ViewGene
Locus Name:
GeneID:
Location:

GeneID:741
TrivialName: PA14_03130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03130
PAO1 Ortholog Locus:PA0254
Sequence Length:1491
Protein Length:496
Start: 276019
Stop: 274529
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03643.1|AE004463_8 (AE004463) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 489/496 (98%), Positives = 490/496 (98%)
Sequence:
ATGAACCGCAGCGCCCTGGATTTCCGCCACTTCATCGACCACCTGCGTCGCCAGGGTGACCTGGTGGACGTG
CACACCGAGGTCGACGCCAACCTGGAGATCGGCGCCATCACCCGCCGGGTCTACGAACGCCGCGCACCCGCC
CCGCTGTTCCACAACATCCGCGACAGCCTGCCCGGCGCGCGGGTACTGGGCGCGCCGGCCGGCCTGCGCGCC
GACAGGGCCCGCGCCCATTCGCGCCTGGCGCTGCATTTCGGCCTGCCGGAACACAGCGGGCCACGGGACATC
GTGGCCACGCTGCGCGCCGCGATGCGCGCGGAACCGATCGCGCCGCGCCGGCTGGAGCGCGGGCCGGTGCAG
GAAAACGTCTGGCTCGGCGAGCAGGTGGACCTGACCCGCTTCCCGGTCCCCTTGCTCCATGAGCAGGACGGC
GGCCGCTATTTCGGCACCTACGGTTTCCACGTGGTACAGACGCCGGACGGCAGTTGGGACAGCTGGTCGGTG
GGCCGGCTGATGCTGGTGGACCGCAACACCCTGGCGGGTCCGACCATTCCCACCCAGCACATCGGCATCATC
CGCGAGCAGTGGCGCCGCCAGGGCAAGCCAACGCCCTGGGCGATGGCCCTCGGCGCACCGCCGGCGGCACTC
GCGGCGGCCGGTATGCCGTTGCCGGAGGGGGTCAGCGAAGCCGGCTACGTAGGCGCCCTGGTCGGCGAGCCG
GTGGAGGTGGTGCGCACGCAGACCAACGGCCTGTGGGTTCCGGCCAATGCCGAGATCGTCCTGGAGGGCGAG
ATCAGCCTCGACGAAACCGCACTGGAAGGCCCGATGGGCGAATACCACGGCTATTCCTTCCCCACCGGCAAG
CCGCAGCCGCTGTTCCACGTCCATGCGCTGAGCTTCCGCGACCAGCCGATCCTGCCGATCTGCGTCGCCGGC
ACGCCACCGGAGGAAAACCACACCATCTGGGGCACCATGATTTCCGCGCAACTGCTGGACGTGGCGCAGAAC
GCCGGACTGCCGGTGGACATGGCCTGGTGCTCCTACGAGGCGGCGACCTGCTGGGCCGTGCTGTCGATCGAC
GTGCAGCGCCTGGCGGCCCTGGGCACCGACGCCGCGGCCTTCGCCGCACGGGTCGCCGAGACCGTCTTCGGC
TCGCATGCCGGGCACCTGGTGCCGAAGCTGATCCTGGTCGGCAACGACATCGACGTCACCGAGATCGACCAG
GTGGTATGGGCGCTGGCGACCCGCGCGCATCCGCTGCACGACCATTTCGCCTTCCCGCAGATCCGTGACTTC
CCGATGGTTCCCTACCTCGATGCCGAGGACAAGGCACGAGGCAGCGGCGGTCGGCTGGTGATCAACTGCCTG
TACCCGGAACAGTTCGCCGGGCAAATGCGTGCCGCTACGGCGTCGTTCCGCCACGCCTATCCGACGGCGCTG
CGCAGGCGAGTCGAAGAACGCTGGAGCGACTACGGATTCGCCGACGCCTGA
Translation:
MNRSALDFRHFIDHLRRQGDLVDVHTEVDANLEIGAITRRVYERRAPAPLFHNIRDSLPGARVLGAPAGLRA
DRARAHSRLALHFGLPEHSGPRDIVATLRAAMRAEPIAPRRLERGPVQENVWLGEQVDLTRFPVPLLHEQDG
GRYFGTYGFHVVQTPDGSWDSWSVGRLMLVDRNTLAGPTIPTQHIGIIREQWRRQGKPTPWAMALGAPPAAL
AAAGMPLPEGVSEAGYVGALVGEPVEVVRTQTNGLWVPANAEIVLEGEISLDETALEGPMGEYHGYSFPTGK
PQPLFHVHALSFRDQPILPICVAGTPPEENHTIWGTMISAQLLDVAQNAGLPVDMAWCSYEAATCWAVLSID
VQRLAALGTDAAAFAARVAETVFGSHAGHLVPKLILVGNDIDVTEIDQVVWALATRAHPLHDHFAFPQIRDF
PMVPYLDAEDKARGSGGRLVINCLYPEQFAGQMRAATASFRHAYPTALRRRVEERWSDYGFADA*
AnnotationID:750GeneID:741
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 05:05:50
Gene Name:
Confidence Code:3
GeneProduct:putative 3-polyprenyl-4-hydroxybenzoate decarboxylase
Cell Localization:()
Synonyms:PA0254
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0043,pfam01977
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0043, UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase 
and related decarboxylases 
[Coenzyme metabolism]
CD-Length = 477 residues, 100.0% aligned
Score =  441 bits (1135), Expect = 1e-124
Identities = 170/496 (34%), Positives = 244/496 (49%), Gaps = 22/496 (4%)

