ViewGene
Locus Name:
GeneID:
Location:

GeneID:7353
TrivialName: PA14_58730
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58730
PAO1 Ortholog Locus:PA4525
Sequence Length:540
Protein Length:179
Start: 5234050
Stop: 5233511
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
edited 9-19-05 to truncate 5' end and make it more consistent with other published type IV pilin seuqences.
Sequence:
ATGAAAGCTCAGAAAGGCTTTACCTTGATCGAACTGATGATCGTGGTTGCGATCATCGGTATTCTTGCTGCC
GTCGCTTTGCCGGCATATCAGGATTACACCATTCGTGCTCGCGTGACAGAGGGGGTTGGTCTGGCTGCCAGC
GCCAAGACGCTTATTGGCGATAGCTCTGCCACTGCCGGTGAGCTAGCCGCTTCGGCAAGGGTCTGGAATGCT
CAAGCCGGTAACGCCGGTGCTACCAGTAAGTATGTGACCTCTGTGCGAATTGCAGAGGCGACTGGTGAAATC
ACTGTTACTTTCAATGCCACAAACGTGGGTAATATTCCGGCTGACTCTACCCTGGTATTTACTCCCTATGTG
CAGAATGCTGCCGGTGCCCCGACTCAATTGGGTGCCAGTTATGCTGCCGGTGTGACTGGCTCTATTGACTGG
GGTTGTGCATCGGAATCCAATGCGGTTTCCAGTGGTCCCGACCGCAATATGCCTGCCCTGACTGCAGGTACC
CTGCCGGCTCGTTTCGCTCCGAGCGAATGCCGCTAA
Translation:
MKAQKGFTLIELMIVVAIIGILAAVALPAYQDYTIRARVTEGVGLAASAKTLIGDSSATAGELAASARVWNA
QAGNAGATSKYVTSVRIAEATGEITVTFNATNVGNIPADSTLVFTPYVQNAAGAPTQLGASYAAGVTGSIDW
GCASESNAVSSGPDRNMPALTAGTLPARFAPSECR*
AnnotationID:7209GeneID:7353
AnnotatorUID: danlee
Modification Date/Time: 2006-03-29 14:02:18
Gene Name:pilA
Confidence Code:1
GeneProduct:type IV pilin structural subunit
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|18535594|gb|AAL12242.1|  type IV pilin [Pseudomonas aeruginosa]
Score =  334 bits (856),  Expect = 1e-90
Identities = 172/179 (96%), Positives = 176/179 (98%),
Gaps = 0/179 (0%)

PA4525 [gene=pilA] [prot=type 4 fimbrial precursor PilA] [comment=PA4525]
          Length = 149

 Score = 70.1 bits (170), Expect = 2e-013
 Identities = 52/148 (35%), Positives = 67/148 (45%), Gaps = 12/148 (8%)






 
Structural Features:
pfam00114, Pilin, Pilin (bacterial filament). Proteins with only the short N-terminal methylation site are 
not separated from the noise.
             CD-Length = 145 residues,  83.4% aligned
             Score = 47.2 bits (112), Expect = 1e-06

COG4969, PilA, Tfp pilus assembly protein, major pilin PilA [Cell motility and secretion / Intracellular 
trafficking and secretion].
             CD-Length = 125 residues,  80.8% aligned
             Score = 38.4 bits (89), Expect = 5e-04






   
Genomic Context:






   
Comment:
Homology to PAO1 PilA (PA4525):  Identities = 52/148 (35%), Positives = 67/148 (45%), Gaps = 12/148 (8%)