ViewGene
Locus Name:
GeneID:
Location:

GeneID:7423
TrivialName: PA14_66875
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66875
PAO1 Ortholog Locus:PA5060
Sequence Length:930
Protein Length:309
Start: 5973071
Stop: 5972142
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
GeneID6843 (PA14_66870) replaced by 7423 (PA14_66875). Homology: PA5060 [gene=phaF] [prot=polyhydroxyalkanoate synthesis protein PhaF], Length = 309, Score = 577 bits (1486), Expect = e-166, Identities = 304/309 (98%), Positives = 305/309 (98%).
Sequence:
atggctggcaagaagaagagcgaaaaagagtccagttggatcggcgagatcgagaaatactcgcggcagatc
tggctggctggtctgggggcctactcgaaggtcagcaaggacggcagcaagctgttcgagaccttggtgaaa
gacggcgagaaggctgaaaaagaagcgaagtccgatgtggacgcgcaggtcggtgcggcgaaggcttccgcc
cgctctgcgaagagcaaggttgacgaggttcgggatcgtgcgcttggcaagtggagcgagctcgaggaagct
ttcgacaagcgcctgaacagcgccatctcgcgtctcggcgtgccgagccgcaacgaggtgaaggagctgcac
ggcaaggtcgatacgctgaccaggcagatcgagaaactcaccggcgtcagcgtcaagccggcggcgaaggca
gcggccaagcctgcggcgaaaccggctgccaagcccgcggcgaaaaccgcagcggccaagccggcagctaaa
ccggcagccaaggccgccgccaagcctgcggcgaaacccgcggcgaaaaaacctgcagcgaagaccgcggcc
gccaagccggcagccaagcccgccgccaaaccggctgcgaaggccgccgcgaaaccggcggccaagccggca
gccaaggctgcggcgaagcctgctgcgaaacctgccgcagccaagcccgccgcgaagccggcagccaagccg
gccgctgcgaccgccgccaagcccgcggcgaagcctgccgccaagccggctgcgaaaaagcctgcggcgaag
aagccggccgccaagcccgccgcggcgaaaccggccgctcccgccgcgtcttcgagcgcgcccgctgccccc
gccgccacaccggctgccagcgctccggcagcgaacgctccggcgacgccgagcagccagggctga
Translation:
MAGKKKSEKESSWIGEIEKYSRQIWLAGLGAYSKVSKDGSKLFETLVKDGEKAEKEAKSDVDAQVGAAKASA
RSAKSKVDEVRDRALGKWSELEEAFDKRLNSAISRLGVPSRNEVKELHGKVDTLTRQIEKLTGVSVKPAAKA
AAKPAAKPAAKPAAKTAAAKPAAKPAAKAAAKPAAKPAAKKPAAKTAAAKPAAKPAAKPAAKAAAKPAAKPA
AKAAAKPAAKPAAAKPAAKPAAKPAAATAAKPAAKPAAKPAAKKPAAKKPAAKPAAAKPAAPAASSSAPAAP
AATPAASAPAANAPATPSSQG*
AnnotationID:7342GeneID:7423
AnnotatorUID: danlee
Modification Date/Time: 2006-03-13 12:12:20
Gene Name:phaF
Confidence Code:2
GeneProduct:polyhydroxyalkanoate synthesis protein PhaF
Cell Localization:()
Synonyms:PA5060
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam05597
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|9951352|gb|AAG08445.1|  polyhydroxyalkanoate synthesis protein PhaF [Pseudomonas aeruginosa 
PAO1]
 gi|15600253|ref|NP_253747.1|  polyhydroxyalkanoate synthesis protein PhaF [Pseudomonas aeruginosa 
PAO1]
 gi|84317693|ref|ZP_00966131.1|  COG3937: Uncharacterized conserved protein [Pseudomonas aeruginosa 
C3719]
Length=309

 Score =  577 bits (1486),  Expect = 3e-163
 Identities = 304/309 (98%), Positives = 305/309 (98%), Gaps = 0/309 (0%)

gi|84323853|ref|ZP_00971920.1|  COG3937: Uncharacterized conserved protein [Pseudomonas aeruginosa 
2192]
Length=305

 Score =  565 bits (1455),  Expect = 1e-159
 Identities = 300/309 (97%), Positives = 301/309 (97%), Gaps = 4/309 (1%)






 
Structural Features:
pfam05597, Phasin, Poly(hydroxyalcanoate) granule associated protein (phasin). 
Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as 
intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble 
inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a 
transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed 
to repress expression 
of the phaC1 gene and the phaIF operon..
             CD-Length = 132 residues, 100.0% aligned
             Score =  135 bits (340), Expect = 8e-33






   
Genomic Context:






   
Comment: