ViewGene
Locus Name:
GeneID:
Location:

GeneID:736
TrivialName: PA14_37380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37380
PAO1 Ortholog Locus:PA2097
Sequence Length:1476
Protein Length:491
Start: 3328426
Stop: 3326951
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05485.1|AE004637_5 (AE004637) probable flavin-binding monooxygenase [Pseudomonas aeruginosa PAO1]
Identities = 488/491 (99%), Positives = 488/491 (99%)
Sequence:
ATGCACAACGAGTCCCGCCCTGAAGCCCCCTTGCGGGTGCTGGTGGTCGGCGCCGGCTTCGCCGGTCTCGGC
CTGGCGATCCGCCTGCGACAGGCAGGCATCGACGATTACCTGGTCCTGGAAAAGGCCGCCGACGTCGGCGGT
TGCTGGCGGGAAAACCGCTACCCGGGCGCCGCCTGCGACGTCCCCTCGCATCTTTATTCGTTTTCCTTCGAG
CCGAAGGCCGACTGGTCGCGCAAGTTCGCCCCGCAGGCGGAAATCCTCGACTACCTGCGGCATTGCGCGGAC
AAGTACCGTCTGCGCGGGAAGATCCGTTTCCACTGCGAGGTGGAGGAGGCCCGCTTCGACGCCGGCAGCGGC
GAATGGCAGGTGCGCTGCGCCGACGGCCAGACGCTGCGCGCACGGGCCCTGGTCTGCGCCACCGGCCAGTTG
AGCCGGCCGCTGCTGCCGCGCCTGCCCGGCCTGGAGCGCTTCCAGGGTCCGGCGTTCCACTCGGCGAACTGG
GACGCCGAGGTCGAGCTGGCCGGCAAGCGGGTCGCGGTGATCGGCACCGGAGCCAGCGCCATCCAGTTCGTC
CCGCGGATCGCCCCGCAGGTGCAACGCCTGTCGCTGTTCCAGCGCAGCGCGCCCTACGTGATCGCCAAGCCG
GACCGCGCCTACGCCGACTGGGAACGCCGCCTGAAGGCGCGCTGGCCGTGGCTGCAACGTCTGGATCGGGGG
CTCAAGTACCTGCACCACGAATCGCGGATGCTCGCCTTCGCGACCTTCCCGGCGCTGATGAAGGTGATGCGG
CTGAGCTTCCATCGTCACCTGCACCGGCAGATCGCCGATCCGCAACTGCGCGCGCGGCTGGTTCCCGACTAC
CCTCTGGGTTGCAAGCGCATCCTGATCAGCAACGACTATTACCCGGCGCTGGCCAGGAGCAATGTCGAACTG
GTCGACACGGGCATTCGCGAAGTCACCGAAGACGCCGTGGTTGGCCGTGACGGCCGCCGGCACGAGGTCGAC
GCGATCATCTTCGGTACCGGCTTCGCCGCCACCGAGTTCCTCGCCCCGATGCGCATCCTCGGCCTCGACGGA
CGCGACCTGCGGCAGGCCTGGGCGGATGGCGCGGAAGCCTACAAGGGCATCAGCGTCAGCGGCTTCCCCAAC
CTGTTCATCCTTTACGGGCCGAACACCAACCTCGGTCACAACTCCATCGTCTACATGCTGGAAAGCCAGTTC
CCCTACGTGCTCGGCTGCCTGCGCCAGCTCCAGGCGCAGGGCTTGCGCTACCTCGACGTGAAGCCCGAGGTC
CAGCGGCGCTTCAACCTGGAGGTGCAACAGGGGTTGCGCCATACCGTCTGGGAGCGTGGCTGCGACAGCTGG
TACAAGACTGCCGCCGGCAAGAACACCAACAACTGGCCGGGCTACACCTTCGTCTATCGCTGGCGTACGCGC
CGGCCGGAGCTTGCCGACTATGACCTGGCCCGCTGA
Translation:
MHNESRPEAPLRVLVVGAGFAGLGLAIRLRQAGIDDYLVLEKAADVGGCWRENRYPGAACDVPSHLYSFSFE
PKADWSRKFAPQAEILDYLRHCADKYRLRGKIRFHCEVEEARFDAGSGEWQVRCADGQTLRARALVCATGQL
SRPLLPRLPGLERFQGPAFHSANWDAEVELAGKRVAVIGTGASAIQFVPRIAPQVQRLSLFQRSAPYVIAKP
DRAYADWERRLKARWPWLQRLDRGLKYLHHESRMLAFATFPALMKVMRLSFHRHLHRQIADPQLRARLVPDY
PLGCKRILISNDYYPALARSNVELVDTGIREVTEDAVVGRDGRRHEVDAIIFGTGFAATEFLAPMRILGLDG
RDLRQAWADGAEAYKGISVSGFPNLFILYGPNTNLGHNSIVYMLESQFPYVLGCLRQLQAQGLRYLDVKPEV
QRRFNLEVQQGLRHTVWERGCDSWYKTAAGKNTNNWPGYTFVYRWRTRRPELADYDLAR*
AnnotationID:745GeneID:736
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 07:07:30
Gene Name:
Confidence Code:3
GeneProduct:putative flavin-binding monooxygenase
Cell Localization:()
Synonyms:PA2097
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2072,pfam00743
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC36351.2| (AF090329) putative flavin-binding monooxygenase [Pseudomonas
           fluorescens]
          Length = 512

 Score =  489 bits (1260), Expect = e-137
 Identities = 245/477 (51%), Positives = 317/477 (66%), Gaps = 2/477 (0%)

