ViewGene
Locus Name:
GeneID:
Location:

GeneID:743
TrivialName: PA14_36260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36260
PAO1 Ortholog Locus:PA2200
Sequence Length:1596
Protein Length:531
Start: 3230203
Stop: 3228608
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05588.1|AE004646_9 (AE004646) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 500/531 (94%), Positives = 515/531 (96%)
Sequence:
ATGTCCGAGCGTGAAACGGCTGCCGCGGGCCGGATCAACTGGCGGCGGATCCTGCCGATACTGCTCACCACG
TCGTTGGTGGGCGGTGTCTGCGGGATCTTCGTGATCAACGAACTGGATCGCCAGCACGACGGGGCGCACCTG
GCGTCCTACACCGAAATGGCCCTGGAGCGGGCGCTGGAGATTTCCTCCGCGGCCGAGCAGATGCTCCACGAG
ATGAACGCCGGCGGCCCCGCGGCCTGCAGCGACCAGGACTTGGAGGCGCTGCGCGCCATCGTGCTCGAATCG
CGCTTCATGAGCGACGTCGGCCGGGTCAGCGGCAATCGCATCGTCTGTACCGGCGTCCGCGGCCGGCTACGA
TCGCCGTGGGGGCTGGCTGCGCCCGACCGGATCGACGCCAGAGGCACCCGCTTCTGGTCGGAGGGCATGCCC
TTGCCCCTGCAGATGCTGCCTTCCGGCCTGGTCGGGCGCGGCAACGCCATCCTCTTCATCGCCCCGCATGCC
TACTTCGATGTCGACCACCCGGACCCGGGCATCTCGGCGGCGGCCGTCAGCCGCGGCGGCGACTACATCTAC
CACCGTTTCGCCTGGGACGACGACCAGCCCCTCGAGGCGCTCGGCCGGCCCGGCTGGCCGCGCTTCATCGGC
GCCCGGCAGATAAGCCTGTGCGACCCGACGCAGGACATCTGCGTGGTCTCCCTTCTCCGTGAACGCGGCCTG
CTTGGCACCGAGCCCGGACGCGCGGCCATGGCCGCGGCGCTCGGCGGCGGGCTGTTGTTCGGCGTCATGCTG
CTGCTCAGCTACCTGTTCGGCTTCCTCAACGACGAAAAACTGCCAGCCAGGCTGCTGCGCGCGTTGAAGCGC
GAGGCCCTGGAGGTGCACTACCAGCCCATCGTGCGCCTGGCCAGCGGCCGCTGCGCCGGGGTCGAGGCCCTG
GCGCGCTGGACCGATAGCAGCCTGGGGCGGGTTTCCCCGGATGTCTTCATCGGCGCCCTGGAGGAGAGCGGC
GACATCGAACTGCTGACCCGTTTCGTCTTCCGCCGCGCCCTGAAGCAGCTCGGGCCGTTGCTGAGGGAGCAG
CGGAGCTTCTACGTCAGTGTCAACGTCACCGGCAAGGACATCGCCGACCCCGGTTTCATCGATTTCGCCATG
CGCCAGATGGCCAGGGAAAGCGTGCGCCCGGAACAGGTCGCGCTGGAACTGACCGAGCGCACCACCGAGGCC
CAGGGCTGCCTGCTGGCCGGGATGAACCGCCTGCGCGAACTCGGCCTGAAGATCTACGTGGACGATTTCGGC
ACCGGTCATTCGAACCTGGTCTACCTGGCCAACCTGCCGGTCGACGCGATCAAGATCGACAAGGTCTTCACC
CAGTCCATCGGCGACAGCAGCGCCGTCGAACTGATCTTCGACAAGCTCTGCTCGATGGCCGAGCACCTGGAG
ATCGGCGTGGTCGTCGAAGGGATCGAGACACAGGCCCAGGCCGACCACGTGCTGCGCCGCTCGCCCGAGGCC
CTCGGCCAGGGCTGGCATTTCGGCAAGGCACTGCCGCTGGAGGCCTTCCTCGGCTACTACCGGAACCAGCCG
ACGGGCCGCTAG
Translation:
MSERETAAAGRINWRRILPILLTTSLVGGVCGIFVINELDRQHDGAHLASYTEMALERALEISSAAEQMLHE
MNAGGPAACSDQDLEALRAIVLESRFMSDVGRVSGNRIVCTGVRGRLRSPWGLAAPDRIDARGTRFWSEGMP
LPLQMLPSGLVGRGNAILFIAPHAYFDVDHPDPGISAAAVSRGGDYIYHRFAWDDDQPLEALGRPGWPRFIG
ARQISLCDPTQDICVVSLLRERGLLGTEPGRAAMAAALGGGLLFGVMLLLSYLFGFLNDEKLPARLLRALKR
EALEVHYQPIVRLASGRCAGVEALARWTDSSLGRVSPDVFIGALEESGDIELLTRFVFRRALKQLGPLLREQ
RSFYVSVNVTGKDIADPGFIDFAMRQMARESVRPEQVALELTERTTEAQGCLLAGMNRLRELGLKIYVDDFG
TGHSNLVYLANLPVDAIKIDKVFTQSIGDSSAVELIFDKLCSMAEHLEIGVVVEGIETQAQADHVLRRSPEA
LGQGWHFGKALPLEAFLGYYRNQPTGR*
AnnotationID:752GeneID:743
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 13:01:44
Gene Name:
Confidence Code:3
GeneProduct:putative signal transduction protein
Cell Localization:()
Synonyms:PA2200
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4943
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE33620.1| (BX640446) putative membrane protein [Bordetella bronchiseptica]
          Length = 523

