ViewGene
Locus Name:
GeneID:
Location:

GeneID:762
TrivialName: PA14_64920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64920
PAO1 Ortholog Locus:PA4915
Sequence Length:1626
Protein Length:541
Start: 5786095
Stop: 5787720
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08300.1|AE004904_8 (AE004904) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
Identities = 538/541 (99%), Positives = 541/541 (100%)
Sequence:
ATGCTTACTGGCGTCACGGTTCGAATCCGCCTGCTGGTCCTGGCGTTGCTGCCCCTGACGATGCTCGTCACG
GTCATCGCGATGGCGCTGGCCAACGCCAGTCGACTCGATGCCAGCTTCCAGGACCTTTTCAACAACCGGATG
AAGCCCATCAGCCAGCTCAAGATCGTCGCCGACGCCGTTGCGGTCAGCGTGGTCGACGCCCTGCACAAGTAC
CGTGCGGGCGTCTTCGATGAAGAGCGCCTGCAGCAGGAGTTGAGTGGGGCGCTGTCGCGCATCGAGAAGTCG
TGGGCCGACTATTCCGCAGACCACCGGACTGCCGCCGAGAAGGAAATCATCGAGTCGCTGGTCCCCACCCTG
GAACAGGTCAAGCGGATGACCCTGGCATACGGCGAGCAGGCCAGGGCCGGAAGCCTGCGAAACGTCGAGGCC
GGCACGTTCAATCGCGAGATGTATGGTGCGTTCGATCCGCTGGGAACCGCGCTGTCGACGCTGATCGACCTG
CAACTCAGCGAAGGCGCCAAGCTCAACGAGCAGATGGAGAAACGCTACGACTCCATGCGCACCACCTTCCTG
CTCATCGGCGCCGCAGCCCTGGTCCTCATCGTCGCCGCGGCCTGGTTCATCAGCCTGTCGATCATGCGCCCG
CTTTCCGATCTGCGCGGGGTGATCCGCCGCGTGCAGGACTCCTCGAATCTCACGCTCCGCGCCGATGCGCGC
GGGCGCGACGAAGTGTCCGATACGGCGCGCGCCTTCAATATGATGCTGGAAAGCCAGCAGGCGCTGCTCCGC
CATCTCGCCGAAACGGCCAGGAAGCTGACCGTCACCTCGGACGAGATGAGCGCCATCAGCAACCAGGTCAGC
CATGTCGCCACGTCCCAAGGCGACCAGACCGACATGGTCGCCACGGCGGTACACCAGATGAGCATGGCGGTC
CAGGACGTGGCGCGGAACGCCCAGGCCGCCGCGGCCAGCGCGGAATCGGCGAACAGCGAGGCGCACACCGGA
ACCGGCCTCGTGCATGCGAACCTCGACGCCATCCAGGGCCTGTCGGTCATGGTCGGAGAGGCGGGAGCCGTC
ATCGACACGCTACGCAACAAGACCGATGAAATCAGCACCGTCCTGGAAGTCATCCAGAACATCGCCCAGCAG
ACCAACCTGCTCGCCCTCAATGCCGCGATAGAAGCCGCACGGGCGGGCGAGGCCGGACGCGGGTTCGCGGTG
GTCGCCGATGAAGTGCGCAGCCTGGCCACCAATACGCACAAGGCCACCGAAACCATCCGCGAGATGATCGAA
GCCCTGCAGGCAGGCGCCAGCAGCGCGGTCAGCGTGATGCAGCAGTCACGCGAGCAGGCCCAGGTCAGCGTC
CAGCGCGCCCACGAGGCGGGAAAGGCGCTCGGTCTCATCGCCCAGGCGATCGAAGGCATCGCCCAGAGCAAC
GCGCAGATATCCACGGCGACGGAAGAACAGACCGCCACCGCGAGCGAGGTCAGCCAGAACATCGACTCGCTC
AATGCCAGCATCGGCGAAGTCGCCGAGGGCGCGGTGAAGACCTCCACCTCCAGTGTCGAGCTGGCGAAGCTG
GCAAACGGGCTGGAGCAGCAGATCCAGCGCTTCACCGTCTAG
Translation:
MLTGVTVRIRLLVLALLPLTMLVTVIAMALANASRLDASFQDLFNNRMKPISQLKIVADAVAVSVVDALHKY
RAGVFDEERLQQELSGALSRIEKSWADYSADHRTAAEKEIIESLVPTLEQVKRMTLAYGEQARAGSLRNVEA
GTFNREMYGAFDPLGTALSTLIDLQLSEGAKLNEQMEKRYDSMRTTFLLIGAAALVLIVAAAWFISLSIMRP
LSDLRGVIRRVQDSSNLTLRADARGRDEVSDTARAFNMMLESQQALLRHLAETARKLTVTSDEMSAISNQVS
HVATSQGDQTDMVATAVHQMSMAVQDVARNAQAAAASAESANSEAHTGTGLVHANLDAIQGLSVMVGEAGAV
IDTLRNKTDEISTVLEVIQNIAQQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLATNTHKATETIREMIE
ALQAGASSAVSVMQQSREQAQVSVQRAHEAGKALGLIAQAIEGIAQSNAQISTATEEQTATASEVSQNIDSL
NASIGEVAEGAVKTSTSSVELAKLANGLEQQIQRFTV*
AnnotationID:771GeneID:762
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 11:11:41
Gene Name:
Confidence Code:3
GeneProduct:putative methyl-accepting chemotaxis protein
Cell Localization:()
Synonyms:PA4915
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0840,smart00283,pfam00015
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN56570.1|AE015795_4 (AE015795) methyl-accepting chemotaxis protein [Shewanella
           oneidensis MR-1]
          Length = 541

