ViewGene
Locus Name:
GeneID:
Location:

GeneID:750
TrivialName: PA14_46100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46100
PAO1 Ortholog Locus:PA1419
Sequence Length:1512
Protein Length:503
Start: 4098409
Stop: 4099920
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04808.1|AE004571_7 (AE004571) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 502/503 (99%), Positives = 502/503 (99%)
Sequence:
ATGGATAACAACAATAACCAACACGCAATCACACGCATCGAAACCTTCGGGGTCGAACAGATTCCCGACCAC
GAACGCAACGCCACGCCGGTCGATCTGTTCCGCATGATCTTCGGCGGCGCCAATACCTTCGCCACCGCCGTG
CTCGGCAGCTTTCCGGTGCTCTTCGGGCTGTCCTTCCAGGCCGGACTGTGGGCGATCCTGCTGGGCGTCACG
CTGGGCGCGCTGATCCTCGCCCCGATGGGCCTGTTCGGCCCGCTCAACGGCACCAACAACGCGGTCTCCTCC
GGCGCGCACTTCGGCGTGCACGGGCGCATCGTCGGCTCCTTCCTCTCGCTGCTGACCGCCATCGCCTTCTTC
TCGCTCTCGGTGTGGAGTTCCGGCGACGCCCTGGTCGGCGGCGCCCGGCGCCTGGTCGGCCTGGAAGAGAGC
GAACGGAACCTGGGCCTGGCCTACGGCCTGTTCGCCGTGCTGGTGCTGACCGTATGCATCTACGGCTTCCGC
TTCATGCTGCTGGTCAACAGGATCGCCGTGTGGGCCGCCAGCCTGCTGTTCCTGCTCGGCCTGTTCGCCTTC
GCCGGCCCCTTCGACGCCGCCTACGCCGGCAGCGTGCAGCTCGGCCAGCCGGGCTTCTGGGCCGCCTTCATC
GGCGCCACCCTGCTGGCCATGAGCAACCCGATCTCCTTCGGCGCCTTCCTGGGCGACTGGGCCCGCTACATC
CCACGCCAGACCTCGCAGGCACGGATCATGCTGGCGGTGATCGGCGCGCAACTGGCGACCCTGGTTCCCTTC
CTGTTCGGCCTCGCCACCGCGACCATCGTCGCCGTCCGCGCGCCGGACTACATCGCCGCCAACAACTACGTC
GGCGGCCTGCTGGCCATCGCTCCCGGCTGGTTCTTCCTGCCGGTATGCCTGATCGCGGTGATCGGCGGCATG
TCCACCGGCACCACTTCGCTGTACGGCACCGGGCTGGACATGTCCAGCGTGTTCCCGCGCCTGCTCTCGCGG
GTGCAGGCCACGGTGCTGATCGGGGTCGCCTCGATCGGCTTCATCTTCGTCGGCCGCTTCGCCTTCAACCTG
GTGCAGAGCGTCTCCACCTTCGCCGTGCTGATCGTCACCTGCACCACCCCGTGGATGGTGATCATGCTGATC
GGCCTGCTGACCCGTCGCGGCTTCTACCGCCCGGACGACCTGCAGGTGTTCACCCGCGGCCAGCGCGGCGGC
GCCTACTGGTTCGAGCACGGCTGGAACTGGCGCGGAATGGGCGCCTGGATTCCCAGCGCGGCAGCCGGCCTG
GCCTTCGTCAACCTGCCGGGGCAATTCGTCGGTCCGCTCGGCGAACTGGCCGGCGGCATCGACCTCAGCCTG
CCGGTCGCCCTCGGCCTGGCCGCCCTGCTCTACCTGGCACTGCTGCGCCTGTTCCCGGAACCGCCTTGCGTC
TACGGCCCGCGAGGACCGCGCTGGGTACGCGCGCACGGCACGCGGAGGGCCCCTGCGATAGCCACCGCCTGA
Translation:
MDNNNNQHAITRIETFGVEQIPDHERNATPVDLFRMIFGGANTFATAVLGSFPVLFGLSFQAGLWAILLGVT
LGALILAPMGLFGPLNGTNNAVSSGAHFGVHGRIVGSFLSLLTAIAFFSLSVWSSGDALVGGARRLVGLEES
ERNLGLAYGLFAVLVLTVCIYGFRFMLLVNRIAVWAASLLFLLGLFAFAGPFDAAYAGSVQLGQPGFWAAFI
GATLLAMSNPISFGAFLGDWARYIPRQTSQARIMLAVIGAQLATLVPFLFGLATATIVAVRAPDYIAANNYV
GGLLAIAPGWFFLPVCLIAVIGGMSTGTTSLYGTGLDMSSVFPRLLSRVQATVLIGVASIGFIFVGRFAFNL
VQSVSTFAVLIVTCTTPWMVIMLIGLLTRRGFYRPDDLQVFTRGQRGGAYWFEHGWNWRGMGAWIPSAAAGL
AFVNLPGQFVGPLGELAGGIDLSLPVALGLAALLYLALLRLFPEPPCVYGPRGPRWVRAHGTRRAPAIATA*
AnnotationID:759GeneID:750
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 07:07:58
Gene Name:
Confidence Code:3
GeneProduct:putative transporter
Cell Localization:()
Synonyms:PA1419
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative nucleoside transporter
Functional Category Confidence Code:5
COGs:COG1457
Secondary Functional Category(ies):nucleotide biosynthesis and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66334.1|AE016262_2 (AE016776) transporter, NCS1 nucleoside transporter family
           [Pseudomonas putida KT2440]
          Length = 499

