ViewGene

Locus Name:
GeneID:
Location:

GeneID:756
TrivialName: PA14_30820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30820
PAO1 Ortholog Locus:PA2573
Sequence Length:1608
Protein Length:535
Start: 2673094
Stop: 2674701
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05961.1|AE004685_7 (AE004685) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
Identities = 532/535 (99%), Positives = 535/535 (100%)
Sequence:
ATGAACATTCGGCAGAGGATCCTCGCTTCGGGCGCCATCGGCATCGTGGCTGTGGTGCTGCTCGGCGGGGTC
GGCTTCTGGGGGCAATTGCGGTTGGGCAAGGCGCTGACGGAGAACGAGCTGAGCGTCAATGCGCTGCGCAAC
CACATGGAAGGCGACATGATGCACGACGCCTTGCGCGCCGACGTCCTGGCGGCGTTCGTGGTCCAGCCCGGC
GACGGCGCGGCGGCCGAGCAGGTCCGCGAGGACCTGCAGGAGCACAGTCAGTGGTTTCGCAAGGTAGTCGAG
CAGAACCAGGGGCTGCCTCTCAACGACGCCATCCACCAGGCGCTGGTCGAGTTGCGGCCCGACCTGGAAGCC
TACATCGGCGCCGCCGAGAGCATCGTCGGCAAGGCGTTGCTCGATCCCGTGGCGGCGCGGGCCGAGCTGCCG
CAGTTCGTCCAGGCCTTCAAGGATCTGGAAGGGCGCAACGAAGCGCTCAGCAGCCTGATCGAGAAACACGTC
GAGCAGACCAACCGGGCGCGCGAAGACAGCATGCGCTATTCCGCCTGGATGCTCGCGGGCGGCATCCTGGTC
GCCTGCCTGGTCCTCGGACAGCTCTGTCGCCAGTTGCTGCGCGCCGTCCTGCAGCCGCTGCGCAAACTGGTC
TCATCGGCCCGGGTGATCGCCCAGGGCAACCTGCAGGAGCCGATCGGCGTCGACAGCAATGACGAGGCCGGC
CAGTTGCAGCGGGCGTTGGGCGAGATGCAGGAGAACCTGCGGCAGATGATCACCATCATCCGCCAGGAAAGC
GAAGAGCTCCACGACACCTCCCAGTCCATCGGCCAGACCTCGCAGTCGATCGTCCACGGCGCCAGCCAACAG
GCCGACAGCGCCACCAGCATGGCTGCGAGCATGGAAGAGATGATCACCAATATCTCGCAGATTTCCGACCAC
GCCGACAACGCCAGGGTGATCTCGGCCAAGTCCGAGGAGCTGGCCAGCAGTGGCGGACAGGTGATCCTCAAC
GTGGTGGAAGGGATGAGCCGCATCGCCGACGTGGTCAACCAGTCCTCCACCAGCATCACCGCTCTCGGCCAG
TCGTCGGACGAGATCCATTCGATCATCCAGGTGATCAAGGGGATCGCCGAGCAGACCAACCTGCTGGCATTG
AACGCCGCCATCGAGGCGGCGCGGGCCGGAGAGGCCGGGCGCGGTTTCGCCGTGGTCGCCGACGAGGTGCGC
GGGCTGGCGGCGCGGACCACCCAGTCGACCCAGGAGATCACCGCGATGATCGAGCGTATCCGCGCCAGCACG
GGGCAGGCGATCAACAGCATGGAGGCCGGCGTGAGCCGGGTCAACGAGGGTGTGTCGTTCGCTCGTCAGGCT
GGGGTATCGATCAACGAGATCCTCGATGGAACCCGTCATGCCGCGTCGGTGGTCGACGAAATTTCCCAGACC
ATCCGCGAACAGTCGCGCGCCAGCGATGAAATCGCCCAGCGCGTGGAGCTCATCGCCCAGCGTTCGCAGCAG
AACACCCAGGCGATGCACGAGATGGCCGCCACCGCCAGGCGCCTGAACGAGGTTGCGGCGACCATGCGCTCG
TCGGTGGAGCGCTTCAAGATCTGA
Translation:
MNIRQRILASGAIGIVAVVLLGGVGFWGQLRLGKALTENELSVNALRNHMEGDMMHDALRADVLAAFVVQPG
DGAAAEQVREDLQEHSQWFRKVVEQNQGLPLNDAIHQALVELRPDLEAYIGAAESIVGKALLDPVAARAELP
QFVQAFKDLEGRNEALSSLIEKHVEQTNRAREDSMRYSAWMLAGGILVACLVLGQLCRQLLRAVLQPLRKLV
SSARVIAQGNLQEPIGVDSNDEAGQLQRALGEMQENLRQMITIIRQESEELHDTSQSIGQTSQSIVHGASQQ
ADSATSMAASMEEMITNISQISDHADNARVISAKSEELASSGGQVILNVVEGMSRIADVVNQSSTSITALGQ
SSDEIHSIIQVIKGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAARTTQSTQEITAMIERIRAST
GQAINSMEAGVSRVNEGVSFARQAGVSINEILDGTRHAASVVDEISQTIREQSRASDEIAQRVELIAQRSQQ
NTQAMHEMAATARRLNEVAATMRSSVERFKI*
AnnotationID:765GeneID:756
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 07:07:53
Gene Name:
Confidence Code:3
GeneProduct:putative methyl-accepting chemotaxis transducer
Cell Localization:()
Synonyms:PA2573
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0840,smart00283,pfam00015
Secondary Functional Category(ies):adaptation, protection
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO53671.1| (AE016856) methyl-accepting chemotaxis protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 658

