ViewGene
Locus Name:
GeneID:
Location:

GeneID:7367
TrivialName: PA14_00925
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00925
PAO1 Ortholog Locus:PA0078
Sequence Length:1350
Protein Length:449
Start: 94045
Stop: 92696
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
GeneID7006 (PA14_00920) replaced by GeneID7367 (PA14_00925). >PA0078 [prot=hypothetical protein], Length = 449, Score = 897 bits (2317), Expect = 0.0, Identities = 449/449 (100%), Positives = 449/449 (100%).
Sequence:
atgcctcccatcgacgatcccttcggcaccccggccggcggcggcaacggaagcccgcccgacgaccgcacc
atgatcatgccgcgtcccggcggccgcgccccggaaccggccggcggcccccgcggcggcgatccctacacg
ccgccgccgatggccagcctggcgccgctgagcggccgcggcgacggcctcaacccgctggagcaggccgcc
ggcccactgctggcgatgctcacccgcctgcgcaacaccatcgcccatccggcgccggccagcctgcgcgcg
caactgctcggctacctgcgccagttcgaggagaaggcacgccaggccggcgtggcgccggacgaagtgatg
ctggcgcgctacgtgctctgcaccgccctcgacgaagcggtgctcagcacgccgtggggcagcaccagcgac
tggggcaagcagagcctgctgatcaccctgcacaacgaggcctggggcggcgagaaggtcttccagttgctc
gaacactgcctgcagaacccgcaccagcgcctgcacctgctggagctgctgtacctgtgcaccagcctcggc
ttcgaaggccgctaccgggtcatgcacgacggccgcagccaactggaggcgctgcgcgagcgcaccgcggcg
gtgatccgcagcacccgcggcgagtacgagcacgaactgtcgccgcactggcgcggcctcagcgtgatgcgc
gaccgcctttcgcaatacctgccgccgtgggtcggtatcgccatcggcctggccttgctgctggccttgctg
ttcggcctgcggatgaagctggccgccgacgccgagccggtgttcaagcgcatccacgccatcggcgagatc
ccggtgcaggccatcgaccgcccagcggtgcagccgcgggtgatcgaacggccacgcctggcgcgcttcctc
gcagacgacatcaaggcccagcgggtggcggtggaggacgccgtcgaccgctcggtggtgaccatccgcggc
gacgagctgttcgccagcgccagcgccagcgtgcgcgacgagttccagccgctgctgctgcgcatcgccgac
gccctgcgcaaggtcaagggccaggtgctggtcaccggccatagcgacaaccggccgatcgccacgctgcgc
tacccgtccaactggaaactgtcccaggcccgcgcccaggaggtcgccgacctgctcggcgcgaccaccggc
gacgccggccgcttcaccgccgaagggcgcagcgacaccgagccggtggcgaccaacgccagcgccgaaggc
cgcgcacgcaaccgccgggtggaaatcaccgtattcgcggagggcgcgcaatga
Translation:
MPPIDDPFGTPAGGGNGSPPDDRTMIMPRPGGRAPEPAGGPRGGDPYTPPPMASLAPLSGRGDGLNPLEQAA
GPLLAMLTRLRNTIAHPAPASLRAQLLGYLRQFEEKARQAGVAPDEVMLARYVLCTALDEAVLSTPWGSTSD
WGKQSLLITLHNEAWGGEKVFQLLEHCLQNPHQRLHLLELLYLCTSLGFEGRYRVMHDGRSQLEALRERTAA
VIRSTRGEYEHELSPHWRGLSVMRDRLSQYLPPWVGIAIGLALLLALLFGLRMKLAADAEPVFKRIHAIGEI
PVQAIDRPAVQPRVIERPRLARFLADDIKAQRVAVEDAVDRSVVTIRGDELFASASASVRDEFQPLLLRIAD
ALRKVKGQVLVTGHSDNRPIATLRYPSNWKLSQARAQEVADLLGATTGDAGRFTAEGRSDTEPVATNASAEG
RARNRRVEITVFAEGAQ*
AnnotationID:7280GeneID:7367
AnnotatorUID: danlee
Modification Date/Time: 2005-11-30 15:03:46
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0078
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3455, COG1360, COG2885
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|70733365|ref|YP_263140.1|  OmpA family protein [Pseudomonas fluorescens Pf-5]
gi|68347664|gb|AAY95270.1|  OmpA family protein [Pseudomonas fluorescens Pf-5]
          Length=441

 Score =  681 bits (1756),  Expect = 0.0
 Identities = 342/449 (76%), Positives = 385/449 (85%), Gaps = 8/449 (1%)

gi|33595424|ref|NP_883067.1|  putative outer membrane protein [Bordetella parapertussis 12822]
gi|33599804|ref|NP_887364.1|  putative outer membrane protein [Bordetella bronchiseptica RB50]
gi|33567401|emb|CAE31314.1|  putative outer membrane protein [Bordetella bronchiseptica RB50]
gi|33565502|emb|CAE40138.1|  putative outer membrane protein [Bordetella parapertussis]
          Length=426

 Score =  366 bits (939),  Expect = 1e-99
 Identities = 199/407 (48%), Positives = 253/407 (62%), Gaps = 5/407 (1%)






 
Structural Features:
COG3455, Uncharacterized protein conserved in bacteria [Function unknown].
             CD-Length = 262 residues,  92.7% aligned
             Score =  235 bits (602), Expect = 6e-63

COG1360, MotB, Flagellar motor protein [Cell motility and secretion].
             CD-Length = 244 residues, only  58.2% aligned
             Score =  130 bits (329), Expect = 3e-31

COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell 
envelope biogenesis, outer membrane].
             CD-Length = 190 residues,  90.5% aligned
             Score = 97.6 bits (242), Expect = 3e-21






   
Genomic Context:






   
Comment: