ViewGene

Locus Name:
GeneID:
Location:

GeneID:738
TrivialName: PA14_67830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67830
PAO1 Ortholog Locus:PA5136
Sequence Length:1482
Protein Length:493
Start: 6056593
Stop: 6058074
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08521.1|AE004926_11 (AE004926) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 490/493 (99%), Positives = 492/493 (99%)
Sequence:
ATGGCCCGCCCTTCCCCTCCCATGCCCCTGCTCGCCGCCGCCCTGCTGGTCGCTGGCGCGATTCCCCTCGGT
TTCATCTGGATCCTCACCAGCGCCAAGTTCGAGATAGGCGGCGCCAGCCCCGGCGAGAGCACCGTCGGCAAG
GTCGAGAACATCGACCAGCGCGCCATGGAGCAATTCTGCACCGGCGTGCGGGCGACGCCCGCCGGCACCTGG
CTGGTAGGCCGGCGCGAGGTCGGCCGCGACGAGCAGGCACTGCCCGAGGGCGTCATCGACCTGGACCTGGTG
GCGGCCGCCCAGCCCAGGGAAGAAGAGTCCGAACCCCACCTCTTCAACTTCCTCAACGGCATGCTGCTATCC
GGCGGCGATCCGGAAACCACCTATGTCTCGCGCCTGGGCGCGGACGGCGTGTTCCACGAAGTGGCGCGGCTC
GGCGAGACCGCCTGCCTGGAAGTCACGCCGGACGGTTCCAGCGTCTTCCTGCTCACCGGCCTGCGGCGCCCG
GGCAAGGACAACGGTCAGCGCGAGCAGACAGTGGTGCTGCGCAGCGACGACCAGGGCAAGAGCTGGCGGCGG
CTCGAGGAAGGCTTCATGGCCGAGGCGAATCGACTGGGCTGGGCTCTCGCACCGCGCTTCCACGGCAAGGAC
GAAGTCTGGGTCTGGGGTGATTTCGAATACGGCGGTGCCGATGGCGGCCGGGAACCCGGTCAGCCGAGCGGG
CTGTTCTATTCGCCCGACCGCGGCGCCAGCGTCGAGTCGATCGCCACCTCCGCGCCGCTGCTGGTCGACCTC
GCCTACGCCCGCGAGTTGGCACCGAACGGCGTCAGCTGGGGCGACTACAACGGCAAGCACGGGCAGATCAAG
GCACACGTCGCCCAACTGGACGCGGAGCGCGCCGCGATCTGGGTAAGCCAGACCTTCCGCTATGGCCCGCCC
GAAGGGCGCTACCTGACCAGCTCGGTATTGGTCACCACCCAGGCCGAACTGCGCCGCGAGGGCGGACGCTGG
CAGATGGGCGCGATCCGGCGCACCGACGGCGTGGCCGTCGAGCGCCTGGAACAGAACACGGACGGTCGGGTG
ATCGCAGTGCTCGACCACCCGGACGAATCGCGCTCGCTGATCGCCGAGCTCGATCGCGACGCGCTCGAATGG
AAGATCACCGGCAAGCTGCCCAGCCCGTTCTGGCCCCTGCCGTCCAGTTCCGGGCTGCGCGAGTTCTACATG
GGCAGGAATGTGCTGCTGGCCAACACCATGAACCACTACGAAGTGCCGCTGTGGCTGTATCCCGACGAAGAG
CCGGCGAGCGTCTCCGCCAACGCGGTGTACTACTCGGACGACTGGGGATCATCCTGGCGCCGCCTGGACATC
GCCGGCTACCTCGGCGTGCTCGGTTTCGACGAGGCGCACGACCGGGTGTTCTGGGCCCGCGGCAACTGGTAC
GACAGCCGCGACCTCGGCGTCCAGGCCTACGACCTGGACTGA
Translation:
MARPSPPMPLLAAALLVAGAIPLGFIWILTSAKFEIGGASPGESTVGKVENIDQRAMEQFCTGVRATPAGTW
LVGRREVGRDEQALPEGVIDLDLVAAAQPREEESEPHLFNFLNGMLLSGGDPETTYVSRLGADGVFHEVARL
GETACLEVTPDGSSVFLLTGLRRPGKDNGQREQTVVLRSDDQGKSWRRLEEGFMAEANRLGWALAPRFHGKD
EVWVWGDFEYGGADGGREPGQPSGLFYSPDRGASVESIATSAPLLVDLAYARELAPNGVSWGDYNGKHGQIK
AHVAQLDAERAAIWVSQTFRYGPPEGRYLTSSVLVTTQAELRREGGRWQMGAIRRTDGVAVERLEQNTDGRV
IAVLDHPDESRSLIAELDRDALEWKITGKLPSPFWPLPSSSGLREFYMGRNVLLANTMNHYEVPLWLYPDEE
PASVSANAVYYSDDWGSSWRRLDIAGYLGVLGFDEAHDRVFWARGNWYDSRDLGVQAYDLD*
AnnotationID:747GeneID:738
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 12:12:12
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5136
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:1479
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18621
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:738

