ViewGene

Locus Name:
GeneID:
Location:

GeneID:75
TrivialName: PA14_11100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11100
PAO1 Ortholog Locus:PA4082
Sequence Length:3057
Protein Length:1018
Start: 961839
Stop: 964895
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07469.1|AE004824_4 (AE004824) adhesive protein CupB5 [Pseudomonas aeruginosa PAO1]
Identities = 1002/1018 (98%), Positives = 1006/1018 (98%)
Sequence:
ATGAACAAATGCTATGCACTGGTCTGGAACGTATCCCAGGGCTGCTGGAACGTCGTCAGCGAAGGCAGTCGC
AGGCGCGGCAAGCCCGCCGGCGCCAAGGCGGCGATCGCCTCCGCCCTGGCCCTGCTGGGCGCCACGGCCCTG
GCTCCGGCCTATGCGCTGCCAAGCGGGGGAACGGTGGTCGGCGGGAGCGCGAACGGGGAGATACACCTGTCG
GGCGGCAACAGCCTGTCGGTCAACCAGAAGGTCGACAAGCTGATCGCCAACTGGGACTCCTTCAGCGTTGCC
GCCGGCGAGCGGGTGATCTTCAACCAGCCGAGCAGTAGCTCGATTGCCCTGAATCGGGTGATCGGCACCAAG
GCCAGCGATATCCAGGGCCGGATCGATGCCAACGGCCAGGTCTTCCTGGTCAACCCCAACGGCGTGCTCTTC
GGTCGCGGCGCCCAGGTCAATGTCGGCGGCCTGGTGGCTTCCACGCTGGACATCACGGATGCCGAGTTCAAC
GGCAACTCCTCCAGATACCGTTTCACGGGTCCCTCTACCAACGGTGTCCTCAACCACGGGGGCGCCATCACC
GCGGCGGAAGGCGGCAGCATCGCCCTGCTGGGCGCGCAGGTCGACAACCGCGGGACGGTCCTGGCGCAGATG
GGCGGTGTCGGGCTCGGCGCGGGCAGCGACCTGACGCTGAATTTCGACGGCAACAAGCTGCTCGACATCCGC
GTCGACGCCGGGGTCGCCAATGCGCTGGCAAGCAACGGCGGCCTGCTCAAGGCCGACGGGGGGCGAGTCCTG
ATGGCGGCCAGGACCGCCAATGCGCTGCTCAACACGGTGGTGAACTCCCAGGGTGCCATCGAGGCCCGTTCG
CTGCGCGGCAAGAACGGGCGGATCGTGCTCGATGGCGGCCCGGACGGCAAGGTCATGGTGGGAGGCGCCTTG
TCCGCCAATGCGCTGAAAGGTCCGGGGCACGGCGGCACGGTCGAGGTCCGGGGGCAGGCGGTGGAAGTGGCC
CTGGGCACCCAGGTGAACACGCTCGCCAGCAATGGCCTCAACGGCACCTGGAAGATTGCCGCCGACAAGATC
GACGTGCGCCCGTCGGCGGTGTCGGATGGCGTCACCGTTCATGCCGACACCCTGTCGCGGAACCTGGCGAGC
ACCAATATCGAACTGGTTTCGACCAAGGGCGACCTGGACCTCGACGGCTCGGTGAGCTGGGCATCGGGCAAC
CGGCTGGGGCTGGGCTCCGCGGCCGACCTGACGCTGAATGGCAGGCTGAATGCCAGTGGCGCCAAGGCTGGG
CTGGAGCTGAAGGCCGAAGGCGCTATCGATATCAATGACAAGATCGTTCTCGGCGGGGCTGGCAGCGCGCTG
GCCATGGATGCCGGCGAAGGCCACCGGGTGAACGGCACGGCGTCGGTCTCCCTGGCCGGGGCCAACGCGACC
TACGTCTCCGGCGGCTATTACTACACGGTGGTGCAGAACCTGGCGCAGTTGCAGGCGATCAACAAGAACCTA
GACGGCCTGTACGTGCTCGGCGGCAATATCCTGGGCGGCAGCTATTACTGCACGGCACTGCAGTCCATCGGC
GGGCCCGCCGGCGTCTTCAGCGGCACCCTGGACGGTCTCGGCAACAGCATCGGCAATCTCTCGATCAGCAAC
ACCGGGCCGAATGTCGGGCTGTTCGCCCGCTCCTCGGGCACCCTGAGCAACCTGAAACTGAACAACCTGCGG
GTATCCGATAACACCTACGGCTCCGGTCCGTCTTCGCTCGGCGCCCTGGTCGGGATCAACAGCGGGCGTATC
GCCAACGTCAGCGCCAGCGGGGTCTCGGTCGTCGGCAGCCGACTGCGCTCCAACGCACTGGGCGGCCTGGTC
GGGCGCAATATCAACGGGCAGATCACGAACGCATCCGTCAGCGGCGGCGTCACCGCTTATGCGGCGAGCACA
GCGGTCGGCGGTCTGGTGGGGGAGAACTTCACCACCGCCTGGGGGCCGGAGGCGGTCATCGAGAACGCCCAC
