ViewGene

Locus Name:
GeneID:
Location:

GeneID:749
TrivialName: PA14_01600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01600
PAO1 Ortholog Locus:PA0130
Sequence Length:1494
Protein Length:497
Start: 146970
Stop: 145477
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03520.1|AE004451_1 (AE004451) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 497/497 (100%), Positives = 497/497 (100%)
Sequence:
ATGGGCACCCTCCACCACCTGATCAACGGCGAAATGGTCGCCGACAACGGCCGCAGCGCCGACGTCTTCAAC
CCCTCCACCGGCGAAGCCATCCACAAGGTCCCGCTGGCCGACGGCAAGACCCTGCAGAAAGCCATCGATGCC
GCCAGGGCCGCCTTCCCGGCCTGGCGCAACACCCCGCCGGCCAAGCGCGCACAGGTGCTGTACCGCTTCAAG
CAACTGCTGGAGCAGAACGAGGCGCGGATTTCCAAGCTGATCAGCGAAGAGCACGGCAAGACCCTGGAAGAC
GCCGCCGGCGAACTCAAGCGCGGCATCGAGAACGTCGAGTACGCCTGCGCCGCCCCGGAAATCCTCAAGGGC
GAGTACAGCCGCAACGTCGGCCCGAACATCGACGCCTGGAGCGACTTCCAGCCGATCGGCGTGGTCGCCGGG
ATCACCCCGTTCAACTTCCCGGCGATGGTGCCGCTGTGGATGTACCCGCTGGCCATCGCCTGCGGCAACACC
TTCATCCTCAAGCCCTCCGAGCGCGACCCCAGCTCCACCCTGCTGATCGCCGAGCTGTTCCACGAAGCCGGC
CTGCCGAAGGGCGTGCTGAACGTGGTGCACGGCGACAAGGAAGCCGTGGACGGCCTGCTCCAGGCGCCGGAA
GTGAAAGCCATCAGCTTCGTCGGCTCGACCCCCATCGCCGAATACATCTATGCCGAGGGCACCAAGCGCGGC
AAGCGCGTGCAGGCCCTGGGCGGCGCGAAGAACCATGCGGTGCTGATGCCCGACGCCGACCTCGACAACGCC
GTCAGCGCGCTGATGGGTGCCGCCTACGGCTCCTGCGGCGAGCGCTGCATGGCGATCTCGGTGGCGGTATGC
GTCGGCGACCAGGTGGCCGACGCGCTGATCGCCAAGCTGGTTCCGCAGATCAAGGCGCTGAAGATCGGCGCC
GGCACTTCCTGCGGCCTCGACATGGGCCCGCTGGTCACTGCCGCCGCGCAGGCCAAGGTCACCGGCTACATC
GACAGCGGCGTGGCCCAGGGCGCGGAGCTGGTGGTGGACGGCCGCGGCTACCAGGTCGCCGGCCACGAGAAC
GGCTTCTTCCTCGGCGGCAGCCTGTTCGACCGGGTGACCCCGGAAATGACCATCTACAAGGAAGAGATCTTC
GGCCCGGTGCTGTGCGTGGTTCGCGTCAACAGCCTGGAAGAGGCCATGCAGTTGATCAACGACCACGAATAC
GGCAACGGCACCTGCATCTTCACTCGCGACGGCGAGGCCGCCCGCCTGTTCTGCGACGAGATCGAGGTCGGC
ATGGTCGGCGTCAACGTCCCGCTGCCGGTGCCGGTAGCCTACCACAGCTTCGGCGGCTGGAAGCGCTCGCTG
TTCGGCGACCTCCACGCCTACGGCCCGGACGGCGTGCGCTTCTACACCCGGCGCAAGGCCATCACCCAGCGC
TGGCCGCAGCGGGCCAGCCACGAGGCCTCGCAATTCGCCTTCCCCAGCCTCTGA
Translation:
MGTLHHLINGEMVADNGRSADVFNPSTGEAIHKVPLADGKTLQKAIDAARAAFPAWRNTPPAKRAQVLYRFK
QLLEQNEARISKLISEEHGKTLEDAAGELKRGIENVEYACAAPEILKGEYSRNVGPNIDAWSDFQPIGVVAG
ITPFNFPAMVPLWMYPLAIACGNTFILKPSERDPSSTLLIAELFHEAGLPKGVLNVVHGDKEAVDGLLQAPE
VKAISFVGSTPIAEYIYAEGTKRGKRVQALGGAKNHAVLMPDADLDNAVSALMGAAYGSCGERCMAISVAVC
VGDQVADALIAKLVPQIKALKIGAGTSCGLDMGPLVTAAAQAKVTGYIDSGVAQGAELVVDGRGYQVAGHEN
GFFLGGSLFDRVTPEMTIYKEEIFGPVLCVVRVNSLEEAMQLINDHEYGNGTCIFTRDGEAARLFCDEIEVG
MVGVNVPLPVPVAYHSFGGWKRSLFGDLHAYGPDGVRFYTRRKAITQRWPQRASHEASQFAFPSL*
AnnotationID:758GeneID:749
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 05:05:53
Gene Name:
Confidence Code:3
GeneProduct:putative aldehyde dehydrogenase
Cell Localization:()
Synonyms:mmsA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative methylmalonate-semialdehyde dehydrogenase
Functional Category Confidence Code:5
COGs:pfam00171,COG1012
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66224.1|AE016250_6 (AE016776) methylmalonate-semialdehyde dehydrogenase [Pseudomonas
           putida KT2440]
          Length = 497

