ViewGene
Locus Name:
GeneID:
Location:

GeneID:740
TrivialName: PA14_01020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01020
PAO1 Ortholog Locus:PA0084
Sequence Length:1497
Protein Length:498
Start: 99431
Stop: 100927
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03474.1|AE004447_7 (AE004447) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 498/498 (100%), Positives = 498/498 (100%)
Sequence:
ATGGCCGAATTGAGCACCGAGAACCTGGCCCAGGGCCAGACCACCACCGAGCAGACCAGCGAGTTCGCCAGC
CTGCTGCTGCAGGAGTTCAAGCCCAAGACCGAGCGCGCCCGCGAAGCGGTGGAGACCGCCGTGCGGACCCTC
GCCGAGCATGCCCTGGAGCAGACCAGCCTGATCTCCAACGACGCGATCAAGTCGATCGAGTCGATCATCGCG
GCGCTTGACGCCAAGCTCACCGCGCAGGTCAACCTGATCATGCACCACGCCGACTTCCAGCAACTGGAAAGC
GCCTGGCGCGGCCTGCACTACCTGGTCAACAACACCGAGACCGACGAGCAACTGAAGATCCGTGTGCTGAAC
ATCTCCAAGCCGGAGCTGCACAAGACCCTGAAGAAATTCAAGGGCACCACCTGGGACCAGAGCCCGATCTTC
AAGAAGCTCTACGAAGAGGAATACGGCCAGTTCGGCGGCGAGCCCTATGGCTGCCTGGTCGGCGACTACTAC
TTCGACCAGTCGCCGCCGGACGTCGAGCTGCTCGGCGAGATGGCGAAGATCTCCGCCGCCATGCATGCGCCG
TTCATCTCCGCCGCCTCGCCGACGGTGATGGGCATGGGTTCCTGGCAGGAACTGTCCAACCCGCGCGACCTG
ACCAAGATCTTCACCACCCCGGAATACGCCGGTTGGCGTTCGCTGCGCGAGTCCGAGGACTCCCGCTACATC
GGCCTGACCATGCCGCGCTTCCTGGCGCGCCTGCCCTACGGGGCGAAGACCGATCCGGTGGAAGAGTTCGCC
TTCGAGGAAGAAACCGACGGCGCCGACAGCAGCAAGTACGCCTGGGCCAACTCGGCCTACGCGATGGCGGTC
AACATCAACCGCTCCTTCAAGCTCTACGGCTGGTGCTCGCGGATCCGTGGCGTCGAGTCCGGCGGCGAGGTG
CAGGGCCTGCCGGCGCACACCTTCCCCACCGACGACGGCGGCGTGGACATGAAGTGCCCGACCGAGATCGCC
ATTTCCGACCGCCGCGAGGCGGAGCTGGCGAAGAACGGCTTCATGCCGCTGCTGCACAAGAAGAACACCGAC
TTCGCCGCCTTCATCGGCGCGCAGTCGCTGCAGAAACCCGCCGAGTACGACGATCCGGACGCCACCGCCAAC
GCCAACTTGGCGGCGCGCCTGCCCTACCTGTTCGCCACCTGCCGCTTCGCCCATTACCTGAAGTGCATCGTT
CGCGACAAGATCGGTTCCTTCAAGGAGAAGGACGAGATGCAGCGCTGGCTGCAGGACTGGATCCTCAACTAC
GTCGACGGCGACCCGGCCCACTCCACCGAGACCACCAAGGCCCAGCACCCGCTGGCGGCGGCCGAAGTGGTG
GTGGAGGAAGTCGAAGGCAATCCGGGTTACTACAACTCGAAGTTCTTCCTTCGCCCGCACTACCAGCTCGAG
GGACTGACGGTATCGCTACGCCTGGTATCCAAGCTGCCTTCGGCCAAAGAGGCCTGA
Translation:
MAELSTENLAQGQTTTEQTSEFASLLLQEFKPKTERAREAVETAVRTLAEHALEQTSLISNDAIKSIESIIA
ALDAKLTAQVNLIMHHADFQQLESAWRGLHYLVNNTETDEQLKIRVLNISKPELHKTLKKFKGTTWDQSPIF
KKLYEEEYGQFGGEPYGCLVGDYYFDQSPPDVELLGEMAKISAAMHAPFISAASPTVMGMGSWQELSNPRDL
TKIFTTPEYAGWRSLRESEDSRYIGLTMPRFLARLPYGAKTDPVEEFAFEEETDGADSSKYAWANSAYAMAV
NINRSFKLYGWCSRIRGVESGGEVQGLPAHTFPTDDGGVDMKCPTEIAISDRREAELAKNGFMPLLHKKNTD
FAAFIGAQSLQKPAEYDDPDATANANLAARLPYLFATCRFAHYLKCIVRDKIGSFKEKDEMQRWLQDWILNY
VDGDPAHSTETTKAQHPLAAAEVVVEEVEGNPGYYNSKFFLRPHYQLEGLTVSLRLVSKLPSAKEA*
AnnotationID:749GeneID:740
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 18:06:37
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0084
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL19230.1| (AE008707) putative cytoplasmic protein [Salmonella typhimurium
           LT2]
          Length = 502