AGCAACGTCCATGTGGCTGCACAGTCCACCGAGCGCAACAGCCTGGGCGGCGTCGGCGGCCTGGTCGGACTG
AATGCGAAGGCCACGATCAGGGCGTCCGGCAGCCAGGGGAAGGTCGAGACCTACCGGCCCGGCCTGAACGTC
GGCGGCCTGGTCGGCTACAACATGTTCGGCCACGTCTCCGATAGTAGCGCCAGCGGCCAGGTGGAGGCCGGC
GGCGCGGGGTATACCGGCGGGCTGGTCGGCCTGAGTTCCGGCGGCGAGATATTCCGCTCGCAGGCGAGCGGG
TCGGTGTACAGCAAGGGCGGCCTGGCGACCGGAGGGTTGATCGGCAAGGCAGAAGGCAACGGCATGCTCGGA
AACCTGAAAGCCAGCGGCAGCGTCATGGACCAGGGGGGCGCGGATCTGGGCGGGCTGGTCGGCAACAACAGC
CAGGGTGCCATCGAGACCGCCGAGGCGACGGGCAAGGTCAGCGGCGGCAGCAACAGTCGCGTCGGCGGTCTG
ATTGGACACAACCTCGGCGGTTCCGTCGCCCATGCGATCTCGCGCGGCGACGTGAGCGGCGGCTTCAACAGC
CTGGTGGGCGGGCTCGTCGGCCACAACGGCGGCGAACTGTTCAACGTGGATGCCAGCGGCAGGGTCAGCGCC
GCTGCGAGTGCGTCGGTTGGCGGCCTGGTCGGCAGCAACGCCGGTTCGATCCTGTCGGCGCGCAGCAGCAGT
ACCGTTAGCGGCGGCGGGCGCAGCCGCATCGGCGGCCTGGTCGGCGAGAACCAGATCCAGGGACGCATCGTT
TCGTCCATGTCGGAAGGCACCGTCAGTGGCGACTACTACGTCTCCATGGGCGGGCTGGCCGGCGTCAACCTG
GGATCGATCGAGTACTCCGGCGTCAGCGGCAAGATCGACTTCAAGCCTCAGTCCCATTACGGCCAGATCTAC
GGTGCGCAGGTCGGCGAGAACCGTGGGGTCCTGGGCGGCAACTACGTGATCGGCGAGGCGGCGCTCCTGCCG
CCTGCCGGTATCGACTACGGCAACATCTGGTAA
Translation:
MNKCYALVWNVSQGCWNVVSEGSRRRGKPAGAKAAIASALALLGATALAPAYALPSGGTVVGGSANGEIHLS
GGNSLSVNQKVDKLIANWDSFSVAAGERVIFNQPSSSSIALNRVIGTKASDIQGRIDANGQVFLVNPNGVLF
GRGAQVNVGGLVASTLDITDAEFNGNSSRYRFTGPSTNGVLNHGGAITAAEGGSIALLGAQVDNRGTVLAQM
GGVGLGAGSDLTLNFDGNKLLDIRVDAGVANALASNGGLLKADGGRVLMAARTANALLNTVVNSQGAIEARS
LRGKNGRIVLDGGPDGKVMVGGALSANALKGPGHGGTVEVRGQAVEVALGTQVNTLASNGLNGTWKIAADKI
DVRPSAVSDGVTVHADTLSRNLASTNIELVSTKGDLDLDGSVSWASGNRLGLGSAADLTLNGRLNASGAKAG
LELKAEGAIDINDKIVLGGAGSALAMDAGEGHRVNGTASVSLAGANATYVSGGYYYTVVQNLAQLQAINKNL
DGLYVLGGNILGGSYYCTALQSIGGPAGVFSGTLDGLGNSIGNLSISNTGPNVGLFARSSGTLSNLKLNNLR
VSDNTYGSGPSSLGALVGINSGRIANVSASGVSVVGSRLRSNALGGLVGRNINGQITNASVSGGVTAYAAST
AVGGLVGENFTTAWGPEAVIENAHSNVHVAAQSTERNSLGGVGGLVGLNAKATIRASGSQGKVETYRPGLNV
GGLVGYNMFGHVSDSSASGQVEAGGAGYTGGLVGLSSGGEIFRSQASGSVYSKGGLATGGLIGKAEGNGMLG
NLKASGSVMDQGGADLGGLVGNNSQGAIETAEATGKVSGGSNSRVGGLIGHNLGGSVAHAISRGDVSGGFNS
LVGGLVGHNGGELFNVDASGRVSAAASASVGGLVGSNAGSILSARSSSTVSGGGRSRIGGLVGENQIQGRIV
SSMSEGTVSGDYYVSMGGLAGVNLGSIEYSGVSGKIDFKPQSHYGQIYGAQVGENRGVLGGNYVIGEAALLP
PAGIDYGNIW*
AnnotationID:85GeneID:75
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 07:07:30
Gene Name:cupB5
Confidence Code:2
GeneProduct:adhesive protein CupB5
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam05860
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
pfam05860, Haemagg_act, haemagglutination activity domain.