 Score =  904 bits (2336), Expect = 0.0
 Identities = 440/497 (88%), Positives = 474/497 (95%)

>gb|AAO54317.1| (AE016858) methylmalonate-semialdehyde dehydrogenase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 497

 Score =  894 bits (2311), Expect = 0.0
 Identities = 433/497 (87%), Positives = 468/497 (94%)

>emb|CAE31367.1| (BX640439) putative methylmalonate-semialdehyde dehydrogenase
           [acylating] [Bordetella bronchiseptica]
          Length = 497

 Score =  639 bits (1648), Expect = 0.0
 Identities = 311/496 (62%), Positives = 380/496 (76%), Gaps = 3/496 (0%)

Structural Features:
pfam00171, Aldedh, Aldehyde dehydrogenase family.
CD-Length = 464 residues,  99.4% aligned
Score =  456 bits (1175), Expect = 3e-129
Identities = 184/469 (39%), Positives = 269/469 (57%), Gaps = 9/469 (1%)

COG1012, PutA, NAD-dependent aldehyde dehydrogenases 
[Energy production and conversion]
CD-Length = 472 residues,  99.6% aligned
Score =  441 bits (1136), Expect = 7e-125
Identities = 190/481 (39%), Positives = 259/481 (53%), Gaps = 13/481 (2%)
Genomic Context:
Comment:
ReferenceID:1501
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18643
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33505
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:749_cdd.html
URL:
Homologs By Global Alignment
Gene ID:749

