ViewGene

Locus Name:
GeneID:
Location:

GeneID:753
TrivialName: PA14_06650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06650
PAO1 Ortholog Locus:PA0509
Sequence Length:1482
Protein Length:493
Start: 582569
Stop: 581088
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03898.1|AE004488_2 (AE004488) probable c-type cytochrome [Pseudomonas aeruginosa PAO1]
Identities = 492/493 (99%), Positives = 493/493 (100%)
Sequence:
ATGCGCCTGATCGGCCTCGCCCTCGGCCTGCTCCTCGGCGCCCTCGCACAGGCCGGCGAAGCGCCGGGGGAA
GCGCTCTACCGCCAGCACTGCCAGGCCTGCCACGGCGCCGGGCGGCTCGGCGGCAGCGGCCCGACCCTGCTC
CCGGAAAGCCTTTCGCGGCTGAAGCCGGCGCAGGCCCGCGAGGTGATCCTGCACGGACGCCCGGCAACCCAG
ATGGCCGGCTTTGCCGGTCAATTGGACGACGCCGCGGCGGACGCCCTGGTCGCCTATCTCTACCAGGCGCCG
CCGCGCGAACCGCAGTGGAGCGCCGAGAACATCCGGGCCAGCCAGGTTCAGCCGCATCCCCTCGCCACCCTG
CCGTCCAGGCCGCGCTTCGAGGCCGACCCACTGAACCTGTTCGTGGTTGTGGAATCCGGCGACCACCACGTG
ACCATCCTCGACGGCGATCGCTTCGAGCCCATCGCCCGCTTCCCATCGCGCTACGCCCTGCACGGTGGTCCG
AAGTTCTCCCCGGACGGGCGCCTGGTGTACTTCGCCTCGCGCGACGGCTGGGTGACCCTCTACGACCTGTAC
AACCTGAAGGTGGTCGCCGAGGTCCGCGCCGGCCTCAACACGCGCAACCTGGCGGTCAGCGACGACGGGCGC
TGGGTCCTGGTGGGCAACTACCTGCCCGGCAACCTGGTGCTGCTGGACGCCCGCGACCTGTCCCTGGTGCAG
GTCATCCCGGCGGCCGACGCCCAGGGCCAGGCCTCGCGGGTCAGCGCGGTATACACGGCACCGCCGCGGCAC
AGCTTCGTGGTCGCCCTGAAGGACGTCCACGAGCTGTGGGAGCTGCCCTATGCCAACGGCAAGCCGGTCGCG
CCGAAACGGTTGGCGGTGGCCGACTACCTCGACGACTTCTCCTTCAGCCCCGACTACCGCTACCTGCTGGGC
AGCTCGCGGCAGGCCAGGGGCGGCGAGGTGATCGAGCTGGACAGCGGCGCGCGGGTCGCCTCGATCCCGCTG
TCGGGCATGCCGCACCTCGGCTCGGGCATCTACTGGAAGCGCGACGGGCGCTGGGTGTTCGCCACGCCGAAC
ATCAGCCGCGGGGTGATCTCGGTGATCGACCTGCAAAACTGGAAGCCGTTGAAGGAAATCGTCACCGACGGC
CCCGGCTTCTTCATGCGCAGCCATGCCGACTCGCCCTACGCCTGGACCGATACCTTCCTTGGCAAGAAACAC
GACGAGATCCTGCTGATCGACAAGCAGACCCTGGAAATCGCCCATCGCCTGCGCCCCAGCCCGGGCAAGGTG
GCCGGCCACGTCGAGTTCACCCGCGACGGCCGCTACGCCCTGCTCAGCGTCTGGGACCGCGACGGCGCGCTG
GTGGTCTACGACGCGCACAGCCTGGAGGAAGTGAAGCGACTGCCGATGAACAAGCCGTCGGGCAAGTACAAC
GTCGGCAACAAGATCGGCTATGCGGAGGGAACCTCGCACTGA
Translation:
MRLIGLALGLLLGALAQAGEAPGEALYRQHCQACHGAGRLGGSGPTLLPESLSRLKPAQAREVILHGRPATQ
MAGFAGQLDDAAADALVAYLYQAPPREPQWSAENIRASQVQPHPLATLPSRPRFEADPLNLFVVVESGDHHV
TILDGDRFEPIARFPSRYALHGGPKFSPDGRLVYFASRDGWVTLYDLYNLKVVAEVRAGLNTRNLAVSDDGR
WVLVGNYLPGNLVLLDARDLSLVQVIPAADAQGQASRVSAVYTAPPRHSFVVALKDVHELWELPYANGKPVA
PKRLAVADYLDDFSFSPDYRYLLGSSRQARGGEVIELDSGARVASIPLSGMPHLGSGIYWKRDGRWVFATPN
ISRGVISVIDLQNWKPLKEIVTDGPGFFMRSHADSPYAWTDTFLGKKHDEILLIDKQTLEIAHRLRPSPGKV
AGHVEFTRDGRYALLSVWDRDGALVVYDAHSLEEVKRLPMNKPSGKYNVGNKIGYAEGTSH*
AnnotationID:762GeneID:753
AnnotatorUID: danlee
Modification Date/Time: 2006-01-27 16:04:47
Gene Name:nirN
Confidence Code:3
GeneProduct:putative c-type cytochrome
Cell Localization:(1) Cytoplasmic
Synonyms:
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02239
Secondary Functional Category(ies):biosynthesis of cofactors, prosthetic groups and carriers
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
pfam02239, Cytochrom_D1, Cytochrome D1 heme domain.
CD-Length = 369 residues, 100.0% aligned
Score =  509 bits (1311), Expect = 4e-145
Identities = 170/369 (46%), Positives = 212/369 (57%), Gaps = 11/369 (2%)
Genomic Context:
Comment:
ReferenceID:1509
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18651
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33817
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:753_cdd.html
URL:
ReferenceID:35311
Author/Investigator(s): Kawasaki S, Arai H, Kodama T, Igarashi Y.
Title: Gene cluster for dissimilatory nitrite reductase (nir) from Pseudomonas aeruginosa: sequencing and identification of a locus for heme d1 biosynthesis.
PubMed: 8982003
MedLine:
Source:
J Bacteriol. 1997 Jan;179(1):235-42.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8982003
ReferenceID:35312
Author/Investigator(s): Hasegawa N, Arai H, Igarashi Y.
Title: Two c-type cytochromes, NirM and NirC, encoded in the nir gene cluster of Pseudomonas aeruginosa act as electron donors for nitrite reductase.
PubMed: 11700043
MedLine:
Source:
Biochem Biophys Res Commun. 2001 Nov 16;288(5):1223-30.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11700043
Homologs By Global Alignment
Gene ID:753

