCCTGGCGCTGATGGCCCACGAGTTGCTGAAGAAGCTCGGCTGGATCGTTTCCGACCTC 
AGCCTGGAAAGCGTCTACTCCAACTGGCTGCTCGGCTACTCCAGCCTGCTCGGGCCGATCGCGGGGATCATG 
GTGGTGGACTACTTCCTGGTGCGCAGGCAACGCCTCGACCTCGCCGGACTCTACCGCGACGACGTCTACCCG 
GCCTGGAACTGGCCCGGCTTCGCCGCCTTCGCGGTGCCGGTGGCGCTGACCGTCATGGCCCTCGGCAACCGC 
CAATTCCATTGGTTCTACGACTACGGCTGGTTCACCGGCTCGCTGCTCGGCGGCGCGCTCTACTACGGCCTC 
TGCGGCCGCCGTGCGCGGAGCCCGGCGGCATTGGCCAAACCGCTGCCCTGA