ViewGene
Locus Name:
GeneID:
Location:

GeneID:758
TrivialName: PA14_26280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26280
PAO1 Ortholog Locus:PA2920
Sequence Length:1638
Protein Length:545
Start: 2293121
Stop: 2294758
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06308.1|AE004718_5 (AE004718) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
Identities = 537/545 (98%), Positives = 541/545 (99%)
Sequence:
ATGCTGCAATGGTTCGCTAACCTATCGTTCCGCAGGAAAATCGCCCTGCCGATCCTCCTGCTCGCGGTGCTT
CTGCTGCTGGTGGGCGCGCTCGGCGTGCATGGCATCGCCCAGCAGAACGAATCCAACCAGCGCCTGGGCAAG
CGTTTTCTCCCCGGCATCGCCCTGCTGCTCAACGCCGACCGCGATCTCTACCAGGCCTTCGTCGCCGAGCGC
AGCCTGCTCGATAGCCTCCTGAACGCCGAGCAGATCGCCGGCCTGAGGAACGATCACGCGGAAAACCTGCAG
CAGGCCCTGGATCGGGTGCGCCAGTACGCGGCGATGCAGCCGGGCGAGGCGGAACTGGCCAAGGTCGCCGAG
TTCGAGCGCGGCTATGCCCTCTGGAGCGCGACCTCGGCGCGGGTGCTGAGCCTGGCGGCCAGCGATCCGAGC
GCCGCGGCGCAGCTCAGCTACGGTGACAGCGATCGCCAGTTCGGGGCGATGCGCGAGGTGATCAACCAGCTC
GATGAGATGGAAGAGGCGGCCGCGGCCGCCGACGGCGAGGCGTCCTCCGCGCTGGGCGAGCGCCACCGCTGG
CAGCAGGTGGCGCTGGTGGCGTTCGGCCTGCTGGTGTGCCTGTCGCTGGTACTGGTGTTCCCCGGCCTGGTG
ACCCGTCCGTTGCAGCGCCTGCTGCAACGCCTGGAAGAGATCGCCAACGGCGATGGCGACCTGCGCGTGCGC
CTGGAGGTCACTTCGCGCGACGAACCCGGCCGCCTCGGCAGCGCCTTCAACGCCTTCCTCGACAAGTTGCAG
CCGCTGATCCGCGAGGTCGGCCGGGTCACCGGCGAGGTCGCCGATTCCGCCGGTTCGCTGGCCGGCATGACC
GCCGCCAACGATCGTCTGATCAACAGCGAGCACGCGTCGGTGGACCAGGTCAGCACCGCCGCGACGCAGATG
AGCAGCGCCGTCCACGAGGTGGCGCGCAACGCCCAGAGCGCCGCGCAGGTGGCCCATGACGCCCGCCGGCAG
GCGCGCGAGGGCGCCAACGTGGTGGAGGCGACCATCGAGGTGATCCGCCAGTTGGCGCGAGAAGTGGAGAGC
AGTTCCGAGAGCATCCAGCAACTGGCCCAGGAAACCGCCAGCATCGACGCGGTGCTGACGGTGATCAAGGGC
ATCGCCGAACAGACCAACCTGCTCGCCCTCAACGCCGCCATCGAAGCCGCGCGGGCCGGCGAGCAGGGTCGC
GGTTTCGCCGTGGTGGCCGACGAGGTGCGGGCGCTGGCGGCGCGCACCCAGGAGTCGACCAAGGACATCCAG
GCGCGCATCGAGCGTCTCCAGGCCGGGGTGCAGAACGCCGTGCGGGCCATGCAGTCGGGCAGCCTCAAGGCG
CGCGACAGCGTCGAGCGCGCCGCCGGGGTCGACGGCGTGCTGGCCGCCACCGGCGACGCGGTGGGGCGGATC
AACGACCTCGCCGCGCAGATCGCCTCGGCCTGCGAGGAGCAGAGCCGGGTGATCGACGAAATCGCCCGCAAC
ATCAGCGAGGTGCGCGAGCTTTCCGCCCAGGCGGCGGAGCATTCGGAGCAGGGCACCGGGGCCAGCCGCCGG
CTGTCCGAGCTGTCCTCGGAACTGGCGCGGCTGGTCGGGCGTTTCCGCGTCTGA
Translation:
MLQWFANLSFRRKIALPILLLAVLLLLVGALGVHGIAQQNESNQRLGKRFLPGIALLLNADRDLYQAFVAER
SLLDSLLNAEQIAGLRNDHAENLQQALDRVRQYAAMQPGEAELAKVAEFERGYALWSATSARVLSLAASDPS
AAAQLSYGDSDRQFGAMREVINQLDEMEEAAAAADGEASSALGERHRWQQVALVAFGLLVCLSLVLVFPGLV
TRPLQRLLQRLEEIANGDGDLRVRLEVTSRDEPGRLGSAFNAFLDKLQPLIREVGRVTGEVADSAGSLAGMT
AANDRLINSEHASVDQVSTAATQMSSAVHEVARNAQSAAQVAHDARRQAREGANVVEATIEVIRQLAREVES
SSESIQQLAQETASIDAVLTVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQESTKDIQ
ARIERLQAGVQNAVRAMQSGSLKARDSVERAAGVDGVLAATGDAVGRINDLAAQIASACEEQSRVIDEIARN
ISEVRELSAQAAEHSEQGTGASRRLSELSSELARLVGRFRV*
AnnotationID:767GeneID:758
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 08:08:14
Gene Name:
Confidence Code:3
GeneProduct:putative chemotaxis transducer
Cell Localization:()
Synonyms:PA2920
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:putative methyl-accepting chemotaxis protein
Functional Category Confidence Code:5
COGs:COG0840,smart00283,pfam00015
Secondary Functional Category(ies):adaptation, protection
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56857.1| (AE016868) methyl-accepting chemotaxis protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 559

