ViewGene
Locus Name:
GeneID:
Location:

GeneID:754
TrivialName: PA14_39770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39770
PAO1 Ortholog Locus:PA1915
Sequence Length:1548
Protein Length:515
Start: 3542183
Stop: 3543730
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05303.1|AE004617_7 (AE004617) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 511/515 (99%), Positives = 512/515 (99%)
Sequence:
ATGCCGCAGAGCATCCGCCACCTGATCGCCCTCCCCGAACTCCGTTCACGCCTGCTGAGCGGAGCCGGCGGC
CTCGACCGCCCGGTTCGCTGGGCGCATGTCTGCGAACTCGACGACCCCACCGAATGGCTCGGCGAGGGTGAC
CTGCTGATGACCACCGGGCTGGGCATACCGAGCGACGCCGAGCGGCAACGGCGTTACGTCCGAAGACTGGCC
GAGGCCGGCCTGGCAGGCATGATGATCGGCGAGAACATGGAAGCCCCGAGCGACCTCGATGCCCTGCGCGAG
ACGGCCGAGGCCCTGGGCTTCCCGTTGATTCTCACCCACTACGGCGTCCCTTTCGCCGCCGTGACCCGGGCC
ATCGTCGATGCGGGGCAGAAAGACGAATACGAGCGCCGCAACGCCCTGGCCCGGATATACGAAAGCGCCCGG
CTGAGCATGCAGGGACTGGGCCTGCCGGCGCTGCTGCAACGCCTCGGCAAGGACGTGCGGAGCAGCCTCTAC
CTCATCGTTCCCGACACCCTGGCGGCTTGGCAGCCAGGCCTACCAGGGCTGCCCGTGGAGTTGGCCGACGCG
CTGCGCAACCGCCGTCGCGAGCAGGCGGAGCCGCAGCCGATGGTCCTTCGCCATCCGCTCGCGGAAGGTGAA
GCGCTCAGCATCGGCATTCCTTCCGACCGGAACTGCCTGCTGATAGCCCTGGGCGAGCGGCTGCCGGACTAC
AGTCTCCTGCACCACCTGACGGCAGTGCTCGGCATAGAGATCGAACGGCTGCGCGTCGAAAGCGAACGCCAC
CTGCGCCTGGGTTCGGAATTGCTCGACGACCTGCTGCAACGACGGCTATACCGGGAACAAGCCGAGGAGCGG
CTGGAGGAACTGCTGCCCGGGCTCGATCTCGACGATGCAGTCGTTTCCGTGGCAAGTTCCGAGGGGCTCGCG
ACCGACCCTATCGGTCTTTTCCGGGGCCACGACTCACGCCTGCTGGTTCGCGCGCAAGGCCAGGAAATCATT
CTGCTGCACCAGGCCGGCCTCGCCTCGACACTGCAGGAAGCCCTGGACAGCTCGCTGGGAGTGAGCGCTCCG
CTCCGTCGTGCCGAACGTTGCGCCGAGGCCTTGCGCGAAGCGCGCCTGGCCCTGGCCCACAGCCATTCCCGG
CGGCCGTTGTGTCGCTACGCGGAACTGGACGACGAGGCGCCCTGGCTACCCAGAAGCCTCGCCGAGGCTGAG
CGGGCGTTCCGCCTGGTCCTCGGCGCCCTCCACGACTATGACGCGGCCAATGGCTCCGCACTGCTATACACG
CTGCAGGTCTTTCTCGAGGAAAACAGGTCCTGGTTGAACGCCGCGCAGCGGCTACACATACACAAGcAGAGC
CTGGTCTACCGGATACGCCGCATCGAGGAAATCAGCGGTCGCTCGCTGGACAGCACCGCCGATGTGGCGACC
CTCTGGTTCGCCTTGCAGGCAACCCGGCTGTCGCCGgAaacgAgGGGCAGGACGGCGAAGAGCAGCCTCCTG
GAGCAGTCCGCGCACCATGGCGGCGACATGGACTGA
Translation:
MPQSIRHLIALPELRSRLLSGAGGLDRPVRWAHVCELDDPTEWLGEGDLLMTTGLGIPSDAERQRRYVRRLA
EAGLAGMMIGENMEAPSDLDALRETAEALGFPLILTHYGVPFAAVTRAIVDAGQKDEYERRNALARIYESAR
LSMQGLGLPALLQRLGKDVRSSLYLIVPDTLAAWQPGLPGLPVELADALRNRRREQAEPQPMVLRHPLAEGE
ALSIGIPSDRNCLLIALGERLPDYSLLHHLTAVLGIEIERLRVESERHLRLGSELLDDLLQRRLYREQAEER
LEELLPGLDLDDAVVSVASSEGLATDPIGLFRGHDSRLLVRAQGQEIILLHQAGLASTLQEALDSSLGVSAP
LRRAERCAEALREARLALAHSHSRRPLCRYAELDDEAPWLPRSLAEAERAFRLVLGALHDYDAANGSALLYT
LQVFLEENRSWLNAAQRLHIHKQSLVYRIRRIEEISGRSLDSTADVATLWFALQATRLSPETRGRTAKSSLL
EQSAHHGGDMD*
AnnotationID:763GeneID:754
AnnotatorUID: diggins
Modification Date/Time: 2005-06-05 14:02:45
Gene Name:
Confidence Code:3
GeneProduct:putative regulatory protein
Cell Localization:()
Synonyms:PA1915
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2508
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC68502.1| (AP005024) putative transcriptional regulator [Streptomyces
           avermitilis MA-4680]
          Length = 463

