ViewGene

Locus Name:
GeneID:
Location:

GeneID:735
TrivialName: PA14_09150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09150
PAO1 Ortholog Locus:PA4236
Sequence Length:1449
Protein Length:482
Start: 773110
Stop: 774558
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07624.1|AE004841_2 (AE004841) catalase [Pseudomonas aeruginosa PAO1]
Identities = 482/482 (100%), Positives = 482/482 (100%)
Sequence:
ATGGAAGAGAAGACCCGCCTGACCACTGCCGCTGGCGCACCGGTGGTCGATAACCAGAACGTGCAGACCGCC
GGTCCGCGTGGCCCGATGTTGCTGCAGGACGTGTGGTTCCTCGAGAAGCTCGCCCACTTCGATCGCGAAGTG
ATCCCCGAGCGCCGCATGCATGCGAAAGGCTCCGCGGCCTATGGCACCTTCACCGTCACCCATGACATCACC
CCCTACACCCGGGCGAAGATCTTCTCCCAGGTCGGCAAGAAGACCGATATGTTCCTGCGCTTCTCCACCGTC
GCCGGTGAGCGTGGCGCGGCGGATGCAGAGCGAGACATCCGCGGCTTCTCCATGCGTTTCTACACCGAGCAG
GGCAACTGGGACCTGGTCGGCAACAACACCCCGGTGTTCTATCTGCGCGACCCGCTCAAGTTCCCCGATCTC
AACCACGTGGTGAAGCGTGACCCGCGCACCAACCTGCGCAATGCGACCTTCAAGTGGGACTTTTTCTCTCAC
CTCCCCGAGTCGCTGCATCAGTTGACCATCGACTTCAGCGACCGCGGTCTGCCGAAGAGCTATCGGCACATC
CATGGTTTCGGCAGCCATACCTTCAGCTTCATCAATGCGAACAACGAGCGCTTCTGGGTCAAGTTCCACTTC
AAGACCCAACAGGGCATCGAGAACCTGACCAACGCCGAGGCTGCCGAAGTGATCGCCCAGGACCGCGAGAGT
TCGCAGCGCGACTTGTACGAGAGCATCGAGAAAGGCGACTTCCCGCGCTGGAAGATGTACGTGCAGATCATG
CCCGAGAAGGAAGCGGCCACCTATCGCTACAACCCGTTCGACCTGACCAAGGTCTGGCCCCACGGTGACTAC
CCGTTGATCGAAGTGGGCTTCTTCGAGCTGAACCGTAACCCGGACAACTACTTCGCCGAGGTCGAGCAGGCC
GCTTTCACGCCGGCCAACGTGGTGCCCGGTATCGGTTTCTCGCCGGACAAGATGCTCCAGGGCCGTCTGTTC
TCCTACGGCGACGCCCATCGCTATCGCCTGGGCGTCAACCACCACCAGATCCCGGTGAACGCCGCGCGTTGC
CCGCACCAGGTCTACCACCGCGACGGCGGCATGCGGGTGGACGGCAACAACGCCCATCAGCGCGTCACCTAC
GAGCCGAACAGCTTCAACCAGTGGCAGGAGCAGCCTGACTTCTCCGAGCCGCCGCTGAGCCTGGAGGGCGCG
GCGGACCACTGGAACCACCGGGTGGACGACGACTACTACAGCCAGCCCGCCGCGCTGTTCCATCTGTTCACC
GACGAGCAGAAGCAGCGGCTGTTCGCCAACATCGCCGAAGACATCCGCGATGTACCGGAACAGATCCAGCGT
CGCCAGATCGGCCTGTTCCTCAAGGTCGACCCGGCCTACGGCAAAGGCGTCGCCGACGCCCTCGGCCTGAAG
CTGGACTGA
Translation:
MEEKTRLTTAAGAPVVDNQNVQTAGPRGPMLLQDVWFLEKLAHFDREVIPERRMHAKGSAAYGTFTVTHDIT
PYTRAKIFSQVGKKTDMFLRFSTVAGERGAADAERDIRGFSMRFYTEQGNWDLVGNNTPVFYLRDPLKFPDL
NHVVKRDPRTNLRNATFKWDFFSHLPESLHQLTIDFSDRGLPKSYRHIHGFGSHTFSFINANNERFWVKFHF
KTQQGIENLTNAEAAEVIAQDRESSQRDLYESIEKGDFPRWKMYVQIMPEKEAATYRYNPFDLTKVWPHGDY
PLIEVGFFELNRNPDNYFAEVEQAAFTPANVVPGIGFSPDKMLQGRLFSYGDAHRYRLGVNHHQIPVNAARC
PHQVYHRDGGMRVDGNNAHQRVTYEPNSFNQWQEQPDFSEPPLSLEGAADHWNHRVDDDYYSQPAALFHLFT
DEQKQRLFANIAEDIRDVPEQIQRRQIGLFLKVDPAYGKGVADALGLKLD*
AnnotationID:744GeneID:735
AnnotatorUID: diggins
Modification Date/Time: 2005-04-01 13:01:09
Gene Name:katA
Confidence Code:1
GeneProduct:catalase
Cell Localization:()
Synonyms:catA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00199,cd00328,COG0753
Secondary Functional Category(ies):
EC Number:1.11.1.6
Status:ACTIVE
Pathway:
Homology:
>gb|AAM86532.1|AE013900_1 (AE013900) catalase; hydroperoxidase HPII(III) [Yersinia pestis
           KIM]
          Length = 480