 Score =  223 bits (568), Expect = 2e-57
 Identities = 132/349 (37%), Positives = 202/349 (57%)

Structural Features:
COG0840, Tar, Methyl-accepting chemotaxis protein 
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 408 residues,  96.8% aligned
Score =  188 bits (478), Expect = 1e-48
Identities = 142/398 (35%), Positives = 218/398 (54%), Gaps = 3/398 (0%)

smart00283, MA, Methyl-accepting chemotaxis-like domains 
(chemotaxis sensory transducer). 
CD-Length = 262 residues,  99.6% aligned
Score =  179 bits (456), Expect = 6e-46
Identities = 104/261 (39%), Positives = 160/261 (61%)

pfam00015, MCPsignal, Methyl-accepting chemotaxis protein (MCP) signaling domain.
CD-Length = 251 residues,  99.2% aligned
Score =  164 bits (416), Expect = 2e-41
Identities = 101/249 (40%), Positives = 149/249 (59%)
Genomic Context:
Comment:
ReferenceID:1515
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18657
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33141
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:756_cdd.html
URL:
Homologs By Global Alignment
Gene ID:756

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1329 PA2573_tr translation of PA2573 535 99.43 99.99 0 2583.0
49619 gb|AAG05961.1|AE004685_7 (AE004685) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1] 535 99.43 99.99 0 2583.0
49620 gb|AAQ61816.1| (AE016924) probable methyl-accepting chemotaxis transducer [Chromobacterium violaceum ATCC 12472] 603 31.50 46.60 124 653.0
49621 gb|AAQ60134.1| (AE016918) probable methyl-accepting chemotaxis protein [Chromobacterium violaceum ATCC 12472] 599 31.21 46.57 119 602.0
1330 PA1423_tr translation of PA1423 555 24.14 37.65 158 372.0
GC ORFID: 43758How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2573Glimmer Score:
Start: 2280832Stop: 2279225
Length: 1608
