ViewGene
Locus Name:
GeneID:
Location:

GeneID:747
TrivialName: PA14_32940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32940
PAO1 Ortholog Locus:PA2449
Sequence Length:1536
Protein Length:511
Start: 2881131
Stop: 2882666
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05837.1|AE004672_5 (AE004672) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 511/511 (100%), Positives = 511/511 (100%)
Sequence:
ATGCGCATCCACGTCTCCTTCATCGACCGTGTCGGCATCACCCAGGAGGTGCTGGCGCTGCTGGGCGGGCGC
AACCTGAACCTGGACGCGGTGGAAATGGTGCCGCCGAACGTCTACATCGACGCGCCGACCCTCAGTCCCGAA
GTGCTGGAGGAACTGCGCGCAGCGCTGCTGGGCATCCGTGGCGTGCAGGCGATGACCGTGGTCGACATCCTT
CCCGGCCAGCGCCGCCGCTTGCAGCTCGATGCGTTGCTGGCGGCGATGGCCGATCCGGTGCTGGCGGTGGAC
GGCAAGGGCCTGGTGCTGCTGGCCAACCCGGCCTTCAGCGAGCGCTGCGGACGCGACCCGGCCGGCGAGCGG
CTGGCCAGCCTGTTCGACGATGAAACCCTGGAGGATGCGCTGGTCGAGCAGGGCTTCCGCCTGCCGCTGCGC
GAAGTGACCTTCATGGGCCAGGCCCTGCTGCTCGATGCCACGCCGATCACCGAAGGGCCGGGCGAGGGCGAG
CGGCACCTGGCCGGCGGCCTGTTGACCCTCTACGAACCGAACCGCATCGGCGAGCGCCTGGCTGCCTTGCAC
CATGACCATGCCGAGGGGTTCGAGATGCTCCTCGGCGATTCCCAGCCGATCCGCACCCTGAAGACCCGTGCG
CAGCGCGTGGCGGCGCTCGACGCGCCGCTGCTGATCCACGGCGAGACCGGTACCGGCAAGGAACTGGTGGCG
CGCGGCTGTCACGCCCTGAGTGCGCGGCACAACTCGCCGTTCCTGGCGCTGAACTGCGCGGCGTTGCCGGAG
AACCTGGCCGAAAGCGAGCTGTTCGGCTACGCCCCCGGCGCCTTCACCGGCGCCCAGCGCGGCGGCAAGCCA
GGCCTGCTGGAGCTGGCCCACCAGGGCACGGTGTTCCTCGACGAGATCGGCGAGATGTCCCCCTATCTGCAA
GCCAAGCTGCTGCGCTTCCTCAGCGACGGCAGCTTCCGCCGGGTCGGCGGCGACCGCGAGGTGAGGGTCGAC
GTGCGGATCCTCAGCGCCACCCACCGCAACCTGGAGAAGATGGTCGCCGAGGGCAGCTTCCGCGAGGACCTG
TTCTACCGCCTCAACGTGCTCAGCCTGGAAGTCCCGCCGTTGCGAGAGCGCGGCCACGACATCCTGCTGCTG
GCGCGGCACTTCATGCAGCAGGCCTGTGCGCAGATCCAGCGCCCGGTGTGTCGGCTGGCGCCGGGCACCTAC
CCGGCGCTGCTGAGCAACCGCTGGCCGGGCAACGTGCGCCAGTTGCAGAATGTGATCTTCCGCGCCGCTGCG
ATCTGCGAGAGCAGCCTGGTGGATATCGGCGACCTGGAGATCGCCGGCACCGCCGTGGCGCGGCAGAACGAC
GGCGAGGTGGGCAGCCTGGAGGAGGCGGTGGAGGGCTTCGAGAAAGCCCTGCTGGAGAAGCTCTACGTCAGC
TATCCATCGACCCGCCAGTTGGCGGCGCGCCTGCAAACCTCGCACACCGCCATCGCCCACCGCCTGCGCAAG
TACGGCATCGGTCCGCGCGCCTGA
Translation:
MRIHVSFIDRVGITQEVLALLGGRNLNLDAVEMVPPNVYIDAPTLSPEVLEELRAALLGIRGVQAMTVVDIL
PGQRRRLQLDALLAAMADPVLAVDGKGLVLLANPAFSERCGRDPAGERLASLFDDETLEDALVEQGFRLPLR
EVTFMGQALLLDATPITEGPGEGERHLAGGLLTLYEPNRIGERLAALHHDHAEGFEMLLGDSQPIRTLKTRA
QRVAALDAPLLIHGETGTGKELVARGCHALSARHNSPFLALNCAALPENLAESELFGYAPGAFTGAQRGGKP
GLLELAHQGTVFLDEIGEMSPYLQAKLLRFLSDGSFRRVGGDREVRVDVRILSATHRNLEKMVAEGSFREDL
FYRLNVLSLEVPPLRERGHDILLLARHFMQQACAQIQRPVCRLAPGTYPALLSNRWPGNVRQLQNVIFRAAA
ICESSLVDIGDLEIAGTAVARQNDGEVGSLEEAVEGFEKALLEKLYVSYPSTRQLAARLQTSHTAIAHRLRK
YGIGPRA*
AnnotationID:756GeneID:747
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 14:02:47
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:()
Synonyms:PA2449
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
58% similar phenylalanine hydroxylase gene cluster transcription activator PhhR [Pseudomonas aeruginosa].






