ViewGene
Locus Name:
GeneID:
Location:

GeneID:739
TrivialName: PA14_69150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69150
PAO1 Ortholog Locus:PA5237
Sequence Length:1467
Protein Length:488
Start: 6168940
Stop: 6167474
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08622.1|AE004936_5 (AE004936) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 488/488 (100%), Positives = 488/488 (100%)
Sequence:
ATGACGTTCAAGGATCTCCGCGATTTCATCGCCCAGCTGGAGCAGCGCGGTGCGTTGAAGCGCATCCAGGTG
CCGATTTCCCCCGTGCTCGAGATGACCGAGGTGTGCGACCGCACGTTGCGCGCCAAGGGCCCGGCATTGCTG
TTCGAAAAGCCGACCGGCTTCGACATGCCGGTACTCGGCAACCTGTTCGGTACGCCGGAGCGCGTGGCGCTG
GGCATGGGCGCCGAGGACGTCGGCGCGCTGCGCGAGATCGGCAAGCTGCTGGCGCAACTCAAGGAGCCCGAG
CCGCCGAAGGGTCTCAAGGACGCCTGGGCCAAGCTGCCGATGTACAGGAAGGTCCTGTCCATGGCGCCGAAG
GTGCTCAAGGACGCCCCCTGCCAGGAAGTGGTCGAGGAGGGCGAGGATGTCGACCTCGGCCGGCTGCCGGTC
CAGACCTGCTGGCCGGGCGATGTCGGGCCGCTGATCACCTGGGGCCTGACCGTTACCCGCGGGCCGAACAAG
GAACGGCAGAACCTGGGCATCTACCGCCAGCAGGTGATCGGCCGCAACAAGGTGATCATGCGCTGGCTCAGC
CATCGCGGCGGCGCACTGGACTACCGCGAGTGGTGCCAGAAGCATCCGGGCCAGCCCTATCCGGTAGCCGTG
GCGCTGGGCGCCGATCCGGCGACCATCCTCGGTGCGGTGACGCCGGTGCCGGACACCCTTTCCGAATACGCT
TTCGCCGGCCTGTTGCGCGGGCATCGTACCGAGCTGGTCAAGTGTCGCGGCAGCGACTTGCAGGTGCCGGCC
AGCGCCGAGATCGTCCTCGAAGGGGTGATCCACCCCGGCGAGATGGCCGACGAAGGTCCCTATGGCGATCAC
ACCGGCTACTACAACGAGGTCGATCGCTTCCCGGTGTTCACCGTCGAGCGCGTCACCCGCCGGCAGAAACCG
ATCTACCACAGCACCTACACCGGGCGTCCGCCGGACGAGCCGGCGATCCTCGGGGTGGCACTGAACGAAGTG
TTCGTGCCGATCCTGCAGAAGCAGTTCCCGGAAATCGTCGATTTCTACCTGCCGCCGGAAGGTTGTTCCTAC
CGGATGGCGGTGGTGACCATGAAGAAGCAGTACCCAGGGCACGCCAAGCGCGTGATGCTCGGGGTCTGGTCG
TTCCTGCGGCAGTTCATGTACACCAAGTTCGTCATCGTCACCGACGATGACATCGATGCGCGCGACTGGAAC
GATGTGATCTGGGCCATCACCACGCGGATGGACCCCAAGCGCGACACGGTGATGATCGACAACACGCCCATC
GACTACCTCGACTTCGCCTCGCCGGTCTCCGGCCTCGGCTCGAAGATGGGGCTTGATGCCACCCACAAGTGG
CCGGGCGAGACCAGCCGCGAATGGGGGCGCGCCATCGTCAAGGACGAAGCGGTGACACGGCGCATCGACGCG
CTCTGGTCGAGCCTCGGGATCGACTGA
Translation:
MTFKDLRDFIAQLEQRGALKRIQVPISPVLEMTEVCDRTLRAKGPALLFEKPTGFDMPVLGNLFGTPERVAL
GMGAEDVGALREIGKLLAQLKEPEPPKGLKDAWAKLPMYRKVLSMAPKVLKDAPCQEVVEEGEDVDLGRLPV
QTCWPGDVGPLITWGLTVTRGPNKERQNLGIYRQQVIGRNKVIMRWLSHRGGALDYREWCQKHPGQPYPVAV
ALGADPATILGAVTPVPDTLSEYAFAGLLRGHRTELVKCRGSDLQVPASAEIVLEGVIHPGEMADEGPYGDH
TGYYNEVDRFPVFTVERVTRRQKPIYHSTYTGRPPDEPAILGVALNEVFVPILQKQFPEIVDFYLPPEGCSY
RMAVVTMKKQYPGHAKRVMLGVWSFLRQFMYTKFVIVTDDDIDARDWNDVIWAITTRMDPKRDTVMIDNTPI
DYLDFASPVSGLGSKMGLDATHKWPGETSREWGRAIVKDEAVTRRIDALWSSLGID*
AnnotationID:748GeneID:739
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 06:06:46
Gene Name:
Confidence Code:3
GeneProduct:putative 3-octaprenyl-4-hydroxybenzoate carboxylyase
Cell Localization:()
Synonyms:ubiD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:putative oxidoreductase
Functional Category Confidence Code:5
COGs:pfam01977
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58667.1| (AE016875) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 488

 Score =  922 bits (2383), Expect = 0.0
 Identities = 437/488 (89%), Positives = 467/488 (95%)

>gb|AAP18844.1| (AE016990) putative oxidoreductase [Shigella flexneri 2a str.
           2457T]
          Length = 497