 Score =  738 bits (1904), Expect = 0.0
 Identities = 350/489 (71%), Positives = 418/489 (85%), Gaps = 1/489 (0%)

>emb|CAC48206.1| (AJ320483) SciI protein [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 497

 Score =  728 bits (1879), Expect = 0.0
 Identities = 348/489 (71%), Positives = 415/489 (84%), Gaps = 6/489 (1%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1483




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18625




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33435




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:740_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:740
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1289
                           PA0084_tr
                           translation of PA0084
                           498
                           99.99
                           99.99
                           0
                           2601.0
     

     
     
48691
                           gb|AAG03474.1|AE004447_7
                           (AE004447) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           498
                           99.99
                           99.99
                           0
                           2601.0
     

     
     
48692
                           emb|CAE31300.1|
                           (BX640439) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           501
                           74.05
                           85.42
                           4
                           1988.0
     

     
     
48693
                           emb|CAE40124.1|
                           (BX640425) conserved hypothetical protein [Bordetella parapertussis]
                           501
                           73.65
                           85.02
                           4
                           1978.0
     

     
     
48694
                           gb|AAM38981.1|
                           (AE012065) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           502
                           71.71
                           84.66
                           9
                           1950.0
     

     






      

          
GC ORFID: 43742How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0084Glimmer Score: 

          
Start: 5900770Stop: 5902266

          
Length: 1497


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0084 translation of PA0084Homolog Bit Score 1006.0

          
Other Homologs:  t_PA2366 (ORF: BLASTX 468.0), t_PA0084 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCGAATTGAGCACCGAGAACCTGGCCCAGGGCCAGACCACCACCGAGCAGACCAGCGAGTTCGCCAGC 
CTGCTGCTGCAGGAGTTCAAGCCCAAGACCGAGCGCGCCCGCGAAGCGGTGGAGACCGCCGTGCGGACCCTC 
GCCGAGCATGCCCTGGAGCAGACCAGCCTGATCTCCAACGACGCGATCAAGTCGATCGAGTCGATCATCGCG 
GCGCTTGACGCCAAGCTCACCGCGCAGGTCAACCTGATCATGCACCACGCCGACTTCCAGCAACTGGAAAGC 
GCCTGGCGCGGCCTGCACTACCTGGTCAACAACACCGAGACCGACGAGCAACTGAAGATCCGTGTGCTGAAC 
ATCTCCAAGCCGGAGCTGCACAAGACCCTGAAGAAATTCAAGGGCACCACCTGGGACCAGAGCCCGATCTTC 
AAGAAGCTCTACGAAGAGGAATACGGCCAGTTCGGCGGCGAGCCCTATGGCTGCCTGGTCGGCGACTACTAC 
TTCGACCAGTCGCCGCCGGACGTCGAGCTGCTCGGCGAGATGGCGAAGATCTCCGCCGCCATGCATGCGCCG 
TTCATCTCCGCCGCCTCGCCGACGGTGATGGGCATGGGTTCCTGGCAGGAACTGTCCAACCCGCGCGACCTG 
ACCAAGATCTTCACCACCCCGGAATACGCCGGTTGGCGTTCGCTGCGCGAGTCCGAGGACTCCCGCTACATC 
GGCCTGACCATGCCGCGCTTCCTGGCGCGCCTGCCCTACGGGGCGAAGACCGATCCGGTGGAAGAGTTCGCC 
TTCGAGGAAGAAACCGACGGCGCCGACAGCAGCAAGTACGCCTGGGCCAACTCGGCCTACGCGATGGCGGTC 
AACATCAACCGCTCCTTCAAGCTCTACGGCTGGTGCTCGCGGATCCGTGGCGTCGAGTCCGGCGGCGAGGTG 
CAGGGCCTGCCGGCGCACACCTTCCCCACCGACGACGGCGGCGTGGACATGAAGTGCCCGACCGAGATCGCC 
ATTTCCGACCGCCGCGAGGCGGAGCTGGCGAAGAACGGCTTCATGCCGCTGCTGCACAAGAAGAACACCGAC 
TTCGCCGCCTTCATCGGCGCGCAGTCGCTGCAGAAACCCGCCGAGTACGACGATCCGGACGCCACCGCCAAC 
GCCAACTTGGCGGCGCGCCTGCCCTACCTGTTCGCCACCTGCCGCTTCGCCCATTACCTGAAGTGCATCGTT 
CGCGACAAGATCGGTTCCTTCAAGGAGAAGGACGAGATGCAGCGCTGGCTGCAGGACTGGATCCTCAACTAC 
GTCGACGGCGACCCGGCCCACTCCACCGAGACCACCAAGGCCCAGCACCCGCTGGCGGCGGCCGAAGTGGTG 
GTGGAGGAAGTCGAAGGCAATCCGGGTTACTACAACTCGAAGTTCTTCCTTCGCCCGCACTACCAGCTCGAG 
GGACTGACGGTATCGCTACGCCTGGTATCCAAGCTGCCTTCGGCCAAAGAGGCCTGA