ViewGene
Locus Name:
GeneID:
Location:

GeneID:737
TrivialName: PA14_48680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48680
PAO1 Ortholog Locus:PA1208
Sequence Length:1500
Protein Length:499
Start: 4330281
Stop: 4328782
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04597.1|AE004551_1 (AE004551) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 495/499 (99%), Positives = 497/499 (99%)
Sequence:
ATGCCTGTCGAACACCTGGACGTACTCATCGTCGGCGCCGGATTGTCCGGCGTCGGCGCCGCCTACCACCTG
ATGAAGCATTGCCCCGGCAAGAGCTTCGCCCTGCTCGAAGGGCGCGCGGCGATGGGCGGTACCTGGGACCTG
TTCCGCTACCCCGGCATCCGTTCCGACTCGGACATGTTCACCCTCGGCTACAACTTCAAGCCATGGAGCGAT
CCCAAGGCCATCGCCGACGGTCCGTCGATCCGCCGCTACATCGAGGAGACCGCGCGGGAGAACGGCATCGAC
CGGAAGATCCGCTACCGCCACCGGGTGCTCAGGGCCGACTGGGATTCCGCCAATGCGCGCTGGAACCTCGAC
GTGCAGCGCGGTGACGAGCCCGAGCCGCTGCGCATGACCGCGCAGTTCCTGCTGATGTGCACCGGCTACTAC
CGCTACGAGGCTGGCTATACCCCGGAATTCGTCGGCCGCGAGGACTTCGCCGGGCAGGTCGTCCATCCGCAG
CTGTGGCCCGAGGACCTCGACTACAGCGGCAAGAAGGTGGTGGTGATCGGTAGCGGCGCGACAGCCGTGACC
CTGGTGCCGTCGCTGACCGACAAGGCCGCCCACGTCACCATGTTGCAGCGCTCGCCGTCCTACGTGATCACC
CTGCCGCAGAAGGACGCGATCTCCAATTTCCTTCGCCGCTTCCTTCCGGAAACCTGGGTCTACCGCCAGGCG
CGGGCGCGCAACGTGGCCATGCAGATGGTCTTCTTCATGCTCGCCAGGACCTTCCCCGGCCTGGTCCGCAAG
GTCCTGCTCAAGCTGGCCAGCCTGCAACTGGGCAAGCGCTTCGACATGCGTCACTTCAGCCCGCGCTACAAG
CCGTGGGACGAGCGGGTCTGCGCGGTGCCGGACGGCGACCTGTTCAAGGTGCTGCGCAAGGGCAAGGCGTCG
GTGGTCACCGAGCACATCGACCGCTTCGTCGAGCGGGGCATTCGCCTGAAGACCGGCGAGGTGCTGGAGGCG
GACATCATCGTCACCGCCACCGGTCTCGACCTGGTGATGTTCGGCGGCGCCGAGCTGGCGGTCGACGGCAAG
CCGTTCCAGGTCAACCAGAGCATGGGCTACCGCGGCATCATGCTGCGCGACCTGCCGAACCTGGCGGCGGTG
GTCGGCTATACCAACGCCAGCTGGACGCTCAAGGCGGACCTCTCCAGCGAATACTTCTGCCGCCTGATCAAT
CACATGGACGCCACCGGCATGCGCCAGGTGACCGCCCGCGACAGCACCGGCGACGTGCGCGAGGAGCCCTTC
CTCAACCTCGACTCCGGCTACATCCAGCGCGCCGCCGAGCGCATGCCCAAGCAGGGCGACCGGATGCCCTGG
AAGCTTTACCAGAACTACGTCCTCGACCTGGCGCTGCTGCGCTACGGTAAGGTCGAGGACGGCTACCTGGTG
TTCTCCTCGCCGGCGCCGCAGCGGCAAGCCGGCGGCGCGGCGGTGCAGGCCCTGGGCTGA
Translation:
MPVEHLDVLIVGAGLSGVGAAYHLMKHCPGKSFALLEGRAAMGGTWDLFRYPGIRSDSDMFTLGYNFKPWSD
PKAIADGPSIRRYIEETARENGIDRKIRYRHRVLRADWDSANARWNLDVQRGDEPEPLRMTAQFLLMCTGYY
RYEAGYTPEFVGREDFAGQVVHPQLWPEDLDYSGKKVVVIGSGATAVTLVPSLTDKAAHVTMLQRSPSYVIT
LPQKDAISNFLRRFLPETWVYRQARARNVAMQMVFFMLARTFPGLVRKVLLKLASLQLGKRFDMRHFSPRYK
PWDERVCAVPDGDLFKVLRKGKASVVTEHIDRFVERGIRLKTGEVLEADIIVTATGLDLVMFGGAELAVDGK
PFQVNQSMGYRGIMLRDLPNLAAVVGYTNASWTLKADLSSEYFCRLINHMDATGMRQVTARDSTGDVREEPF
LNLDSGYIQRAAERMPKQGDRMPWKLYQNYVLDLALLRYGKVEDGYLVFSSPAPQRQAGGAAVQALG*
AnnotationID:746GeneID:737
AnnotatorUID: diggins
Modification Date/Time: 2005-02-21 19:07:50
Gene Name:
Confidence Code:3
GeneProduct:putative flavoprotein involved in K+ transport
Cell Localization:()
Synonyms:PA1208
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative monooxygenase, flavin-binding family
Functional Category Confidence Code:5
COGs:COG2072
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK24539.1| (AE005925) monooxygenase, flavin-binding family [Caulobacter
           crescentus CB15]
          Length = 498