 Score =  269 bits (688), Expect = 3e-71
 Identities = 158/379 (41%), Positives = 229/379 (60%), Gaps = 3/379 (0%)








 
Structural Features:
COG0840, Tar, Methyl-accepting chemotaxis protein 
[Cell motility and secretion / Signal transduction mechanisms]

pfam00015, MCPsignal, Methyl-accepting chemotaxis protein (MCP) signaling domain.

smart00283, MA, Methyl-accepting chemotaxis-like domains 
(chemotaxis sensory transducer).






   
Genomic Context:






   
Comment:


















    ReferenceID:1519




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18661




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36128




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:758_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:758
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1332
                           PA2920_tr
                           translation of PA2920
                           545
                           98.53
                           99.26
                           0
                           2579.0
     

     
     
49680
                           gb|AAG06308.1|AE004718_5
                           (AE004718) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
                           545
                           98.53
                           99.26
                           0
                           2579.0
     

     
     
49681
                           gb|AAO56857.1|
                           (AE016868) methyl-accepting chemotaxis protein [Pseudomonas syringae pv. tomato str. DC3000]
                           588
                           33.67
                           50.85
                           72
                           725.0
     

     
     
49682
                           gb|AAG06040.1|AE004694_3
                           (AE004694) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
                           594
                           32.82
                           47.81
                           82
                           702.0
     

     
     
1333
                           PA2652_tr
                           translation of PA2652
                           594
                           32.82
                           47.81
                           82
                           702.0
     

     






      

          
GC ORFID: 43760How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2920Glimmer Score: 

          
Start: 2660804Stop: 2659167

          
Length: 1638


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2920 translation of PA2920Homolog Bit Score 998.0