CD-Length = 121 residues, 100.0% aligned
Score = 84.5 bits (209), Expect = 5e-17
Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Genomic Context:
Comment:
ReferenceID:153
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17295
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36829
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:75_cdd.html
URL:
ReferenceID:36936
Author/Investigator(s): Vallet I, Olson JW, Lory S, Lazdunski A, Filloux A.
Title: The chaperone/usher pathways of Pseudomonas aeruginosa: identification of fimbrial gene clusters (cup) and their involvement in biofilm formation.
PubMed: 11381121
MedLine:
Source:
Proc Natl Acad Sci U S A. 2001 Jun 5;98(12):6911-6. Epub 2001 May 29.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=11381121
Homologs By Global Alignment
Gene ID:75

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
151 PA4082_tr translation of PA4082 1018 98.42 98.82 0 5036.0
13503 gb|AAG07469.1|AE004824_4 (AE004824) adhesive protein CupB5 [Pseudomonas aeruginosa PAO1] 1018 98.42 98.82 0 5036.0
GC ORFID: 43077How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4082Glimmer Score:
Start: 3992098Stop: 3989042
Length: 3057
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA4082 translation of PA4082Homolog Bit Score 1944.0
Other Homologs: t_PA4082 (ORF: GLIMMER)
GC ORF Sequence
ATGAACAAATGCTATGCACTGGTCTGGAACGTATCCCAGGGCTGCTGGAACGTCGTCAGCGAAGGCAGTCGC
AGGCGCGGCAAGCCCGCCGGCGCCAAGGCGGCGATCGCCTCCGCCCTGGCCCTGCTGGGCGCCACGGCCCTG
GCTCCGGCCTATGCGCTGCCAAGCGGGGGAACGGTGGTCGGCGGGAGCGCGAACGGGGAGATACACCTGTCG
GGCGGCAACAGCCTGTCGGTCAACCAGAAGGTCGACAAGCTGATCGCCAACTGGGACTCCTTCAGCGTTGCC
GCCGGCGAGCGGGTGATCTTCAACCAGCCGAGCAGTAGCTCGATTGCCCTGAATCGGGTGATCGGCACCAAG
GCCAGCGATATCCAGGGCCGGATCGATGCCAACGGCCAGGTCTTCCTGGTCAACCCCAACGGCGTGCTCTTC
GGTCGCGGCGCCCAGGTCAATGTCGGCGGCCTGGTGGCTTCCACGCTGGACATCACGGATGCCGAGTTCAAC
GGCAACTCCTCCAGATACCGTTTCACGGGTCCCTCTACCAACGGTGTCCTCAACCACGGGGGCGCCATCACC
GCGGCGGAAGGCGGCAGCATCGCCCTGCTGGGCGCGCAGGTCGACAACCGCGGGACGGTCCTGGCGCAGATG
GGCGGTGTCGGGCTCGGCGCGGGCAGCGACCTGACGCTGAATTTCGACGGCAACAAGCTGCTCGACATCCGC
GTCGACGCCGGGGTCGCCAATGCGCTGGCAAGCAACGGCGGCCTGCTCAAGGCCGACGGGGGGCGAGTCCTG
ATGGCGGCCAGGACCGCCAATGCGCTGCTCAACACGGTGGTGAACTCCCAGGGTGCCATCGAGGCCCGTTCG