 Score =  605 bits (1560), Expect = e-172
 Identities = 293/482 (60%), Positives = 361/482 (74%), Gaps = 4/482 (0%)

>dbj|BAC51207.1| (AP005956) flavin-binding family monooxygenase [Bradyrhizobium
           japonicum USDA 110]
          Length = 488

 Score =  597 bits (1538), Expect = e-170
 Identities = 283/483 (58%), Positives = 355/483 (73%), Gaps = 4/483 (0%)

>gb|AAK48336.1| (AE007188) monooxygenase, flavin-binding family [Mycobacterium
           tuberculosis CDC1551]
          Length = 489

 Score =  549 bits (1414), Expect = e-155
 Identities = 261/486 (53%), Positives = 339/486 (69%), Gaps = 5/486 (1%)






 
Structural Features:
COG2072, TrkA, Predicted flavoprotein involved in K+ transport 
[Inorganic ion transport and metabolism]
CD-Length = 443 residues,  99.3% aligned
Score =  385 bits (990), Expect = e-107
Identities = 167/452 (36%), Positives = 229/452 (50%), Gaps = 16/452 (3%)








   
Genomic Context:






   
Comment:


















    ReferenceID:1477




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18619




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38047




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:737_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:737
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1286
                           PA1208_tr
                           translation of PA1208
                           499
                           99.19
                           99.59
                           0
                           2602.0
     

     
     
48609
                           gb|AAG04597.1|AE004551_1
                           (AE004551) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           499
                           99.19
                           99.59
                           0
                           2602.0
     

     
     
48610
                           gb|AAK24539.1|
                           (AE005925) monooxygenase, flavin-binding family [Caulobacter crescentus CB15]
                           506
                           58.89
                           72.72
                           15
                           1564.0
     

     
     
48611
                           dbj|BAC51207.1|
                           (AP005956) flavin-binding family monooxygenase [Bradyrhizobium japonicum USDA 110]
                           505
                           56.03
                           70.29
                           23
                           1538.0
     

     
     
48614
                           emb|CAD96070.1|
                           (BX248347) MONOOXYGENASE ETHA [Mycobacterium bovis subsp. bovis AF2122/97]
                           502
                           51.99
                           67.52
                           16
                           1414.0
     