          
Other Homologs:  t_PA2652 (ORF: BLASTX 269.0), t_PA2867 (ORF: BLASTX 187.0), t_PA2920 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGCAATGGTTCGCTAACCTATCGTTCCGCAGGAAAATCGCCCTGCCGATCCTCCTGCTCGCGGTGCTT 
CTGCTGCTGGTGGGCGCGCTCGGCGTGCATGGCATCGCCCAGCAGAACGAATCCAACCAGCGCCTGGGCAAG 
CGTTTTCTCCCCGGCATCGCCCTGCTGCTCAACGCCGACCGCGATCTCTACCAGGCCTTCGTCGCCGAGCGC 
AGCCTGCTCGATAGCCTCCTGAACGCCGAGCAGATCGCCGGCCTGAGGAACGATCACGCGGAAAACCTGCAG 
CAGGCCCTGGATCGGGTGCGCCAGTACGCGGCGATGCAGCCGGGCGAGGCGGAACTGGCCAAGGTCGCCGAG 
TTCGAGCGCGGCTATGCCCTCTGGAGCGCGACCTCGGCGCGGGTGCTGAGCCTGGCGGCCAGCGATCCGAGC 
GCCGCGGCGCAGCTCAGCTACGGTGACAGCGATCGCCAGTTCGGGGCGATGCGCGAGGTGATCAACCAGCTC 
GATGAGATGGAAGAGGCGGCCGCGGCCGCCGACGGCGAGGCGTCCTCCGCGCTGGGCGAGCGCCACCGCTGG 
CAGCAGGTGGCGCTGGTGGCGTTCGGCCTGCTGGTGTGCCTGTCGCTGGTACTGGTGTTCCCCGGCCTGGTG 
ACCCGTCCGTTGCAGCGCCTGCTGCAACGCCTGGAAGAGATCGCCAACGGCGATGGCGACCTGCGCGTGCGC 
CTGGAGGTCACTTCGCGCGACGAACCCGGCCGCCTCGGCAGCGCCTTCAACGCCTTCCTCGACAAGTTGCAG 
CCGCTGATCCGCGAGGTCGGCCGGGTCACCGGCGAGGTCGCCGATTCCGCCGGTTCGCTGGCCGGCATGACC 
GCCGCCAACGATCGTCTGATCAACAGCGAGCACGCGTCGGTGGACCAGGTCAGCACCGCCGCGACGCAGATG 
AGCAGCGCCGTCCACGAGGTGGCGCGCAACGCCCAGAGCGCCGCGCAGGTGGCCCATGACGCCCGCCGGCAG 
GCGCGCGAGGGCGCCAACGTGGTGGAGGCGACCATCGAGGTGATCCGCCAGTTGGCGCGAGAAGTGGAGAGC 
AGTTCCGAGAGCATCCAGCAACTGGCCCAGGAAACCGCCAGCATCGACGCGGTGCTGACGGTGATCAAGGGC 
ATCGCCGAACAGACCAACCTGCTCGCCCTCAACGCCGCCATCGAAGCCGCGCGGGCCGGCGAGCAGGGTCGC 
GGTTTCGCCGTGGTGGCCGACGAGGTGCGGGCGCTGGCGGCGCGCACCCAGGAGTCGACCAAGGACATCCAG 
GCGCGCATCGAGCGTCTCCAGGCCGGGGTGCAGAACGCCGTGCGGGCCATGCAGTCGGGCAGCCTCAAGGCG 
CGCGACAGCGTCGAGCGCGCCGCCGGGGTCGACGGCGTGCTGGCCGCCACCGGCGACGCGGTGGGGCGGATC 
AACGACCTCGCCGCGCAGATCGCCTCGGCCTGCGAGGAGCAGAGCCGGGTGATCGACGAAATCGCCCGCAAC 
ATCAGCGAGGTGCGCGAGCTTTCCGCCCAGGCGGCGGAGCATTCGGAGCAGGGCACCGGGGCCAGCCGCCGG 
CTGTCCGAGCTGTCCTCGGAACTGGCGCGGCTGGTCGGGCGTTTCCGCGTCTGA