 Score =  803 bits (2074), Expect = 0.0
 Identities = 377/487 (77%), Positives = 426/487 (87%)

>gb|AAN45354.1|AE015398_9 (AE015398) putative oxidoreductase [Shigella flexneri 2a str. 301]
          Length = 497

 Score =  801 bits (2070), Expect = 0.0
 Identities = 376/487 (77%), Positives = 425/487 (87%)






 
Structural Features:
pfam01977, UbiD, 3-octaprenyl-4-hydroxybenzoate carboxylyase.
CD-Length = 408 residues, 100.0% aligned
Score =  469 bits (1209), Expect = 3e-133
Identities = 195/425 (45%), Positives = 258/425 (60%), Gaps = 17/425 (4%)






   
Genomic Context:






   
Comment:
other possible gene name: yigC


















    ReferenceID:1481




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18623




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34854




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:739_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:739
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1288
                           PA5237_tr
                           translation of PA5237
                           488
                           99.99
                           99.99
                           0
                           2601.0
     

     
     
48634
                           gb|AAG08622.1|AE004936_5
                           (AE004936) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           488
                           99.99
                           99.99
                           0
                           2601.0
     

     
     
48636
                           gb|AAO58667.1|
                           (AE016875) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Pseudomonas syringae pv. tomato str. DC3000]
                           488
                           89.54
                           95.69
                           0
                           2383.0
     

     
     
48635
                           gb|AAN70778.1|AE016721_11
                           (AE016793) conserved hypothetical protein TIGR00148 [Pseudomonas putida KT2440]
                           550
                           80.72
                           84.90
                           62
                           2401.0
     

     
     
48637
                           emb|CAD85750.1|
                           (BX321862) Protein of unknown function DUF117 [Nitrosomonas europaea ATCC 19718]
                           488
                           77.45
                           87.50
                           1
                           2087.0
     

     






      

          
GC ORFID: 43741How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5237Glimmer Score: 

          
Start: 5432627Stop: 5431161

          
Length: 1467


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5237 translation of PA5237Homolog Bit Score 1006.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3212 (ORF: BLASTX 928.0), t_PA5237 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGTTCAAGGATCTCCGCGATTTCATCGCCCAGCTGGAGCAGCGCGGTGCGTTGAAGCGCATCCAGGTG 
CCGATTTCCCCCGTGCTCGAGATGACCGAGGTGTGCGACCGCACGTTGCGCGCCAAGGGCCCGGCATTGCTG 
TTCGAAAAGCCGACCGGCTTCGACATGCCGGTACTCGGCAACCTGTTCGGTACGCCGGAGCGCGTGGCGCTG 
GGCATGGGCGCCGAGGACGTCGGCGCGCTGCGCGAGATCGGCAAGCTGCTGGCGCAACTCAAGGAGCCCGAG 
CCGCCGAAGGGTCTCAAGGACGCCTGGGCCAAGCTGCCGATGTACAGGAAGGTCCTGTCCATGGCGCCGAAG 
GTGCTCAAGGACGCCCCCTGCCAGGAAGTGGTCGAGGAGGGCGAGGATGTCGACCTCGGCCGGCTGCCGGTC 
CAGACCTGCTGGCCGGGCGATGTCGGGCCGCTGATCACCTGGGGCCTGACCGTTACCCGCGGGCCGAACAAG 
GAACGGCAGAACCTGGGCATCTACCGCCAGCAGGTGATCGGCCGCAACAAGGTGATCATGCGCTGGCTCAGC 
CATCGCGGCGGCGCACTGGACTACCGCGAGTGGTGCCAGAAGCATCCGGGCCAGCCCTATCCGGTAGCCGTG 
GCGCTGGGCGCCGATCCGGCGACCATCCTCGGTGCGGTGACGCCGGTGCCGGACACCCTTTCCGAATACGCT 
TTCGCCGGCCTGTTGCGCGGGCATCGTACCGAGCTGGTCAAGTGTCGCGGCAGCGACTTGCAGGTGCCGGCC 
AGCGCCGAGATCGTCCTCGAAGGGGTGATCCACCCCGGCGAGATGGCCGACGAAGGTCCCTATGGCGATCAC 
ACCGGCTACTACAACGAGGTCGATCGCTTCCCGGTGTTCACCGTCGAGCGCGTCACCCGCCGGCAGAAACCG 
ATCTACCACAGCACCTACACCGGGCGTCCGCCGGACGAGCCGGCGATCCTCGGGGTGGCACTGAACGAAGTG 
TTCGTGCCGATCCTGCAGAAGCAGTTCCCGGAAATCGTCGATTTCTACCTGCCGCCGGAAGGTTGTTCCTAC 
CGGATGGCGGTGGTGACCATGAAGAAGCAGTACCCAGGGCACGCCAAGCGCGTGATGCTCGGGGTCTGGTCG 
TTCCTGCGGCAGTTCATGTACACCAAGTTCGTCATCGTCACCGACGATGACATCGATGCGCGCGACTGGAAC 
GATGTGATCTGGGCCATCACCACGCGGATGGACCCCAAGCGCGACACGGTGATGATCGACAACACGCCCATC 
GACTACCTCGACTTCGCCTCGCCGGTCTCCGGCCTCGGCTCGAAGATGGGGCTTGATGCCACCCACAAGTGG 
CCGGGCGAGACCAGCCGCGAATGGGGGCGCGCCATCGTCAAGGACGAAGCGGTGACACGGCGCATCGACGCG 
CTCTGGTCGAGCCTCGGGATCGACTGA