ViewGene
Locus Name:
GeneID:
Location:

GeneID:7420
TrivialName: PA14_09195
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09195
PAO1 Ortholog Locus:PA4233
Sequence Length:1389
Protein Length:462
Start: 778276
Stop: 779664
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
GeneID6612 (PA14_09190) replaced by GeneID7420 (PA14_09195). Homology: PA4233 [gene=PA4233] [prot=probable MFS transporter], Length = 462, Score = 894 bits (2310), Expect = 0.0, Identities = 462/462 (100%), Positives = 462/462 (100%)
Sequence:
atgcacgactcacatactgagcggatgagcggtaccgaaacgcgagcggccgtcgggctgtcactggtattc
gccttccgcatgctcggcatgttcatggtcctgccggtgctggccacctacggccaggacctggccggcgcg
accccggcgctgatcggcctggccatcggcgcctatggcctgacccaggcgatcctgcagattcccttcggg
accatttccgaccgcatcggccggcgcccggtgatcgtcgtcgggctgctgatctttgccgccggcgcggcc
ctcgcggccaatgccgactccatctggggggtgatcgccggccgcgtcctgcagggcgccggggcgatctcg
gcggcggtgatggcactgctctccgacctcacccgcgagcaacaccggaccaaggcgatggcgatgatcggc
atgagcatcggcgtctccttcgccgtggccatggtgctcggcccggtgctgacccatctgttcggcctgcat
gggctgttctggttcaccgccgggatggcgctggtcggcctgctgctgatcctgttcttcgtcccacagccg
gaccacatgacccagcaccgcgaatccagcgtggcgcgccaggccctgctgccgaccctgaagcacggcgac
ctgctgcgcctggacgccggcatcctgatcctccacgccatcctcatggccagcttcgtcgccttgccgctg
gcgctggtgcacgagggtggcctgcccaaggagcagcactggtgggtctacctgaccgcgctgttggtcggt
ttcttcggcatggtgccgttcatcatctacgccgagaagaagcgtcgcatgaagcgcgtgctgaccggcgcg
gtggcgaccctgctggcctgcgaactgttcttcctggtcttcggtcacagcctggccatgctggtggtcggc
acggtggtgttcttcactgccttcaacctgctcgaagcctcgctgccgtcgctggtcagcaaggtctcgccg
gccggcggcaagggcacggcgatgggggtgtattccaccagccagttcctcggtgcggcgctgggcggcatc
ctcggcggctggatgttccagcacggcgggctgagcatggtgttcatcggatgcgcggtgctcgctgccctc
tggctggcgattgctgttaccatgcgcgaaccgccttatgtgaccagcattcgcctgccgctcgcgcccgcc
gcgctgcaggacgcggtgctggtccagcgattcagggcgttgcccggtgtggcagacgccgtggtggtggcc
gaggaggccgccgcctatgtcaaagtggatacccaacaagtggatcgcaccgccctcgagcgcctggcccag
gccgcgccgggcggatgctga
Translation:
MHDSHTERMSGTETRAAVGLSLVFAFRMLGMFMVLPVLATYGQDLAGATPALIGLAIGAYGLTQAILQIPFG
TISDRIGRRPVIVVGLLIFAAGAALAANADSIWGVIAGRVLQGAGAISAAVMALLSDLTREQHRTKAMAMIG
MSIGVSFAVAMVLGPVLTHLFGLHGLFWFTAGMALVGLLLILFFVPQPDHMTQHRESSVARQALLPTLKHGD
LLRLDAGILILHAILMASFVALPLALVHEGGLPKEQHWWVYLTALLVGFFGMVPFIIYAEKKRRMKRVLTGA
VATLLACELFFLVFGHSLAMLVVGTVVFFTAFNLLEASLPSLVSKVSPAGGKGTAMGVYSTSQFLGAALGGI
LGGWMFQHGGLSMVFIGCAVLAALWLAIAVTMREPPYVTSIRLPLAPAALQDAVLVQRFRALPGVADAVVVA
EEAAAYVKVDTQQVDRTALERLAQAAPGGC*
AnnotationID:7339GeneID:7420
AnnotatorUID: danlee
Modification Date/Time: 2006-03-11 17:05:52
Gene Name:
Confidence Code:3
GeneProduct:probable major facilitator superfamily (MFS) transporter
Cell Localization:()
Synonyms:PA4233, yajR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:probable MFS transporter
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|9950449|gb|AAG07621.1|  probable MFS transporter [Pseudomonas aeruginosa PAO1]
 gi|15599429|ref|NP_252923.1|  probable MFS transporter [Pseudomonas aeruginosa PAO1]
Length=462

 Score =  894 bits (2310),  Expect = 0.0
 Identities = 462/462 (100%), Positives = 462/462 (100%), Gaps = 0/462 (0%)

gi|84318942|ref|ZP_00967354.1|  COG0477: Permeases of the major facilitator superfamily [Pseudomonas 
aeruginosa C3719]
Length=454

 Score =  874 bits (2257),  Expect = 0.0
 Identities = 453/454 (99%), Positives = 453/454 (99%), Gaps = 0/454 (0%)
gi|68347153|gb|AAY94759.1|  major facilitator family transporter [Pseudomonas fluorescens 
Pf-5]
 gi|70732854|ref|YP_262621.1|  major facilitator family transporter [Pseudomonas fluorescens 
Pf-5]
Length=464

 Score =  719 bits (1855),  Expect = 0.0
 Identities = 363/459 (79%), Positives = 405/459 (88%), Gaps = 0/459 (0%)

gi|77385274|gb|ABA76787.1|  General substrate transporter [Pseudomonas fluorescens PfO-1]
 gi|77461271|ref|YP_350778.1|  General substrate transporter [Pseudomonas fluorescens PfO-1]
Length=465

 Score =  714 bits (1843),  Expect = 0.0
 Identities = 359/454 (79%), Positives = 404/454 (88%), Gaps = 0/454 (0%)







 
Structural Features:
COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].
             CD-Length = 394 residues,  86.8% aligned
             Score = 82.6 bits (204), Expect = 1e-16






   
Genomic Context:






   
Comment:
GeneID6612 (PA14_09190) replaced by GeneID7420 (PA14_09195).