ViewGene
Locus Name:
GeneID:
Location:

GeneID:760
TrivialName: PA14_56450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56450
PAO1 Ortholog Locus:PA4342
Sequence Length:1485
Protein Length:494
Start: 5035462
Stop: 5033978
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07730.1|AE004850_8 (AE004850) probable amidase [Pseudomonas aeruginosa PAO1]
Identities = 493/494 (99%), Positives = 493/494 (99%)
Sequence:
ATGAGCGCCACCCGCCATCGAAGCGACGGCCACGAGGAAATCGTCGCGCTTGACGCGCTGCCGCTGTCCGCG
GCGATCCGCCGACGCGAACTATCCTGCCGCGAGGTCATGCAGGCCTACCTGGCGCAGATCGAACGGTTCAAC
CCGCGGGTCAACGCCATCGTCTCGCTGCAGGCGGAAAGCCGTCTGCTCGCCCAGGCCGACGAGCGCGACCGG
CAACTGGCGCGCGGCGAATGGCTGGGCTGGATGCACGGCATGCCGCAGGCGATCAAGGACCTCGCCGCCACC
TCCGGCATTCCTACCACCCTGGGTTCGCCGCTGTTCGCCGGGCAGGTGCCGGAGCACGACGCAATCGTCGTC
GAGCGGGTGAAGAGCAGCGGTGCGATCGTCATCGGCAAGACCAACGTACCGGAGTTCGGGCTCGGCTCGCAG
ACCTACAACCCGCTGTTCGGCACCACCCGCAATGCCTACGATCCGGCGCGGATCGCCGGCGGCAGCAGCGGT
GGGGCGGCGGTGGCGCTGGCGCTGCGCATGCTGCCGGTGGCCGACGGCAGCGACATGATGGGTTCGCTGCGC
AACCCCGCCGCCTACAACAACGTCTACGGCTTCCGCCCGTCCCAGGGACGGGTGCCGCACGGCCCGCAAGCG
GAACTGTTCGTTCAGCAACTGGCCACCGAAGGCCCGATGGGGCGCAGCGTGGCCGACCTGGCCCGGCTGCTG
GCCACCCAGGCCGGCTACGATCCGCGCTGTCCGCTGTCGTTGCGCGACGATCCGCGCAGGTTCGCCGACGAC
CTCGGGCGCGACTTCCGCGGAGCCCGGCTCGGCTGGCTCGGCGACTACGCCGGCTACCTGCCGATGGAGGAG
GGCGTGCTGGAGCTTTGCGAAGCCGCGCTGGGCGATTTCGCCGAGCTGGGCTGCGACGTCGAGGCGTGCCTG
CCGGACTATCCCCTGGAGCGCCTGTGGCGCACCTGGCTGGTCCATCGCCAGTGGCTGGTGCAGGGCTCGCTT
GGCGAGCTTTACGCCGATCCCGCACGGCGCGTCCGACTCAAGCCGGAGGCGCAGTGGGAAGTGGAGTCCGGG
CTCGGCCTCGGCGCCGCCGAGGTCTATCGCGCCTCGCTGGATCGCAGCGACTGGTATCGGGCGCTGGCGCGT
CTGTTCGAACGTTACGATTTCCTCTTGCTGCCCAGCGCCCAGGTGTTTCCTTTCGATGCAGAAACGGCGTGG
CCGCGGCAGGTCGCCGGGCGGCCGATGGACACCTATCACCGCTGGATGGAGGTGGTGATCGGCCCGACCCTG
GCCGGTTTGCCGGCGATCAGCGTACCTATCGGCTTCGGCGCGGCGGGCCTGCCGATGGGATTGCAGATCATC
GGCCCGGCGCAGGCCGACCTGGCGGTGCTGCAACTGGCCCATGCCCACGAGGGCCTGACCCGTTGGGTCAGC
CGCCGTCCGCCGGCGATGCTCGAGGCTCCAGGGGGAATCGACTAG
Translation:
MSATRHRSDGHEEIVALDALPLSAAIRRRELSCREVMQAYLAQIERFNPRVNAIVSLQAESRLLAQADERDR
QLARGEWLGWMHGMPQAIKDLAATSGIPTTLGSPLFAGQVPEHDAIVVERVKSSGAIVIGKTNVPEFGLGSQ
TYNPLFGTTRNAYDPARIAGGSSGGAAVALALRMLPVADGSDMMGSLRNPAAYNNVYGFRPSQGRVPHGPQA
ELFVQQLATEGPMGRSVADLARLLATQAGYDPRCPLSLRDDPRRFADDLGRDFRGARLGWLGDYAGYLPMEE
GVLELCEAALGDFAELGCDVEACLPDYPLERLWRTWLVHRQWLVQGSLGELYADPARRVRLKPEAQWEVESG
LGLGAAEVYRASLDRSDWYRALARLFERYDFLLLPSAQVFPFDAETAWPRQVAGRPMDTYHRWMEVVIGPTL
AGLPAISVPIGFGAAGLPMGLQIIGPAQADLAVLQLAHAHEGLTRWVSRRPPAMLEAPGGID*
AnnotationID:769GeneID:760
AnnotatorUID: diggins
Modification Date/Time: 2005-06-09 07:07:05
Gene Name:
Confidence Code:3
GeneProduct:putative amidase
Cell Localization:()
Synonyms:PA4342
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01425
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB50134.1| (AP003001) amidotransferase, subunit A [Mesorhizobium loti]
          Length = 472

 Score =  494 bits (1273), Expect = e-139
 Identities = 252/466 (54%), Positives = 328/466 (70%), Gaps = 3/466 (0%)

>gb|AAN34266.1|AE014602_7 (AE014602) amidase family protein [Brucella suis 1330]
          Length = 472

 Score =  410 bits (1054), Expect = e-114
 Identities = 211/475 (44%), Positives = 292/475 (61%), Gaps = 7/475 (1%)







 
Structural Features:
pfam01425, Amidase
CD-Length = 433 residues, 100.0% aligned
Score =  288 bits (738), Expect = 1e-78
Identities = 156/439 (35%), Positives = 219/439 (49%), Gaps = 13/439 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1523




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18665




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36687




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:760_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:760
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1339
                           PA4342_tr
                           translation of PA4342
                           494
                           99.79
                           99.79
                           0
                           2581.0
     

     
     
49743
                           gb|AAG07730.1|AE004850_8
                           (AE004850) probable amidase [Pseudomonas aeruginosa PAO1]
                           494
                           99.79
                           99.79
                           0
                           2581.0
     

     
     
1340
                           PA0202_tr
                           translation of PA0202
                           494
                           63.36
                           73.68
                           9
                           1623.0
     

     
     
49744
                           gb|AAG03591.1|AE004458_6
                           (AE004458) probable amidase [Pseudomonas aeruginosa PAO1]
                           494
                           63.36
                           73.68
                           9
                           1623.0
     

     
     
49745
                           dbj|BAB50134.1|
                           (AP003001) amidotransferase, subunit A [Mesorhizobium loti]
                           495
                           51.11
                           66.66
                           24
                           1266.0
     

     






      

          
GC ORFID: 43762How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4342Glimmer Score: 

          
Start: 4299138Stop: 4297654

          
Length: 1485


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4342 translation of PA4342Homolog Bit Score 998.0

          
Other Homologs:  t_PA0202 (ORF: BLASTX 634.0), t_PA4342 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCCACCCGCCATCGAAGCGACGGCCACGAGGAAATCGTCGCGCTTGACGCGCTGCCGCTGTCCGCG 
GCGATCCGCCGACGCGAACTATCCTGCCGCGAGGTCATGCAGGCCTACCTGGCGCAGATCGAACGGTTCAAC 
CCGCGGGTCAACGCCATCGTCTCGCTGCAGGCGGAAAGCCGTCTGCTCGCCCAGGCCGACGAGCGCGACCGG 
CAACTGGCGCGCGGCGAATGGCTGGGCTGGATGCACGGCATGCCGCAGGCGATCAAGGACCTCGCCGCCACC 
TCCGGCATTCCTACCACCCTGGGTTCGCCGCTGTTCGCCGGGCAGGTGCCGGAGCACGACGCAATCGTCGTC 
GAGCGGGTGAAGAGCAGCGGTGCGATCGTCATCGGCAAGACCAACGTACCGGAGTTCGGGCTCGGCTCGCAG 
ACCTACAACCCGCTGTTCGGCACCACCCGCAATGCCTACGATCCGGCGCGGATCGCCGGCGGCAGCAGCGGT 
GGGGCGGCGGTGGCGCTGGCGCTGCGCATGCTGCCGGTGGCCGACGGCAGCGACATGATGGGTTCGCTGCGC 
AACCCCGCCGCCTACAACAACGTCTACGGCTTCCGCCCGTCCCAGGGACGGGTGCCGCACGGCCCGCAAGCG 
GAACTGTTCGTTCAGCAACTGGCCACCGAAGGCCCGATGGGGCGCAGCGTGGCCGACCTGGCCCGGCTGCTG 
GCCACCCAGGCCGGCTACGATCCGCGCTGTCCGCTGTCGTTGCGCGACGATCCGCGCAGGTTCGCCGACGAC 
CTCGGGCGCGACTTCCGCGGAGCCCGGCTCGGCTGGCTCGGCGACTACGCCGGCTACCTGCCGATGGAGGAG 
GGCGTGCTGGAGCTTTGCGAAGCCGCGCTGGGCGATTTCGCCGAGCTGGGCTGCGACGTCGAGGCGTGCCTG 
CCGGACTATCCCCTGGAGCGCCTGTGGCGCACCTGGCTGGTCCATCGCCAGTGGCTGGTGCAGGGCTCGCTT 
GGCGAGCTTTACGCCGATCCCGCACGGCGCGTCCGACTCAAGCCGGAGGCGCAGTGGGAAGTGGAGTCCGGG 
CTCGGCCTCGGCGCCGCCGAGGTCTATCGCGCCTCGCTGGATCGCAGCGACTGGTATCGGGCGCTGGCGCGT 
CTGTTCGAACGTTACGATTTCCTCTTGCTGCCCAGCGCCCAGGTGTTTCCTTTCGATGCAGAAACGGCGTGG 
CCGCGGCAGGTCGCCGGGCGGCCGATGGACACCTATCACCGCTGGATGGAGGTGGTGATCGGCCCGACCCTG 
GCCGGTTTGCCGGCGATCAGCGTACCTATCGGCTTCGGCGCGGCGGGCCTGCCGATGGGATTGCAGATCATC 
GGCCCGGCGCAGGCCGACCTGGCGGTGCTGCAACTGGCCCATGCCCACGAGGGCCTGACCCGTTGGGTCAGC 
CGCCGTCCGCCGGCGATGCTCGAGGCTCCAGGGGGAATCGACTAG