 Score =  301 bits (770), Expect = 9e-81
 Identities = 176/541 (32%), Positives = 300/541 (55%), Gaps = 5/541 (0%)






 
Structural Features:
COG0840, Tar, Methyl-accepting chemotaxis protein 
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 408 residues,  88.2% aligned
Score =  169 bits (427), Expect = 1e-42
Identities = 128/364 (35%), Positives = 209/364 (57%), Gaps = 4/364 (1%)

smart00283, MA, Methyl-accepting chemotaxis-like domains 
(chemotaxis sensory transducer).
CD-Length = 262 residues,  99.2% aligned
Score =  163 bits (415), Expect = 4e-41
Identities = 97/260 (37%), Positives = 156/260 (60%)

pfam00015, MCPsignal, Methyl-accepting chemotaxis protein (MCP) signaling domain. 
CD-Length = 251 residues,  98.8% aligned
Score =  145 bits (366), Expect = 2e-35
Identities = 93/248 (37%), Positives = 143/248 (57%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1527




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18669




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35153




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:762_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:762
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1342
                           PA4915_tr
                           translation of PA4915
                           541
                           99.44
                           99.99
                           0
                           2580.0
     

     
     
49787
                           gb|AAG08300.1|AE004904_8
                           (AE004904) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
                           541
                           99.44
                           99.99
                           0
                           2580.0
     

     
     
49788
                           gb|AAN57027.1|AE015836_9
                           (AE015836) methyl-accepting chemotaxis protein [Shewanella oneidensis MR-1]
                           650
                           29.69
                           46.61
                           125
                           670.0
     

     
     
49789
                           gb|AAO55532.1|
                           (AE016862) aerotaxis receptor [Pseudomonas syringae pv. tomato str. DC3000]
                           598
                           28.59
                           42.14
                           134
                           504.0
     

     
     
49790
                           gb|AAN67724.1|AE016403_9
                           (AE016781) aerotaxis receptor Aer-2 [Pseudomonas putida KT2440]
                           612
                           26.30
                           40.19
                           162
                           481.0
     

     






      

          
GC ORFID: 43764How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4915Glimmer Score: 