 Score =  190 bits (482), Expect = 2e-47
 Identities = 149/473 (31%), Positives = 221/473 (46%), Gaps = 25/473 (5%)






 
Structural Features:
COG2508, COG2508, Regulator of polyketide synthase expression 
[Signal transduction mechanisms / 
Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 421 residues,  98.6% aligned
Score =  171 bits (433), Expect = 2e-43
Identities = 102/436 (23%), Positives = 154/436 (35%), Gaps = 26/436 (5%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1511




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18653




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37028




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:754_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:754
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1327
                           PA1915_tr
                           translation of PA1915
                           515
                           99.22
                           99.41
                           0
                           2582.0
     

     
     
49617
                           gb|AAG05303.1|AE004617_7
                           (AE004617) hypothetical protein PA1915 [Pseudomonas aeruginosa PAO1]
                           515
                           99.22
                           99.41
                           0
                           2582.0
     

     






      

          
GC ORFID: 43756How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1915Glimmer Score: 

          
Start: 1411728Stop: 1410181

          
Length: 1548


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1915 translation of PA1915Homolog Bit Score 999.0

          
Other Homologs:  t_PA1915 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGCAGAGCATCCGCCACCTGATCGCCCTCCCCGAACTCCGTTCACGCCTGCTGAGCGGAGCCGGCGGC 
CTCGACCGCCCGGTTCGCTGGGCGCATGTCTGCGAACTCGACGACCCCACCGAATGGCTCGGCGAGGGTGAC 
CTGCTGATGACCACCGGGCTGGGCATACCGAGCGACGCCGAGCGGCAACGGCGTTACGTCCGAAGACTGGCC 
GAGGCCGGCCTGGCAGGCATGATGATCGGCGAGAACATGGAAGCCCCGAGCGACCTCGATGCCCTGCGCGAG 
ACGGCCGAGGCCCTGGGCTTCCCGTTGATTCTCACCCACTACGGCGTCCCTTTCGCCGCCGTGACCCGGGCC 
ATCGTCGATGCGGGGCAGAAAGACGAATACGAGCGCCGCAACGCCCTGGCCCGGATATACGAAAGCGCCCGG 
CTGAGCATGCAGGGACTGGGCCTGCCGGCGCTGCTGCAACGCCTCGGCAAGGACGTGCGGAGCAGCCTCTAC 
CTCATCGTTCCCGACACCCTGGCGGCTTGGCAGCCAGGCCTACCAGGGCTGCCCGTGGAGTTGGCCGACGCG 
CTGCGCAACCGCCGTCGCGAGCAGGCGGAGCCGCAGCCGATGGTCCTTCGCCATCCGCTCGCGGAAGGTGAA 
GCGCTCAGCATCGGCATTCCTTCCGACCGGAACTGCCTGCTGATAGCCCTGGGCGAGCGGCTGCCGGACTAC 
AGTCTCCTGCACCACCTGACGGCAGTGCTCGGCATAGAGATCGAACGGCTGCGCGTCGAAAGCGAACGCCAC 
CTGCGCCTGGGTTCGGAATTGCTCGACGACCTGCTGCAACGACGGCTATACCGGGAACAAGCCGAGGAGCGG 
CTGGAGGAACTGCTGCCCGGGCTCGATCTCGACGATGCAGTCGTTTCCGTGGCAAGTTCCGAGGGGCTCGCG 
ACCGACCCTATCGGTCTTTTCCGGGGCCACGACTCACGCCTGCTGGTTCGCGCGCAAGGCCAGGAAATCATT 
CTGCTGCACCAGGCCGGCCTCGCCTCGACACTGCAGGAAGCCCTGGACAGCTCGCTGGGAGTGAGCGCTCCG 
CTCCGTCGTGCCGAACGTTGCGCCGAGGCCTTGCGCGAAGCGCGCCTGGCCCTGGCCCACAGCCATTCCCGG 
CGGCCGTTGTGTCGCTACGCGGAACTGGACGACGAGGCGCCCTGGCTACCCAGAAGCCTCGCCGAGGCTGAG 
CGGGCGTTCCGCCTGGTCCTCGGCGCCCTCCACGACTATGACGCGGCCAATGGCTCCGCACTGCTATACACG 
CTGCAGGTCTTTCTCGAGGAAAACAGGTCCTGGTTGAACGCCGCGCAGCGGCTACACATACACAAGcAGAGC 
CTGGTCTACCGGATACGCCGCATCGAGGAAATCAGCGGTCGCTCGCTGGACAGCACCGCCGATGTGGCGACC 
CTCTGGTTCGCCTTGCAGGCAACCCGGCTGTCGCCGgAaacgAgGGGCAGGACGGCGAAGAGCAGCCTCCTG 
GAGCAGTCCGCGCACCATGGCGGCGACATGGACTGA