ViewGene
Locus Name:
GeneID:
Location:

GeneID:748
TrivialName: PA14_65470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65470
PAO1 Ortholog Locus:PA4955
Sequence Length:1512
Protein Length:503
Start: 5831403
Stop: 5832914
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08340.1|AE004908_6 (AE004908) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 502/503 (99%), Positives = 502/503 (99%)
Sequence:
ATGACAGACCGCCTCGCCGCCTGGCTCGAAGAGCTCGACCGGCAACCCCTGCCGATCCCCGCCAGCCACTAT
GCCGGCCTGCACGCCGCGCTGAGCGACAGCCGCCGCTCGCTGCGCGAGATCGCCGACCAGTTGCAGGGCAGC
CCGACGCTGGCGTTGTCCATCCTGCGCGAGGCCAATCGCGCCGAGAGCGCCCGCGACAACCCCGCGGAAAGC
CTGGAGGTGGCCCTCAGCCGCCTCGGCCTGGCGCGCGCGAGCCAACTTCTGAAGACCCTGCCGAGCATCCAG
GATGCGGAGATGCCCAGGGTCCTCGGGCAGATGCTGCTGATCAGCCAGCACGCCATGCAGCAGGCCAGCGGC
CTGTTCGGCGCGCGCCTGGCCAGGCTCTGGCAGGAAATCCACTGGGGCAGCCTGCTGACCATGGCTCCGGTC
TGGGCGCTGGCCAACGCCCGCCCGCAGCTGCTGGAGCAATGGCAGCAACGCGTGCTGGTACAGGGCGAACCG
ACCCTGCGAGTGGAGCGCGAACTGCTCGGCATGCGCCTGCTGCCGATCTGCCTGGCGCTGGCCGAACGCTGG
CGGCTACCGCAGTGGGTCATCCAGGGCTATCGCCTGCTCGCCTGCGACCGTCGCCTGCTGGTTCGAGCCTTG
CGTATCGCCCGCGACCATCAGTCGCCCCTGCTCCAGCAACAGCAACTCGATGCCCAGCCCGATCTCGCCCGC
TGGCTGACCCAGCCGGCCAACTGCACTCTCCTCGCCAATGGCTTGGCCATCGCCGCGCACCAGAGCTGGGAC
GGGCCGCACATGCTGCGCTGGCAGCGCCTGACCGGTCTGTACCTGGGCCAGCCGCTGACCGAAGTCCAGCAG
CAGGTGCACATGCTCGCCGCGCAAAGCGCGCGCCTGCACGCCCGGCCGCCGCTGTGGCATCCGGCGGTGGCC
TTGATCTGGCCCTGGCAGGCCAGCCGCTGGCGTGCCGAAGCGGCGCCCCCGCCGCCGCCCTCGGCGGAAGCC
CTGGCCGAGTGGCGGCAGCATTGCGCCGAGTTGCTCCGCGAGCCCAGCCCGTTCAGCAACGTCGTGCAGCTC
ACCGCCTGTGCCCGCGATGCGCTGCGCGCCTGCGGCCTGCAAAGGATGCTGCTGCTGGTGGCCGATCGCACA
CAGGTACACGTGCTGGCGCAGCAGAGCGCCGGACTCGAACCGGGCCAGGAGAAATTGCAACTGGAGATTGCC
AGCAGCCCGCTGCTGAAGAAACTGTTCCAGCAGCCTGCCCTGCTGCGCATCGGCCCGAACAACCAGGACCAG
TTGCTGCCGGCCCTCGGCGAACCCTTGCGCCAACTGTTCCCCGGACCTCACCTGCTGCTGCGCTCGCTGGGC
AACGGCTCGCGGGTGGTGATGCTGGTCCTGGCCGACCTCGGCGGCCAGCCGTTCAGCGACCTGCATGCCCAG
GCCTTCGCCAAGACCGCCCAGTGCACCGAGCGCGCGATCCAGCAGTTCGGCCGCCAGCGCCGCACGGAATGA
Translation:
MTDRLAAWLEELDRQPLPIPASHYAGLHAALSDSRRSLREIADQLQGSPTLALSILREANRAESARDNPAES
LEVALSRLGLARASQLLKTLPSIQDAEMPRVLGQMLLISQHAMQQASGLFGARLARLWQEIHWGSLLTMAPV
WALANARPQLLEQWQQRVLVQGEPTLRVERELLGMRLLPICLALAERWRLPQWVIQGYRLLACDRRLLVRAL
RIARDHQSPLLQQQQLDAQPDLARWLTQPANCTLLANGLAIAAHQSWDGPHMLRWQRLTGLYLGQPLTEVQQ
QVHMLAAQSARLHARPPLWHPAVALIWPWQASRWRAEAAPPPPPSAEALAEWRQHCAELLREPSPFSNVVQL
TACARDALRACGLQRMLLLVADRTQVHVLAQQSAGLEPGQEKLQLEIASSPLLKKLFQQPALLRIGPNNQDQ
LLPALGEPLRQLFPGPHLLLRSLGNGSRVVMLVLADLGGQPFSDLHAQAFAKTAQCTERAIQQFGRQRRTE*
AnnotationID:757GeneID:748
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 15:03:37
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4955
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1499