pfam01977, UbiD, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase.
CD-Length = 408 residues, 100.0% aligned
Score =  276 bits (708), Expect = 4e-75
Identities = 136/424 (32%), Positives = 201/424 (47%), Gaps = 18/424 (4%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1485




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18627




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33611




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:741_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:741
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1291
                           PA0254_tr
                           translation of PA0254
                           496
                           98.58
                           98.79
                           0
                           2600.0
     

     
     
48729
                           gb|AAG03643.1|AE004463_8
                           (AE004463) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           496
                           98.58
                           98.79
                           0
                           2600.0
     

     






      

          
GC ORFID: 43743How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0254Glimmer Score: 

          
Start: 6077360Stop: 6075870

          
Length: 1491


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0254 translation of PA0254Homolog Bit Score 1006.0

          
Other Homologs:  t_PA0254 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCGCAGCGCCCTGGATTTCCGCCACTTCATCGACCACCTGCGTCGCCAGGGTGACCTGGTGGACGTG 
CACACCGAGGTCGACGCCAACCTGGAGATCGGCGCCATCACCCGCCGGGTCTACGAACGCCGCGCACCCGCC 
CCGCTGTTCCACAACATCCGCGACAGCCTGCCCGGCGCGCGGGTACTGGGCGCGCCGGCCGGCCTGCGCGCC 
GACAGGGCCCGCGCCCATTCGCGCCTGGCGCTGCATTTCGGCCTGCCGGAACACAGCGGGCCACGGGACATC 
GTGGCCACGCTGCGCGCCGCGATGCGCGCGGAACCGATCGCGCCGCGCCGGCTGGAGCGCGGGCCGGTGCAG 
GAAAACGTCTGGCTCGGCGAGCAGGTGGACCTGACCCGCTTCCCGGTCCCCTTGCTCCATGAGCAGGACGGC 
GGCCGCTATTTCGGCACCTACGGTTTCCACGTGGTACAGACGCCGGACGGCAGTTGGGACAGCTGGTCGGTG 
GGCCGGCTGATGCTGGTGGACCGCAACACCCTGGCGGGTCCGACCATTCCCACCCAGCACATCGGCATCATC 
CGCGAGCAGTGGCGCCGCCAGGGCAAGCCAACGCCCTGGGCGATGGCCCTCGGCGCACCGCCGGCGGCACTC 
GCGGCGGCCGGTATGCCGTTGCCGGAGGGGGTCAGCGAAGCCGGCTACGTAGGCGCCCTGGTCGGCGAGCCG 
GTGGAGGTGGTGCGCACGCAGACCAACGGCCTGTGGGTTCCGGCCAATGCCGAGATCGTCCTGGAGGGCGAG 
ATCAGCCTCGACGAAACCGCACTGGAAGGCCCGATGGGCGAATACCACGGCTATTCCTTCCCCACCGGCAAG 
CCGCAGCCGCTGTTCCACGTCCATGCGCTGAGCTTCCGCGACCAGCCGATCCTGCCGATCTGCGTCGCCGGC 
ACGCCACCGGAGGAAAACCACACCATCTGGGGCACCATGATTTCCGCGCAACTGCTGGACGTGGCGCAGAAC 
GCCGGACTGCCGGTGGACATGGCCTGGTGCTCCTACGAGGCGGCGACCTGCTGGGCCGTGCTGTCGATCGAC 
GTGCAGCGCCTGGCGGCCCTGGGCACCGACGCCGCGGCCTTCGCCGCACGGGTCGCCGAGACCGTCTTCGGC 
TCGCATGCCGGGCACCTGGTGCCGAAGCTGATCCTGGTCGGCAACGACATCGACGTCACCGAGATCGACCAG 
GTGGTATGGGCGCTGGCGACCCGCGCGCATCCGCTGCACGACCATTTCGCCTTCCCGCAGATCCGTGACTTC 
CCGATGGTTCCCTACCTCGATGCCGAGGACAAGGCACGAGGCAGCGGCGGTCGGCTGGTGATCAACTGCCTG 
TACCCGGAACAGTTCGCCGGGCAAATGCGTGCCGCTACGGCGTCGTTCCGCCACGCCTATCCGACGGCGCTG 
CGCAGGCGAGTCGAAGAACGCTGGAGCGACTACGGATTCGCCGACGCCTGA