 Score =  831 bits (2146), Expect = 0.0
 Identities = 406/488 (83%), Positives = 442/488 (90%)

>dbj|BAC68501.1| (AP005024) putative transporter [Streptomyces avermitilis MA-4680]
          Length = 511

 Score =  685 bits (1767), Expect = 0.0
 Identities = 339/486 (69%), Positives = 391/486 (80%), Gaps = 4/486 (0%)








 
Structural Features:
COG1457, CodB, Purine-cytosine permease and related proteins 
[Nucleotide transport and metabolism]
CD-Length = 442 residues, 100.0% aligned
Score =  249 bits (638), Expect = 5e-67
Identities = 140/478 (29%), Positives = 199/478 (41%), Gaps = 39/478 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1503




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18645




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37420




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:750_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:750
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1322
                           PA1419_tr
                           translation of PA1419
                           503
                           99.80
                           99.80
                           0
                           2588.0
     

     
     
49473
                           gb|AAG04808.1|AE004571_7
                           (AE004571) probable transporter [Pseudomonas aeruginosa PAO1]
                           503
                           99.80
                           99.80
                           0
                           2588.0
     

     
     
49474
                           gb|AAN66334.1|AE016262_2
                           (AE016776) transporter, NCS1 nucleoside transporter family [Pseudomonas putida KT2440]
                           506
                           80.83
                           88.33
                           10
                           2145.0
     

     
     
49475
                           dbj|BAC68501.1|
                           (AP005024) putative transporter [Streptomyces avermitilis MA-4680]
                           517
                           65.76
                           75.82
                           20
                           1764.0
     

     






      

          
GC ORFID: 43752How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1419Glimmer Score: 

          
Start: 855500Stop: 853989

          
Length: 1512


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1419 translation of PA1419Homolog Bit Score 1001.0

          
Other Homologs:  t_PA1419 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATAACAACAATAACCAACACGCAATCACACGCATCGAAACCTTCGGGGTCGAACAGATTCCCGACCAC 
GAACGCAACGCCACGCCGGTCGATCTGTTCCGCATGATCTTCGGCGGCGCCAATACCTTCGCCACCGCCGTG 
CTCGGCAGCTTTCCGGTGCTCTTCGGGCTGTCCTTCCAGGCCGGACTGTGGGCGATCCTGCTGGGCGTCACG 
CTGGGCGCGCTGATCCTCGCCCCGATGGGCCTGTTCGGCCCGCTCAACGGCACCAACAACGCGGTCTCCTCC 
GGCGCGCACTTCGGCGTGCACGGGCGCATCGTCGGCTCCTTCCTCTCGCTGCTGACCGCCATCGCCTTCTTC 
TCGCTCTCGGTGTGGAGTTCCGGCGACGCCCTGGTCGGCGGCGCCCGGCGCCTGGTCGGCCTGGAAGAGAGC 
GAACGGAACCTGGGCCTGGCCTACGGCCTGTTCGCCGTGCTGGTGCTGACCGTATGCATCTACGGCTTCCGC 
TTCATGCTGCTGGTCAACAGGATCGCCGTGTGGGCCGCCAGCCTGCTGTTCCTGCTCGGCCTGTTCGCCTTC 
GCCGGCCCCTTCGACGCCGCCTACGCCGGCAGCGTGCAGCTCGGCCAGCCGGGCTTCTGGGCCGCCTTCATC 
GGCGCCACCCTGCTGGCCATGAGCAACCCGATCTCCTTCGGCGCCTTCCTGGGCGACTGGGCCCGCTACATC 
CCACGCCAGACCTCGCAGGCACGGATCATGCTGGCGGTGATCGGCGCGCAACTGGCGACCCTGGTTCCCTTC 
CTGTTCGGCCTCGCCACCGCGACCATCGTCGCCGTCCGCGCGCCGGACTACATCGCCGCCAACAACTACGTC 
GGCGGCCTGCTGGCCATCGCTCCCGGCTGGTTCTTCCTGCCGGTATGCCTGATCGCGGTGATCGGCGGCATG 
TCCACCGGCACCACTTCGCTGTACGGCACCGGGCTGGACATGTCCAGCGTGTTCCCGCGCCTGCTCTCGCGG 
GTGCAGGCCACGGTGCTGATCGGGGTCGCCTCGATCGGCTTCATCTTCGTCGGCCGCTTCGCCTTCAACCTG 
GTGCAGAGCGTCTCCACCTTCGCCGTGCTGATCGTCACCTGCACCACCCCGTGGATGGTGATCATGCTGATC 
GGCCTGCTGACCCGTCGCGGCTTCTACCGCCCGGACGACCTGCAGGTGTTCACCCGCGGCCAGCGCGGCGGC 
GCCTACTGGTTCGAGCACGGCTGGAACTGGCGCGGAATGGGCGCCTGGATTCCCAGCGCGGCAGCCGGCCTG 
GCCTTCGTCAACCTGCCGGGGCAATTCGTCGGTCCGCTCGGCGAACTGGCCGGCGGCATCGACCTCAGCCTG 
CCGGTCGCCCTCGGCCTGGCCGCCCTGCTCTACCTGGCACTGCTGCGCCTGTTCCCGGAACCGCCTTGCGTC 
TACGGCCCGCGAGGACCGCGCTGGGTACGCGCGCACGGCACGCGGAGGGCCCCTGCGATAGCCACCGCCTGA