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18641




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35112




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:748_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:748
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1318
                           PA4955_tr
                           translation of PA4955
                           503
                           99.80
                           99.80
                           0
                           2591.0
     

     
     
49400
                           gb|AAG08340.1|AE004908_6
                           (AE004908) hypothetical protein PA4955 [Pseudomonas aeruginosa PAO1]
                           503
                           99.80
                           99.80
                           0
                           2591.0
     

     
     
49401
                           gb|AAO58382.1|
                           (AE016873) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           513
                           51.26
                           68.22
                           12
                           1360.0
     

     
     
49402
                           gb|AAN70473.1|AE016689_1
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           514
                           51.16
                           65.17
                           14
                           1302.0
     

     
     
49403
                           gb|AAD33689.1|AF136403_1
                           (AF136403) unknown [Pseudomonas aeruginosa]
                           577
                           40.03
                           42.11
                           238
                           889.0
     

     






      

          
GC ORFID: 43750How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4955Glimmer Score: 

          
Start: 5095084Stop: 5096595

          
Length: 1512


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4955 translation of PA4955Homolog Bit Score 1002.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3667 (ORF: BLASTX 526.0), t_PA4955 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACAGACCGCCTCGCCGCCTGGCTCGAAGAGCTCGACCGGCAACCCCTGCCGATCCCCGCCAGCCACTAT 
GCCGGCCTGCACGCCGCGCTGAGCGACAGCCGCCGCTCGCTGCGCGAGATCGCCGACCAGTTGCAGGGCAGC 
CCGACGCTGGCGTTGTCCATCCTGCGCGAGGCCAATCGCGCCGAGAGCGCCCGCGACAACCCCGCGGAAAGC 
CTGGAGGTGGCCCTCAGCCGCCTCGGCCTGGCGCGCGCGAGCCAACTTCTGAAGACCCTGCCGAGCATCCAG 
GATGCGGAGATGCCCAGGGTCCTCGGGCAGATGCTGCTGATCAGCCAGCACGCCATGCAGCAGGCCAGCGGC 
CTGTTCGGCGCGCGCCTGGCCAGGCTCTGGCAGGAAATCCACTGGGGCAGCCTGCTGACCATGGCTCCGGTC 
TGGGCGCTGGCCAACGCCCGCCCGCAGCTGCTGGAGCAATGGCAGCAACGCGTGCTGGTACAGGGCGAACCG 
ACCCTGCGAGTGGAGCGCGAACTGCTCGGCATGCGCCTGCTGCCGATCTGCCTGGCGCTGGCCGAACGCTGG 
CGGCTACCGCAGTGGGTCATCCAGGGCTATCGCCTGCTCGCCTGCGACCGTCGCCTGCTGGTTCGAGCCTTG 
CGTATCGCCCGCGACCATCAGTCGCCCCTGCTCCAGCAACAGCAACTCGATGCCCAGCCCGATCTCGCCCGC 
TGGCTGACCCAGCCGGCCAACTGCACTCTCCTCGCCAATGGCTTGGCCATCGCCGCGCACCAGAGCTGGGAC 
GGGCCGCACATGCTGCGCTGGCAGCGCCTGACCGGTCTGTACCTGGGCCAGCCGCTGACCGAAGTCCAGCAG 
CAGGTGCACATGCTCGCCGCGCAAAGCGCGCGCCTGCACGCCCGGCCGCCGCTGTGGCATCCGGCGGTGGCC 
TTGATCTGGCCCTGGCAGGCCAGCCGCTGGCGTGCCGAAGCGGCGCCCCCGCCGCCGCCCTCGGCGGAAGCC 
CTGGCCGAGTGGCGGCAGCATTGCGCCGAGTTGCTCCGCGAGCCCAGCCCGTTCAGCAACGTCGTGCAGCTC 
ACCGCCTGTGCCCGCGATGCGCTGCGCGCCTGCGGCCTGCAAAGGATGCTGCTGCTGGTGGCCGATCGCACA 
CAGGTACACGTGCTGGCGCAGCAGAGCGCCGGACTCGAACCGGGCCAGGAGAAATTGCAACTGGAGATTGCC 
AGCAGCCCGCTGCTGAAGAAACTGTTCCAGCAGCCTGCCCTGCTGCGCATCGGCCCGAACAACCAGGACCAG 
TTGCTGCCGGCCCTCGGCGAACCCTTGCGCCAACTGTTCCCCGGACCTCACCTGCTGCTGCGCTCGCTGGGC 
AACGGCTCGCGGGTGGTGATGCTGGTCCTGGCCGACCTCGGCGGCCAGCCGTTCAGCGACCTGCATGCCCAG 
GCCTTCGCCAAGACCGCCCAGTGCACCGAGCGCGCGATCCAGCAGTTCGGCCGCCAGCGCCGCACGGAATGA