 
Structural Features:
PS00675: Sigma-54 interaction domain ATP-binding region A signature.






   
Genomic Context:






   
Comment:


















    ReferenceID:1497




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18639




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:747
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1302
                           PA2449_tr
                           translation of PA2449
                           511
                           99.99
                           99.99
                           0
                           2590.0
     

     
     
48855
                           gb|AAG05837.1|AE004672_5
                           (AE004672) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           511
                           99.99
                           99.99
                           0
                           2590.0
     

     
     
48856
                           gb|AAO54804.1|
                           (AE016860) transcriptional regulator TyrR, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           512
                           81.83
                           88.28
                           11
                           2099.0
     

     
     
48857
                           gb|AAN66622.1|AE016289_10
                           (AE016777) sigma-54 dependent transcriptional regulator/sensory box protein [Pseudomonas putida KT2440]
                           511
                           78.08
                           85.90
                           9
                           2018.0
     

     
     
48858
                           gb|AAG04262.1|AE004522_4
                           (AE004522) transcriptional regulator PhhR [Pseudomonas aeruginosa PAO1]
                           521
                           43.95
                           60.84
                           12
                           1015.0
     

     






      

          
GC ORFID: 43749How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2449Glimmer Score: 

          
Start: 2072793Stop: 2071258

          
Length: 1536


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2449 translation of PA2449Homolog Bit Score 1002.0