     






      

          
GC ORFID: 43739How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1208Glimmer Score: 

          
Start: 623627Stop: 625126

          
Length: 1500


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1208 translation of PA1208Homolog Bit Score 1006.0

          
Other Homologs:  t_PA1208 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTGTCGAACACCTGGACGTACTCATCGTCGGCGCCGGATTGTCCGGCGTCGGCGCCGCCTACCACCTG 
ATGAAGCATTGCCCCGGCAAGAGCTTCGCCCTGCTCGAAGGGCGCGCGGCGATGGGCGGTACCTGGGACCTG 
TTCCGCTACCCCGGCATCCGTTCCGACTCGGACATGTTCACCCTCGGCTACAACTTCAAGCCATGGAGCGAT 
CCCAAGGCCATCGCCGACGGTCCGTCGATCCGCCGCTACATCGAGGAGACCGCGCGGGAGAACGGCATCGAC 
CGGAAGATCCGCTACCGCCACCGGGTGCTCAGGGCCGACTGGGATTCCGCCAATGCGCGCTGGAACCTCGAC 
GTGCAGCGCGGTGACGAGCCCGAGCCGCTGCGCATGACCGCGCAGTTCCTGCTGATGTGCACCGGCTACTAC 
CGCTACGAGGCTGGCTATACCCCGGAATTCGTCGGCCGCGAGGACTTCGCCGGGCAGGTCGTCCATCCGCAG 
CTGTGGCCCGAGGACCTCGACTACAGCGGCAAGAAGGTGGTGGTGATCGGTAGCGGCGCGACAGCCGTGACC 
CTGGTGCCGTCGCTGACCGACAAGGCCGCCCACGTCACCATGTTGCAGCGCTCGCCGTCCTACGTGATCACC 
CTGCCGCAGAAGGACGCGATCTCCAATTTCCTTCGCCGCTTCCTTCCGGAAACCTGGGTCTACCGCCAGGCG 
CGGGCGCGCAACGTGGCCATGCAGATGGTCTTCTTCATGCTCGCCAGGACCTTCCCCGGCCTGGTCCGCAAG 
GTCCTGCTCAAGCTGGCCAGCCTGCAACTGGGCAAGCGCTTCGACATGCGTCACTTCAGCCCGCGCTACAAG 
CCGTGGGACGAGCGGGTCTGCGCGGTGCCGGACGGCGACCTGTTCAAGGTGCTGCGCAAGGGCAAGGCGTCG 
GTGGTCACCGAGCACATCGACCGCTTCGTCGAGCGGGGCATTCGCCTGAAGACCGGCGAGGTGCTGGAGGCG 
GACATCATCGTCACCGCCACCGGTCTCGACCTGGTGATGTTCGGCGGCGCCGAGCTGGCGGTCGACGGCAAG 
CCGTTCCAGGTCAACCAGAGCATGGGCTACCGCGGCATCATGCTGCGCGACCTGCCGAACCTGGCGGCGGTG 
GTCGGCTATACCAACGCCAGCTGGACGCTCAAGGCGGACCTCTCCAGCGAATACTTCTGCCGCCTGATCAAT 
CACATGGACGCCACCGGCATGCGCCAGGTGACCGCCCGCGACAGCACCGGCGACGTGCGCGAGGAGCCCTTC 
CTCAACCTCGACTCCGGCTACATCCAGCGCGCCGCCGAGCGCATGCCCAAGCAGGGCGACCGGATGCCCTGG 
AAGCTTTACCAGAACTACGTCCTCGACCTGGCGCTGCTGCGCTACGGTAAGGTCGAGGACGGCTACCTGGTG 
TTCTCCTCGCCGGCGCCGCAGCGGCAAGCCGGCGGCGCGGCGGTGCAGGCCCTGGGCTGA