          
Start: 5049776Stop: 5051401

          
Length: 1626


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4915 translation of PA4915Homolog Bit Score 998.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7520 (ORF: BLASTX 194.0), t_PA4915 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTTACTGGCGTCACGGTTCGAATCCGCCTGCTGGTCCTGGCGTTGCTGCCCCTGACGATGCTCGTCACG 
GTCATCGCGATGGCGCTGGCCAACGCCAGTCGACTCGATGCCAGCTTCCAGGACCTTTTCAACAACCGGATG 
AAGCCCATCAGCCAGCTCAAGATCGTCGCCGACGCCGTTGCGGTCAGCGTGGTCGACGCCCTGCACAAGTAC 
CGTGCGGGCGTCTTCGATGAAGAGCGCCTGCAGCAGGAGTTGAGTGGGGCGCTGTCGCGCATCGAGAAGTCG 
TGGGCCGACTATTCCGCAGACCACCGGACTGCCGCCGAGAAGGAAATCATCGAGTCGCTGGTCCCCACCCTG 
GAACAGGTCAAGCGGATGACCCTGGCATACGGCGAGCAGGCCAGGGCCGGAAGCCTGCGAAACGTCGAGGCC 
GGCACGTTCAATCGCGAGATGTATGGTGCGTTCGATCCGCTGGGAACCGCGCTGTCGACGCTGATCGACCTG 
CAACTCAGCGAAGGCGCCAAGCTCAACGAGCAGATGGAGAAACGCTACGACTCCATGCGCACCACCTTCCTG 
CTCATCGGCGCCGCAGCCCTGGTCCTCATCGTCGCCGCGGCCTGGTTCATCAGCCTGTCGATCATGCGCCCG 
CTTTCCGATCTGCGCGGGGTGATCCGCCGCGTGCAGGACTCCTCGAATCTCACGCTCCGCGCCGATGCGCGC 
GGGCGCGACGAAGTGTCCGATACGGCGCGCGCCTTCAATATGATGCTGGAAAGCCAGCAGGCGCTGCTCCGC 
CATCTCGCCGAAACGGCCAGGAAGCTGACCGTCACCTCGGACGAGATGAGCGCCATCAGCAACCAGGTCAGC 
CATGTCGCCACGTCCCAAGGCGACCAGACCGACATGGTCGCCACGGCGGTACACCAGATGAGCATGGCGGTC 
CAGGACGTGGCGCGGAACGCCCAGGCCGCCGCGGCCAGCGCGGAATCGGCGAACAGCGAGGCGCACACCGGA 
ACCGGCCTCGTGCATGCGAACCTCGACGCCATCCAGGGCCTGTCGGTCATGGTCGGAGAGGCGGGAGCCGTC 
ATCGACACGCTACGCAACAAGACCGATGAAATCAGCACCGTCCTGGAAGTCATCCAGAACATCGCCCAGCAG 
ACCAACCTGCTCGCCCTCAATGCCGCGATAGAAGCCGCACGGGCGGGCGAGGCCGGACGCGGGTTCGCGGTG 
GTCGCCGATGAAGTGCGCAGCCTGGCCACCAATACGCACAAGGCCACCGAAACCATCCGCGAGATGATCGAA 
GCCCTGCAGGCAGGCGCCAGCAGCGCGGTCAGCGTGATGCAGCAGTCACGCGAGCAGGCCCAGGTCAGCGTC 
CAGCGCGCCCACGAGGCGGGAAAGGCGCTCGGTCTCATCGCCCAGGCGATCGAAGGCATCGCCCAGAGCAAC 
GCGCAGATATCCACGGCGACGGAAGAACAGACCGCCACCGCGAGCGAGGTCAGCCAGAACATCGACTCGCTC 
AATGCCAGCATCGGCGAAGTCGCCGAGGGCGCGGTGAAGACCTCCACCTCCAGTGTCGAGCTGGCGAAGCTG 
GCAAACGGGCTGGAGCAGCAGATCCAGCGCTTCACCGTCTAG