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1319 PA0130_tr translation of PA0130 497 99.99 99.99 0 2590.0
49404 gb|AAG03520.1|AE004451_1 (AE004451) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1] 497 99.99 99.99 0 2590.0
49405 gb|AAN66224.1|AE016250_6 (AE016776) methylmalonate-semialdehyde dehydrogenase [Pseudomonas putida KT2440] 497 88.53 95.37 0 2336.0
49406 gb|AAO54317.1| (AE016858) methylmalonate-semialdehyde dehydrogenase [Pseudomonas syringae pv. tomato str. DC3000] 497 87.12 94.16 0 2311.0
49407 gb|AAQ59112.1| (AE016915) methylmalonate-semialdehyde dehydrogenase [Chromobacterium violaceum ATCC 12472] 497 85.11 90.14 0 2208.0
GC ORFID: 43751How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0130Glimmer Score:
Start: 5948309Stop: 5946816
Length: 1494
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0130 translation of PA0130Homolog Bit Score 1002.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3505 (ORF: BLASTX 898.0), psyr_15may02_Scaffold2_revised_gene3039 (ORF: BLASTX 600.0), t_PA3570 (ORF: BLASTX 499.0), psyr_15may02_Scaffold2_revised_gene3514 (ORF: BLASTX 470.0), t_PA0747 (ORF: BLASTX 459.0), t_PA0130 (ORF: GLIMMER)
GC ORF Sequence
ATGGGCACCCTCCACCACCTGATCAACGGCGAAATGGTCGCCGACAACGGCCGCAGCGCCGACGTCTTCAAC
CCCTCCACCGGCGAAGCCATCCACAAGGTCCCGCTGGCCGACGGCAAGACCCTGCAGAAAGCCATCGATGCC
GCCAGGGCCGCCTTCCCGGCCTGGCGCAACACCCCGCCGGCCAAGCGCGCACAGGTGCTGTACCGCTTCAAG
CAACTGCTGGAGCAGAACGAGGCGCGGATTTCCAAGCTGATCAGCGAAGAGCACGGCAAGACCCTGGAAGAC
GCCGCCGGCGAACTCAAGCGCGGCATCGAGAACGTCGAGTACGCCTGCGCCGCCCCGGAAATCCTCAAGGGC
GAGTACAGCCGCAACGTCGGCCCGAACATCGACGCCTGGAGCGACTTCCAGCCGATCGGCGTGGTCGCCGGG
ATCACCCCGTTCAACTTCCCGGCGATGGTGCCGCTGTGGATGTACCCGCTGGCCATCGCCTGCGGCAACACC
TTCATCCTCAAGCCCTCCGAGCGCGACCCCAGCTCCACCCTGCTGATCGCCGAGCTGTTCCACGAAGCCGGC
CTGCCGAAGGGCGTGCTGAACGTGGTGCACGGCGACAAGGAAGCCGTGGACGGCCTGCTCCAGGCGCCGGAA
GTGAAAGCCATCAGCTTCGTCGGCTCGACCCCCATCGCCGAATACATCTATGCCGAGGGCACCAAGCGCGGC
AAGCGCGTGCAGGCCCTGGGCGGCGCGAAGAACCATGCGGTGCTGATGCCCGACGCCGACCTCGACAACGCC
GTCAGCGCGCTGATGGGTGCCGCCTACGGCTCCTGCGGCGAGCGCTGCATGGCGATCTCGGTGGCGGTATGC
GTCGGCGACCAGGTGGCCGACGCGCTGATCGCCAAGCTGGTTCCGCAGATCAAGGCGCTGAAGATCGGCGCC
GGCACTTCCTGCGGCCTCGACATGGGCCCGCTGGTCACTGCCGCCGCGCAGGCCAAGGTCACCGGCTACATC
GACAGCGGCGTGGCCCAGGGCGCGGAGCTGGTGGTGGACGGCCGCGGCTACCAGGTCGCCGGCCACGAGAAC
GGCTTCTTCCTCGGCGGCAGCCTGTTCGACCGGGTGACCCCGGAAATGACCATCTACAAGGAAGAGATCTTC
GGCCCGGTGCTGTGCGTGGTTCGCGTCAACAGCCTGGAAGAGGCCATGCAGTTGATCAACGACCACGAATAC
GGCAACGGCACCTGCATCTTCACTCGCGACGGCGAGGCCGCCCGCCTGTTCTGCGACGAGATCGAGGTCGGC
ATGGTCGGCGTCAACGTCCCGCTGCCGGTGCCGGTAGCCTACCACAGCTTCGGCGGCTGGAAGCGCTCGCTG
TTCGGCGACCTCCACGCCTACGGCCCGGACGGCGTGCGCTTCTACACCCGGCGCAAGGCCATCACCCAGCGC
TGGCCGCAGCGGGCCAGCCACGAGGCCTCGCAATTCGCCTTCCCCAGCCTCTGA