>dbj|BAC71337.1| (AP005035) putative monooxygenase [Streptomyces avermitilis
           MA-4680]
          Length = 520

 Score =  459 bits (1182), Expect = e-128
 Identities = 236/483 (48%), Positives = 313/483 (64%), Gaps = 3/483 (0%)








 
Structural Features:
COG2072, TrkA, Predicted flavoprotein involved in K+ transport 
[Inorganic ion transport and metabolism]
CD-Length = 443 residues,  98.2% aligned
Score =  347 bits (892), Expect = 2e-96
Identities = 157/447 (35%), Positives = 211/447 (47%), Gaps = 17/447 (3%)

pfam00743, FMO-like, Flavin-binding monooxygenase-like.
CD-Length = 532 residues,  90.0% aligned
Score =  185 bits (470), Expect = 1e-47
Identities = 102/482 (21%), Positives = 179/482 (37%), Gaps = 39/482 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1475




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18617




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32611




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:736_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:736
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1284
                           PA2097_tr
                           translation of PA2097
                           491
                           99.38
                           99.38
                           0
                           2603.0
     

     
     
48593
                           gb|AAG05485.1|AE004637_5
                           (AE004637) probable flavin-binding monooxygenase [Pseudomonas aeruginosa PAO1]
                           491
                           99.38
                           99.38
                           0
                           2603.0
     

     
     
48594
                           gb|AAC36351.2|
                           (AF090329) putative flavin-binding monooxygenase [Pseudomonas fluorescens]
                           517
                           48.16
                           62.66
                           31
                           1262.0
     

     
     
1285
                           PA1538_tr
                           translation of PA1538
                           527
                           46.86
                           61.48
                           36
                           1248.0
     

     
     
48595
                           gb|AAG04927.1|AE004582_5
                           (AE004582) probable flavin-containing monooxygenase [Pseudomonas aeruginosa PAO1]
                           527
                           46.86
                           61.48
                           36
                           1248.0
     

     






      

          
GC ORFID: 43738How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2097Glimmer Score: 

          
Start: 1625488Stop: 1626963

          
Length: 1476


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2097 translation of PA2097Homolog Bit Score 1007.0

          
Other Homologs:  t_PA2097 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACAACGAGTCCCGCCCTGAAGCCCCCTTGCGGGTGCTGGTGGTCGGCGCCGGCTTCGCCGGTCTCGGC 
CTGGCGATCCGCCTGCGACAGGCAGGCATCGACGATTACCTGGTCCTGGAAAAGGCCGCCGACGTCGGCGGT 
TGCTGGCGGGAAAACCGCTACCCGGGCGCCGCCTGCGACGTCCCCTCGCATCTTTATTCGTTTTCCTTCGAG 
CCGAAGGCCGACTGGTCGCGCAAGTTCGCCCCGCAGGCGGAAATCCTCGACTACCTGCGGCATTGCGCGGAC 
AAGTACCGTCTGCGCGGGAAGATCCGTTTCCACTGCGAGGTGGAGGAGGCCCGCTTCGACGCCGGCAGCGGC 
GAATGGCAGGTGCGCTGCGCCGACGGCCAGACGCTGCGCGCACGGGCCCTGGTCTGCGCCACCGGCCAGTTG 
AGCCGGCCGCTGCTGCCGCGCCTGCCCGGCCTGGAGCGCTTCCAGGGTCCGGCGTTCCACTCGGCGAACTGG 
GACGCCGAGGTCGAGCTGGCCGGCAAGCGGGTCGCGGTGATCGGCACCGGAGCCAGCGCCATCCAGTTCGTC 
CCGCGGATCGCCCCGCAGGTGCAACGCCTGTCGCTGTTCCAGCGCAGCGCGCCCTACGTGATCGCCAAGCCG 
GACCGCGCCTACGCCGACTGGGAACGCCGCCTGAAGGCGCGCTGGCCGTGGCTGCAACGTCTGGATCGGGGG 
CTCAAGTACCTGCACCACGAATCGCGGATGCTCGCCTTCGCGACCTTCCCGGCGCTGATGAAGGTGATGCGG 
CTGAGCTTCCATCGTCACCTGCACCGGCAGATCGCCGATCCGCAACTGCGCGCGCGGCTGGTTCCCGACTAC 
CCTCTGGGTTGCAAGCGCATCCTGATCAGCAACGACTATTACCCGGCGCTGGCCAGGAGCAATGTCGAACTG 
GTCGACACGGGCATTCGCGAAGTCACCGAAGACGCCGTGGTTGGCCGTGACGGCCGCCGGCACGAGGTCGAC 
GCGATCATCTTCGGTACCGGCTTCGCCGCCACCGAGTTCCTCGCCCCGATGCGCATCCTCGGCCTCGACGGA 
CGCGACCTGCGGCAGGCCTGGGCGGATGGCGCGGAAGCCTACAAGGGCATCAGCGTCAGCGGCTTCCCCAAC 
CTGTTCATCCTTTACGGGCCGAACACCAACCTCGGTCACAACTCCATCGTCTACATGCTGGAAAGCCAGTTC 
CCCTACGTGCTCGGCTGCCTGCGCCAGCTCCAGGCGCAGGGCTTGCGCTACCTCGACGTGAAGCCCGAGGTC 
CAGCGGCGCTTCAACCTGGAGGTGCAACAGGGGTTGCGCCATACCGTCTGGGAGCGTGGCTGCGACAGCTGG 
TACAAGACTGCCGCCGGCAAGAACACCAACAACTGGCCGGGCTACACCTTCGTCTATCGCTGGCGTACGCGC 
CGGCCGGAGCTTGCCGACTATGACCTGGCCCGCTGA