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1287 PA5136_tr translation of PA5136 493 99.39 99.79 0 2602.0
48633 gb|AAG08521.1|AE004926_11 (AE004926) hypothetical protein PA5136 [Pseudomonas aeruginosa PAO1] 493 99.39 99.79 0 2602.0
GC ORFID: 43740How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5136Glimmer Score:
Start: 5320278Stop: 5321759
Length: 1482
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5136 translation of PA5136Homolog Bit Score 1006.0
Other Homologs: t_PA5136 (ORF: GLIMMER)
GC ORF Sequence
ATGGCCCGCCCTTCCCCTCCCATGCCCCTGCTCGCCGCCGCCCTGCTGGTCGCTGGCGCGATTCCCCTCGGT
TTCATCTGGATCCTCACCAGCGCCAAGTTCGAGATAGGCGGCGCCAGCCCCGGCGAGAGCACCGTCGGCAAG
GTCGAGAACATCGACCAGCGCGCCATGGAGCAATTCTGCACCGGCGTGCGGGCGACGCCCGCCGGCACCTGG
CTGGTAGGCCGGCGCGAGGTCGGCCGCGACGAGCAGGCACTGCCCGAGGGCGTCATCGACCTGGACCTGGTG
GCGGCCGCCCAGCCCAGGGAAGAAGAGTCCGAACCCCACCTCTTCAACTTCCTCAACGGCATGCTGCTATCC
GGCGGCGATCCGGAAACCACCTATGTCTCGCGCCTGGGCGCGGACGGCGTGTTCCACGAAGTGGCGCGGCTC
GGCGAGACCGCCTGCCTGGAAGTCACGCCGGACGGTTCCAGCGTCTTCCTGCTCACCGGCCTGCGGCGCCCG
GGCAAGGACAACGGTCAGCGCGAGCAGACAGTGGTGCTGCGCAGCGACGACCAGGGCAAGAGCTGGCGGCGG
CTCGAGGAAGGCTTCATGGCCGAGGCGAATCGACTGGGCTGGGCTCTCGCACCGCGCTTCCACGGCAAGGAC
GAAGTCTGGGTCTGGGGTGATTTCGAATACGGCGGTGCCGATGGCGGCCGGGAACCCGGTCAGCCGAGCGGG
CTGTTCTATTCGCCCGACCGCGGCGCCAGCGTCGAGTCGATCGCCACCTCCGCGCCGCTGCTGGTCGACCTC
GCCTACGCCCGCGAGTTGGCACCGAACGGCGTCAGCTGGGGCGACTACAACGGCAAGCACGGGCAGATCAAG
GCACACGTCGCCCAACTGGACGCGGAGCGCGCCGCGATCTGGGTAAGCCAGACCTTCCGCTATGGCCCGCCC
GAAGGGCGCTACCTGACCAGCTCGGTATTGGTCACCACCCAGGCCGAACTGCGCCGCGAGGGCGGACGCTGG
CAGATGGGCGCGATCCGGCGCACCGACGGCGTGGCCGTCGAGCGCCTGGAACAGAACACGGACGGTCGGGTG
ATCGCAGTGCTCGACCACCCGGACGAATCGCGCTCGCTGATCGCCGAGCTCGATCGCGACGCGCTCGAATGG
AAGATCACCGGCAAGCTGCCCAGCCCGTTCTGGCCCCTGCCGTCCAGTTCCGGGCTGCGCGAGTTCTACATG
GGCAGGAATGTGCTGCTGGCCAACACCATGAACCACTACGAAGTGCCGCTGTGGCTGTATCCCGACGAAGAG
CCGGCGAGCGTCTCCGCCAACGCGGTGTACTACTCGGACGACTGGGGATCATCCTGGCGCCGCCTGGACATC
GCCGGCTACCTCGGCGTGCTCGGTTTCGACGAGGCGCACGACCGGGTGTTCTGGGCCCGCGGCAACTGGTAC
GACAGCCGCGACCTCGGCGTCCAGGCCTACGACCTGGACTGA