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1326 PA0509_tr translation of PA0509 493 99.79 99.99 0 2585.0
49613 gb|AAG03898.1|AE004488_2 (AE004488) probable c-type cytochrome [Pseudomonas aeruginosa PAO1] 493 99.79 99.99 0 2585.0
49614 dbj|BAA12683.1| (D84475) NirN [Pseudomonas aeruginosa] 493 99.59 99.79 0 2578.0
49615 emb|CAA98153.1| (Z73914) ORF507 protein [Pseudomonas stutzeri] 507 67.65 78.10 14 1794.0
49616 dbj|BAA90262.1| (AB030281) NirN [Rubrivivax gelatinosus] 494 14.17 16.39 387 352.0
GC ORFID: 43755How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0509Glimmer Score:
Start: 6383911Stop: 6382430
Length: 1482
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0509 translation of PA0509Homolog Bit Score 1000.0
Other Homologs: t_PA0509 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCCTGATCGGCCTCGCCCTCGGCCTGCTCCTCGGCGCCCTCGCACAGGCCGGCGAAGCGCCGGGGGAA
GCGCTCTACCGCCAGCACTGCCAGGCCTGCCACGGCGCCGGGCGGCTCGGCGGCAGCGGCCCGACCCTGCTC
CCGGAAAGCCTTTCGCGGCTGAAGCCGGCGCAGGCCCGCGAGGTGATCCTGCACGGACGCCCGGCAACCCAG
ATGGCCGGCTTTGCCGGTCAATTGGACGACGCCGCGGCGGACGCCCTGGTCGCCTATCTCTACCAGGCGCCG
CCGCGCGAACCGCAGTGGAGCGCCGAGAACATCCGGGCCAGCCAGGTTCAGCCGCATCCCCTCGCCACCCTG
CCGTCCAGGCCGCGCTTCGAGGCCGACCCACTGAACCTGTTCGTGGTTGTGGAATCCGGCGACCACCACGTG
ACCATCCTCGACGGCGATCGCTTCGAGCCCATCGCCCGCTTCCCATCGCGCTACGCCCTGCACGGTGGTCCG
AAGTTCTCCCCGGACGGGCGCCTGGTGTACTTCGCCTCGCGCGACGGCTGGGTGACCCTCTACGACCTGTAC
AACCTGAAGGTGGTCGCCGAGGTCCGCGCCGGCCTCAACACGCGCAACCTGGCGGTCAGCGACGACGGGCGC
TGGGTCCTGGTGGGCAACTACCTGCCCGGCAACCTGGTGCTGCTGGACGCCCGCGACCTGTCCCTGGTGCAG
GTCATCCCGGCGGCCGACGCCCAGGGCCAGGCCTCGCGGGTCAGCGCGGTATACACGGCACCGCCGCGGCAC
AGCTTCGTGGTCGCCCTGAAGGACGTCCACGAGCTGTGGGAGCTGCCCTATGCCAACGGCAAGCCGGTCGCG
CCGAAACGGTTGGCGGTGGCCGACTACCTCGACGACTTCTCCTTCAGCCCCGACTACCGCTACCTGCTGGGC
AGCTCGCGGCAGGCCAGGGGCGGCGAGGTGATCGAGCTGGACAGCGGCGCGCGGGTCGCCTCGATCCCGCTG
TCGGGCATGCCGCACCTCGGCTCGGGCATCTACTGGAAGCGCGACGGGCGCTGGGTGTTCGCCACGCCGAAC
ATCAGCCGCGGGGTGATCTCGGTGATCGACCTGCAAAACTGGAAGCCGTTGAAGGAAATCGTCACCGACGGC
CCCGGCTTCTTCATGCGCAGCCATGCCGACTCGCCCTACGCCTGGACCGATACCTTCCTTGGCAAGAAACAC
GACGAGATCCTGCTGATCGACAAGCAGACCCTGGAAATCGCCCATCGCCTGCGCCCCAGCCCGGGCAAGGTG
GCCGGCCACGTCGAGTTCACCCGCGACGGCCGCTACGCCCTGCTCAGCGTCTGGGACCGCGACGGCGCGCTG
GTGGTCTACGACGCGCACAGCCTGGAGGAAGTGAAGCGACTGCCGATGAACAAGCCGTCGGGCAAGTACAAC
GTCGGCAACAAGATCGGCTATGCGGAGGGAACCTCGCACTGA