 Score =  242 bits (617), Expect = 5e-63
 Identities = 161/482 (33%), Positives = 243/482 (50%), Gaps = 31/482 (6%)






 
Structural Features:
COG4943, Predicted signal transduction protein containing sensor and EAL domains 
[Signal transduction mechanisms]
CD-Length = 524 residues,  99.4% aligned
Score =  608 bits (1568), Expect = 7e-175
Identities = 148/522 (28%), Positives = 220/522 (42%), Gaps = 1/522 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1489




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18631




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32553




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:743_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:743
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1294
                           PA2200_tr
                           translation of PA2200
                           531
                           94.16
                           96.98
                           0
                           2595.0
     

     
     
48756
                           gb|AAG05588.1|AE004646_9
                           (AE004646) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           531
                           94.16
                           96.98
                           0
                           2595.0
     

     






      

          
GC ORFID: 43745How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2200Glimmer Score: 

          
Start: 1723713Stop: 1725308

          
Length: 1596


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2200 translation of PA2200Homolog Bit Score 1004.0

          
Other Homologs:  t_PA2200 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGAGCGTGAAACGGCTGCCGCGGGCCGGATCAACTGGCGGCGGATCCTGCCGATACTGCTCACCACG 
TCGTTGGTGGGCGGTGTCTGCGGGATCTTCGTGATCAACGAACTGGATCGCCAGCACGACGGGGCGCACCTG 
GCGTCCTACACCGAAATGGCCCTGGAGCGGGCGCTGGAGATTTCCTCCGCGGCCGAGCAGATGCTCCACGAG 
ATGAACGCCGGCGGCCCCGCGGCCTGCAGCGACCAGGACTTGGAGGCGCTGCGCGCCATCGTGCTCGAATCG 
CGCTTCATGAGCGACGTCGGCCGGGTCAGCGGCAATCGCATCGTCTGTACCGGCGTCCGCGGCCGGCTACGA 
TCGCCGTGGGGGCTGGCTGCGCCCGACCGGATCGACGCCAGAGGCACCCGCTTCTGGTCGGAGGGCATGCCC 
TTGCCCCTGCAGATGCTGCCTTCCGGCCTGGTCGGGCGCGGCAACGCCATCCTCTTCATCGCCCCGCATGCC 
TACTTCGATGTCGACCACCCGGACCCGGGCATCTCGGCGGCGGCCGTCAGCCGCGGCGGCGACTACATCTAC 
CACCGTTTCGCCTGGGACGACGACCAGCCCCTCGAGGCGCTCGGCCGGCCCGGCTGGCCGCGCTTCATCGGC 
GCCCGGCAGATAAGCCTGTGCGACCCGACGCAGGACATCTGCGTGGTCTCCCTTCTCCGTGAACGCGGCCTG 
CTTGGCACCGAGCCCGGACGCGCGGCCATGGCCGCGGCGCTCGGCGGCGGGCTGTTGTTCGGCGTCATGCTG 
CTGCTCAGCTACCTGTTCGGCTTCCTCAACGACGAAAAACTGCCAGCCAGGCTGCTGCGCGCGTTGAAGCGC 
GAGGCCCTGGAGGTGCACTACCAGCCCATCGTGCGCCTGGCCAGCGGCCGCTGCGCCGGGGTCGAGGCCCTG 
GCGCGCTGGACCGATAGCAGCCTGGGGCGGGTTTCCCCGGATGTCTTCATCGGCGCCCTGGAGGAGAGCGGC 
GACATCGAACTGCTGACCCGTTTCGTCTTCCGCCGCGCCCTGAAGCAGCTCGGGCCGTTGCTGAGGGAGCAG 
CGGAGCTTCTACGTCAGTGTCAACGTCACCGGCAAGGACATCGCCGACCCCGGTTTCATCGATTTCGCCATG 
CGCCAGATGGCCAGGGAAAGCGTGCGCCCGGAACAGGTCGCGCTGGAACTGACCGAGCGCACCACCGAGGCC 
CAGGGCTGCCTGCTGGCCGGGATGAACCGCCTGCGCGAACTCGGCCTGAAGATCTACGTGGACGATTTCGGC 
ACCGGTCATTCGAACCTGGTCTACCTGGCCAACCTGCCGGTCGACGCGATCAAGATCGACAAGGTCTTCACC 
CAGTCCATCGGCGACAGCAGCGCCGTCGAACTGATCTTCGACAAGCTCTGCTCGATGGCCGAGCACCTGGAG 
ATCGGCGTGGTCGTCGAAGGGATCGAGACACAGGCCCAGGCCGACCACGTGCTGCGCCGCTCGCCCGAGGCC 
CTCGGCCAGGGCTGGCATTTCGGCAAGGCACTGCCGCTGGAGGCCTTCCTCGGCTACTACCGGAACCAGCCG 
ACGGGCCGCTAG