CTGCGCGGCAAGAACGGGCGGATCGTGCTCGATGGCGGCCCGGACGGCAAGGTCATGGTGGGAGGCGCCTTG
TCCGCCAATGCGCTGAAAGGTCCGGGGCACGGCGGCACGGTCGAGGTCCGGGGGCAGGCGGTGGAAGTGGCC
CTGGGCACCCAGGTGAACACGCTCGCCAGCAATGGCCTCAACGGCACCTGGAAGATTGCCGCCGACAAGATC
GACGTGCGCCCGTCGGCGGTGTCGGATGGCGTCACCGTTCATGCCGACACCCTGTCGCGGAACCTGGCGAGC
ACCAATATCGAACTGGTTTCGACCAAGGGCGACCTGGACCTCGACGGCTCGGTGAGCTGGGCATCGGGCAAC
CGGCTGGGGCTGGGCTCCGCGGCCGACCTGACGCTGAATGGCAGGCTGAATGCCAGTGGCGCCAAGGCTGGG
CTGGAGCTGAAGGCCGAAGGCGCTATCGATATCAATGACAAGATCGTTCTCGGCGGGGCTGGCAGCGCGCTG
GCCATGGATGCCGGCGAAGGCCACCGGGTGAACGGCACGGCGTCGGTCTCCCTGGCCGGGGCCAACGCGACC
TACGTCTCCGGCGGCTATTACTACACGGTGGTGCAGAACCTGGCGCAGTTGCAGGCGATCAACAAGAACCTA
GACGGCCTGTACGTGCTCGGCGGCAATATCCTGGGCGGCAGCTATTACTGCACGGCACTGCAGTCCATCGGC
GGGCCCGCCGGCGTCTTCAGCGGCACCCTGGACGGTCTCGGCAACAGCATCGGCAATCTCTCGATCAGCAAC
ACCGGGCCGAATGTCGGGCTGTTCGCCCGCTCCTCGGGCACCCTGAGCAACCTGAAACTGAACAACCTGCGG
GTATCCGATAACACCTACGGCTCCGGTCCGTCTTCGCTCGGCGCCCTGGTCGGGATCAACAGCGGGCGTATC
GCCAACGTCAGCGCCAGCGGGGTCTCGGTCGTCGGCAGCCGACTGCGCTCCAACGCACTGGGCGGCCTGGTC
GGGCGCAATATCAACGGGCAGATCACGAACGCATCCGTCAGCGGCGGCGTCACCGCTTATGCGGCGAGCACA
GCGGTCGGCGGTCTGGTGGGGGAGAACTTCACCACCGCCTGGGGGCCGGAGGCGGTCATCGAGAACGCCCAC
AGCAACGTCCATGTGGCTGCACAGTCCACCGAGCGCAACAGCCTGGGCGGCGTCGGCGGCCTGGTCGGACTG
AATGCGAAGGCCACGATCAGGGCGTCCGGCAGCCAGGGGAAGGTCGAGACCTACCGGCCCGGCCTGAACGTC
GGCGGCCTGGTCGGCTACAACATGTTCGGCCACGTCTCCGATAGTAGCGCCAGCGGCCAGGTGGAGGCCGGC
GGCGCGGGGTATACCGGCGGGCTGGTCGGCCTGAGTTCCGGCGGCGAGATATTCCGCTCGCAGGCGAGCGGG
TCGGTGTACAGCAAGGGCGGCCTGGCGACCGGAGGGTTGATCGGCAAGGCAGAAGGCAACGGCATGCTCGGA
AACCTGAAAGCCAGCGGCAGCGTCATGGACCAGGGGGGCGCGGATCTGGGCGGGCTGGTCGGCAACAACAGC
CAGGGTGCCATCGAGACCGCCGAGGCGACGGGCAAGGTCAGCGGCGGCAGCAACAGTCGCGTCGGCGGTCTG
ATTGGACACAACCTCGGCGGTTCCGTCGCCCATGCGATCTCGCGCGGCGACGTGAGCGGCGGCTTCAACAGC
CTGGTGGGCGGGCTCGTCGGCCACAACGGCGGCGAACTGTTCAACGTGGATGCCAGCGGCAGGGTCAGCGCC
GCTGCGAGTGCGTCGGTTGGCGGCCTGGTCGGCAGCAACGCCGGTTCGATCCTGTCGGCGCGCAGCAGCAGT
ACCGTTAGCGGCGGCGGGCGCAGCCGCATCGGCGGCCTGGTCGGCGAGAACCAGATCCAGGGACGCATCGTT
TCGTCCATGTCGGAAGGCACCGTCAGTGGCGACTACTACGTCTCCATGGGCGGGCTGGCCGGCGTCAACCTG
GGATCGATCGAGTACTCCGGCGTCAGCGGCAAGATCGACTTCAAGCCTCAGTCCCATTACGGCCAGATCTAC
GGTGCGCAGGTCGGCGAGAACCGTGGGGTCCTGGGCGGCAACTACGTGATCGGCGAGGCGGCGCTCCTGCCG
CCTGCCGGTATCGACTACGGCAACATCTGGTAA