          
Other Homologs:  t_PA0873 (ORF: BLASTX 391.0), psyr_15may02_Scaffold8_revised_gene7804 (ORF: BLASTX 371.0), psyr_15may02_Scaffold2_revised_gene3558 (ORF: BLASTX 244.0), t_PA1945 (ORF: BLASTX 233.0), t_PA4547 (ORF: BLASTX 233.0), psyr_15may02_Scaffold15_revised_gene2516 (ORF: BLASTX 231.0), t_PA1196 (ORF: BLASTX 228.0), t_PA5483 (ORF: BLASTX 217.0), t_PA2665 (ORF: BLASTX 214.0), t_PA5166 (ORF: BLASTX 213.0), psyr_15may02_Scaffold5_revised_gene6135 (ORF: BLASTX 212.0), psyr_15may02_Scaffold2_revised_gene4053 (ORF: BLASTX 210.0), t_PA5511 (ORF: BLASTX 205.0), psyr_15may02_Scaffold3_revised_gene4480 (ORF: BLASTX 174.0), psyr_15may02_Scaffold3_revised_gene4481 (ORF: BLASTX 173.0), t_PA2449 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCATCCACGTCTCCTTCATCGACCGTGTCGGCATCACCCAGGAGGTGCTGGCGCTGCTGGGCGGGCGC 
AACCTGAACCTGGACGCGGTGGAAATGGTGCCGCCGAACGTCTACATCGACGCGCCGACCCTCAGTCCCGAA 
GTGCTGGAGGAACTGCGCGCAGCGCTGCTGGGCATCCGTGGCGTGCAGGCGATGACCGTGGTCGACATCCTT 
CCCGGCCAGCGCCGCCGCTTGCAGCTCGATGCGTTGCTGGCGGCGATGGCCGATCCGGTGCTGGCGGTGGAC 
GGCAAGGGCCTGGTGCTGCTGGCCAACCCGGCCTTCAGCGAGCGCTGCGGACGCGACCCGGCCGGCGAGCGG 
CTGGCCAGCCTGTTCGACGATGAAACCCTGGAGGATGCGCTGGTCGAGCAGGGCTTCCGCCTGCCGCTGCGC 
GAAGTGACCTTCATGGGCCAGGCCCTGCTGCTCGATGCCACGCCGATCACCGAAGGGCCGGGCGAGGGCGAG 
CGGCACCTGGCCGGCGGCCTGTTGACCCTCTACGAACCGAACCGCATCGGCGAGCGCCTGGCTGCCTTGCAC 
CATGACCATGCCGAGGGGTTCGAGATGCTCCTCGGCGATTCCCAGCCGATCCGCACCCTGAAGACCCGTGCG 
CAGCGCGTGGCGGCGCTCGACGCGCCGCTGCTGATCCACGGCGAGACCGGTACCGGCAAGGAACTGGTGGCG 
CGCGGCTGTCACGCCCTGAGTGCGCGGCACAACTCGCCGTTCCTGGCGCTGAACTGCGCGGCGTTGCCGGAG 
AACCTGGCCGAAAGCGAGCTGTTCGGCTACGCCCCCGGCGCCTTCACCGGCGCCCAGCGCGGCGGCAAGCCA 
GGCCTGCTGGAGCTGGCCCACCAGGGCACGGTGTTCCTCGACGAGATCGGCGAGATGTCCCCCTATCTGCAA 
GCCAAGCTGCTGCGCTTCCTCAGCGACGGCAGCTTCCGCCGGGTCGGCGGCGACCGCGAGGTGAGGGTCGAC 
GTGCGGATCCTCAGCGCCACCCACCGCAACCTGGAGAAGATGGTCGCCGAGGGCAGCTTCCGCGAGGACCTG 
TTCTACCGCCTCAACGTGCTCAGCCTGGAAGTCCCGCCGTTGCGAGAGCGCGGCCACGACATCCTGCTGCTG 
GCGCGGCACTTCATGCAGCAGGCCTGTGCGCAGATCCAGCGCCCGGTGTGTCGGCTGGCGCCGGGCACCTAC 
CCGGCGCTGCTGAGCAACCGCTGGCCGGGCAACGTGCGCCAGTTGCAGAATGTGATCTTCCGCGCCGCTGCG 
ATCTGCGAGAGCAGCCTGGTGGATATCGGCGACCTGGAGATCGCCGGCACCGCCGTGGCGCGGCAGAACGAC 
GGCGAGGTGGGCAGCCTGGAGGAGGCGGTGGAGGGCTTCGAGAAAGCCCTGCTGGAGAAGCTCTACGTCAGC 
TATCCATCGACCCGCCAGTTGGCGGCGCGCCTGCAAACCTCGCACACCGCCATCGCCCACCGCCTGCGCAAG 
TACGGCATCGGTCCGCGCGCCTGA