ViewGene
Locus Name:
GeneID:
Location:

GeneID:745
TrivialName: PA14_12490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12490
PAO1 Ortholog Locus:PA3970
Sequence Length:1500
Protein Length:499
Start: 1074613
Stop: 1076112
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07357.1|AE004815_1 (AE004815) AMP nucleosidase [Pseudomonas aeruginosa PAO1]
Identities = 499/499 (100%), Positives = 499/499 (100%)
Sequence:
ATGCGAACCGACAGGAAGCCCACCATGAGTATCGATTCCGACGACGGGTTCGTCGTCGCCCGCACGGCCGAG
GAGGCCGTCGACCGTCTTGCCGAGCTGCACCGCCAGGCCACCGCGGCGCTGAGCCAGGCGCTCAAGCGCTAC
ATCAAGGAGCGCATCGAGCCGAGCGAGGCCGAGCGGCAGAACTTTCACTACCCGCAACTGCGCATCGGCTAC
CGCTGCCAGGGCGAGGTGCCGTCCACCACCCGCGCCTACGCCAAGGTCCAGGTGCCGGGCGAATACAGCGTC
ACCGTCACCCACCCCGACGCCTTCCGCAAGTACCTGCTGGAACAGTTGCGTCCGCTGATGGACGATTTCACC
GTGCAGGTGCAGGTCGGCCCGAGCCAACAGGACATCCCCTATCCCTACGTGGTCGAGCAGGGCGACGAGCTG
GCCGGCTCCGGGGTGACCGCCGCCGAGCTGGCGCGGGTGTTCCCCAGCACCGACCTGTCCGCCGCTTCCGAC
GACATCGCCGACGGCCTCTACGAATGGGAACGCGCCGACCAGTTGCCGCTGGCGCTGTTCGACGCCGCGCGG
GTGGACTTCTCCCTGCGCCGCCTGGTGCACTACACCGGCAGCGACTGGCGCCACGTGCAGCCGTGGATCCTG
CTGACCAACTACCACCGCTACGTCGACCAGTTCATCCGCCTCGGCCTGACCCGCCTGCGCGAGGACCCGCGC
TTCGTGCGCATGGTCCTGCCGGGCAACGTGATCATCGAACGCGGGATGGACGAAGGCGAGGCCAACGCCATC
GTCGCCGGGGTGGTCTGGCACCGCTACCAGATGCCGGCCTACCACCTGATCGCCGCCGATGGCGACGGCATC
ACCCTGGTCAACATCGGGGTCGGCCCGTCCAACGCGAAGAACATCACCGACCACCTGGCGGTGTTGCGTCCG
CATTGCTGGCTGATGATCGGCCACTGCGGCGGCCTGCGGCAGTCGCAGACCATCGGCGACTACGTACTGGCG
CACGCCTACATGCGCCGCGACGGCATCCTCGACCGCGCGCTGCCGCCGCACATCCCGATCCCGGCGCTGGCC
GAGGTCCAGGTCGCCTTGCAGGAAGCCGCCGCCGAAGTCACCGGCGAGCGCGGCGAGTCGCTCAAGCGACGC
TTGCGCACCGGCACCGTGCTCACCTACGACGACCGCAACTGGGAGCTGCGCTGGGCCCAGGAGCGGCCACTG
ATCAACCTGGCGCGGGCCATCGCGGTGGATATGGAGAGCGGCACCATCGCCGCCCAGGGCTACCGCCTGCGG
GTGCCCTACGGCACGTTGCTGTGCGTCTCGGACAAGCCGCTGCACAGCGAGATCAAGCTGCCCGGCTCGGCC
AACGCCTTCtaCGAGCGCGCGGTGAACCAGCACCTGCGGATCGGCATCGCCGCCCTCGACCTGTTGCGCAGC
CAGCTCAACTCGCTGCACTCGCGCAAGCTGCGGAGTTTCGACGAGCCGCCGTTCCGTTGA
Translation:
MRTDRKPTMSIDSDDGFVVARTAEEAVDRLAELHRQATAALSQALKRYIKERIEPSEAERQNFHYPQLRIGY
RCQGEVPSTTRAYAKVQVPGEYSVTVTHPDAFRKYLLEQLRPLMDDFTVQVQVGPSQQDIPYPYVVEQGDEL
AGSGVTAAELARVFPSTDLSAASDDIADGLYEWERADQLPLALFDAARVDFSLRRLVHYTGSDWRHVQPWIL
LTNYHRYVDQFIRLGLTRLREDPRFVRMVLPGNVIIERGMDEGEANAIVAGVVWHRYQMPAYHLIAADGDGI
TLVNIGVGPSNAKNITDHLAVLRPHCWLMIGHCGGLRQSQTIGDYVLAHAYMRRDGILDRALPPHIPIPALA
EVQVALQEAAAEVTGERGESLKRRLRTGTVLTYDDRNWELRWAQERPLINLARAIAVDMESGTIAAQGYRLR
VPYGTLLCVSDKPLHSEIKLPGSANAFYERAVNQHLRIGIAALDLLRSQLNSLHSRKLRSFDEPPFR*
AnnotationID:754GeneID:745
AnnotatorUID: urbach
Modification Date/Time: 2004-05-24 12:12:58
Gene Name:
Confidence Code:2
GeneProduct:AMP nucleosidase
Cell Localization:()
Synonyms:PA3970
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0775, pfam01048
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAA23433.1| (M30469) AMP nucleosidase [Escherichia coli]
Length: 504
PctIdentity: 51.19
PctSimilarity: 65.07
Gaps: 26
BitScore: 1247.0






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1493




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18635




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32306




  
Author/Investigator(s):
        Leung,H.B., Kvalnes-Krick,K.L., Meyer,S.L., deRiel,J.K. and
 Schramm,V.L.





  
Title:
        Structure and regulation of the AMP nucleosidase gene (amn) from 
Escherichia coli




  
PubMed:
        2690948


MedLine:
        90105402




    
Source:
Biochemistry 28 (22), 8726-8733 (1989)






    
Reference Type:Online 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=AAA23433.1









           
Homologs By Global Alignment 

           

       



     
Gene ID:745
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1299
                           PA3970_tr
                           translation of PA3970
                           499
                           99.99
                           99.99
                           0
                           2595.0
     

     
     
48790
                           gb|AAG07357.1|AE004815_1
                           (AE004815) AMP nucleosidase [Pseudomonas aeruginosa PAO1]
                           499
                           99.99
                           99.99
                           0
                           2595.0
     

     
     
48791
                           gb|AAO58224.1|
                           (AE016873) AMP nucleosidase [Pseudomonas syringae pv. tomato str. DC3000]
                           499
                           82.36
                           89.17
                           12
                           2181.0
     

     
     
48792
                           gb|AAN70348.1|AE016676_8
                           (AE016792) AMP nucleosidase [Pseudomonas putida KT2440]
                           520
                           79.61
                           86.73
                           25
                           2170.0
     

     
     
48794
                           gb|AAL01558.1|
                           (AY046057) Amn [Escherichia fergusonii]
                           510
                           52.94
                           67.25
                           37
                           1304.0
     

     






      

          
GC ORFID: 43747How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3970Glimmer Score: 

          
Start: 3879325Stop: 3877826

          
Length: 1500


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3970 translation of PA3970Homolog Bit Score 1004.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5346 (ORF: BLASTX 847.0), t_PA3970 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGAACCGACAGGAAGCCCACCATGAGTATCGATTCCGACGACGGGTTCGTCGTCGCCCGCACGGCCGAG 
GAGGCCGTCGACCGTCTTGCCGAGCTGCACCGCCAGGCCACCGCGGCGCTGAGCCAGGCGCTCAAGCGCTAC 
ATCAAGGAGCGCATCGAGCCGAGCGAGGCCGAGCGGCAGAACTTTCACTACCCGCAACTGCGCATCGGCTAC 
CGCTGCCAGGGCGAGGTGCCGTCCACCACCCGCGCCTACGCCAAGGTCCAGGTGCCGGGCGAATACAGCGTC 
ACCGTCACCCACCCCGACGCCTTCCGCAAGTACCTGCTGGAACAGTTGCGTCCGCTGATGGACGATTTCACC 
GTGCAGGTGCAGGTCGGCCCGAGCCAACAGGACATCCCCTATCCCTACGTGGTCGAGCAGGGCGACGAGCTG 
GCCGGCTCCGGGGTGACCGCCGCCGAGCTGGCGCGGGTGTTCCCCAGCACCGACCTGTCCGCCGCTTCCGAC 
GACATCGCCGACGGCCTCTACGAATGGGAACGCGCCGACCAGTTGCCGCTGGCGCTGTTCGACGCCGCGCGG 
GTGGACTTCTCCCTGCGCCGCCTGGTGCACTACACCGGCAGCGACTGGCGCCACGTGCAGCCGTGGATCCTG 
CTGACCAACTACCACCGCTACGTCGACCAGTTCATCCGCCTCGGCCTGACCCGCCTGCGCGAGGACCCGCGC 
TTCGTGCGCATGGTCCTGCCGGGCAACGTGATCATCGAACGCGGGATGGACGAAGGCGAGGCCAACGCCATC 
GTCGCCGGGGTGGTCTGGCACCGCTACCAGATGCCGGCCTACCACCTGATCGCCGCCGATGGCGACGGCATC 
ACCCTGGTCAACATCGGGGTCGGCCCGTCCAACGCGAAGAACATCACCGACCACCTGGCGGTGTTGCGTCCG 
CATTGCTGGCTGATGATCGGCCACTGCGGCGGCCTGCGGCAGTCGCAGACCATCGGCGACTACGTACTGGCG 
CACGCCTACATGCGCCGCGACGGCATCCTCGACCGCGCGCTGCCGCCGCACATCCCGATCCCGGCGCTGGCC 
GAGGTCCAGGTCGCCTTGCAGGAAGCCGCCGCCGAAGTCACCGGCGAGCGCGGCGAGTCGCTCAAGCGACGC 
TTGCGCACCGGCACCGTGCTCACCTACGACGACCGCAACTGGGAGCTGCGCTGGGCCCAGGAGCGGCCACTG 
ATCAACCTGGCGCGGGCCATCGCGGTGGATATGGAGAGCGGCACCATCGCCGCCCAGGGCTACCGCCTGCGG 
GTGCCCTACGGCACGTTGCTGTGCGTCTCGGACAAGCCGCTGCACAGCGAGATCAAGCTGCCCGGCTCGGCC 
AACGCCTTCtaCGAGCGCGCGGTGAACCAGCACCTGCGGATCGGCATCGCCGCCCTCGACCTGTTGCGCAGC 
CAGCTCAACTCGCTGCACTCGCGCAAGCTGCGGAGTTTCGACGAGCCGCCGTTCCGTTGA