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2573 translation of PA2573Homolog Bit Score 999.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene1211 (ORF: BLASTX 390.0), psyr_15may02_Scaffold1_revised_gene1184 (ORF: BLASTX 260.0), t_PA2573 (ORF: GLIMMER)
GC ORF Sequence
ATGAACATTCGGCAGAGGATCCTCGCTTCGGGCGCCATCGGCATCGTGGCTGTGGTGCTGCTCGGCGGGGTC
GGCTTCTGGGGGCAATTGCGGTTGGGCAAGGCGCTGACGGAGAACGAGCTGAGCGTCAATGCGCTGCGCAAC
CACATGGAAGGCGACATGATGCACGACGCCTTGCGCGCCGACGTCCTGGCGGCGTTCGTGGTCCAGCCCGGC
GACGGCGCGGCGGCCGAGCAGGTCCGCGAGGACCTGCAGGAGCACAGTCAGTGGTTTCGCAAGGTAGTCGAG
CAGAACCAGGGGCTGCCTCTCAACGACGCCATCCACCAGGCGCTGGTCGAGTTGCGGCCCGACCTGGAAGCC
TACATCGGCGCCGCCGAGAGCATCGTCGGCAAGGCGTTGCTCGATCCCGTGGCGGCGCGGGCCGAGCTGCCG
CAGTTCGTCCAGGCCTTCAAGGATCTGGAAGGGCGCAACGAAGCGCTCAGCAGCCTGATCGAGAAACACGTC
GAGCAGACCAACCGGGCGCGCGAAGACAGCATGCGCTATTCCGCCTGGATGCTCGCGGGCGGCATCCTGGTC
GCCTGCCTGGTCCTCGGACAGCTCTGTCGCCAGTTGCTGCGCGCCGTCCTGCAGCCGCTGCGCAAACTGGTC
TCATCGGCCCGGGTGATCGCCCAGGGCAACCTGCAGGAGCCGATCGGCGTCGACAGCAATGACGAGGCCGGC
CAGTTGCAGCGGGCGTTGGGCGAGATGCAGGAGAACCTGCGGCAGATGATCACCATCATCCGCCAGGAAAGC
GAAGAGCTCCACGACACCTCCCAGTCCATCGGCCAGACCTCGCAGTCGATCGTCCACGGCGCCAGCCAACAG
GCCGACAGCGCCACCAGCATGGCTGCGAGCATGGAAGAGATGATCACCAATATCTCGCAGATTTCCGACCAC
GCCGACAACGCCAGGGTGATCTCGGCCAAGTCCGAGGAGCTGGCCAGCAGTGGCGGACAGGTGATCCTCAAC
GTGGTGGAAGGGATGAGCCGCATCGCCGACGTGGTCAACCAGTCCTCCACCAGCATCACCGCTCTCGGCCAG
TCGTCGGACGAGATCCATTCGATCATCCAGGTGATCAAGGGGATCGCCGAGCAGACCAACCTGCTGGCATTG
AACGCCGCCATCGAGGCGGCGCGGGCCGGAGAGGCCGGGCGCGGTTTCGCCGTGGTCGCCGACGAGGTGCGC
GGGCTGGCGGCGCGGACCACCCAGTCGACCCAGGAGATCACCGCGATGATCGAGCGTATCCGCGCCAGCACG
GGGCAGGCGATCAACAGCATGGAGGCCGGCGTGAGCCGGGTCAACGAGGGTGTGTCGTTCGCTCGTCAGGCT
GGGGTATCGATCAACGAGATCCTCGATGGAACCCGTCATGCCGCGTCGGTGGTCGACGAAATTTCCCAGACC
ATCCGCGAACAGTCGCGCGCCAGCGATGAAATCGCCCAGCGCGTGGAGCTCATCGCCCAGCGTTCGCAGCAG
AACACCCAGGCGATGCACGAGATGGCCGCCACCGCCAGGCGCCTGAACGAGGTTGCGGCGACCATGCGCTCG
TCGGTGGAGCGCTTCAAGATCTGA