 Score =  818 bits (2112), Expect = 0.0
 Identities = 385/479 (80%), Positives = 427/479 (89%), Gaps = 1/479 (0%)

>emb|CAB93976.1| (AJ400965) catalase [Proteus mirabilis]
          Length = 484

 Score =  796 bits (2055), Expect = 0.0
 Identities = 367/475 (77%), Positives = 421/475 (88%), Gaps = 1/475 (0%)

>emb|CAE39685.1| (BX640436) catalase [Bordetella parapertussis]
          Length = 482

 Score =  735 bits (1898), Expect = 0.0
 Identities = 350/481 (72%), Positives = 402/481 (83%), Gaps = 3/481 (0%)

Structural Features:
pfam00199, Catalase.
CD-Length = 385 residues, 100.0% aligned
Score =  631 bits (1628), Expect = 0.0
Identities = 256/386 (66%), Positives = 306/386 (79%), Gaps = 1/386 (0%)

cd00328, catalase.
CD-Length = 471 residues,  99.8% aligned
Score =  755 bits (1950), Expect = 0.0
Identities = 306/471 (64%), Positives = 364/471 (77%), Gaps = 1/471 (0%)

COG0753, KatE, Catalase [Inorganic ion transport and metabolism]
CD-Length = 496 residues,  97.2% aligned
Score =  731 bits (1889), Expect = 0.0
Identities = 297/483 (61%), Positives = 355/483 (73%), Gaps = 6/483 (1%)
Genomic Context:
Comment:
other possible gene name: katE
ReferenceID:1473
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18615
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36933
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:735_cdd.html
URL:
ReferenceID:37021
Author/Investigator(s): Ma JF, Ochsner UA, Klotz MG, Nanayakkara VK, Howell ML, Johnson Z, Posey JE, Vasil ML, Monaco JJ, Hassett DJ.
Title: Bacterioferritin A modulates catalase A (KatA) activity and resistance to hydrogen peroxide in Pseudomonas aeruginosa.
PubMed: 10368148
MedLine:
Source:
J Bacteriol. 1999 Jun;181(12):3730-42.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10368148
Homologs By Global Alignment
Gene ID:735

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1281 PA4236_tr translation of PA4236 482 99.99 99.99 0 2605.0
48426 gb|AAG07624.1|AE004841_2 (AE004841) catalase [Pseudomonas aeruginosa PAO1] 482 99.99 99.99 0 2605.0
48427 gb|AAC03118.1| (AF047025) catalase isozyme A [Pseudomonas aeruginosa] 482 99.99 99.99 0 2605.0
48428 gb|AAM86532.1|AE013900_1 (AE013900) catalase; hydroperoxidase HPII(III) [Yersinia pestis KIM] 483 79.71 88.40 4 2114.0
48429 emb|CAC90045.1| (AJ414147) catalase [Yersinia pestis CO92] 483 79.71 88.40 4 2114.0
GC ORFID: 43737How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4236Glimmer Score:
Start: 4180828Stop: 4179380
Length: 1449
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4236 translation of PA4236Homolog Bit Score 1008.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5214 (ORF: BLASTX 614.0), t_PA4236 (ORF: GLIMMER)
GC ORF Sequence
ATGGAAGAGAAGACCCGCCTGACCACTGCCGCTGGCGCACCGGTGGTCGATAACCAGAACGTGCAGACCGCC
GGTCCGCGTGGCCCGATGTTGCTGCAGGACGTGTGGTTCCTCGAGAAGCTCGCCCACTTCGATCGCGAAGTG
ATCCCCGAGCGCCGCATGCATGCGAAAGGCTCCGCGGCCTATGGCACCTTCACCGTCACCCATGACATCACC
CCCTACACCCGGGCGAAGATCTTCTCCCAGGTCGGCAAGAAGACCGATATGTTCCTGCGCTTCTCCACCGTC
GCCGGTGAGCGTGGCGCGGCGGATGCAGAGCGAGACATCCGCGGCTTCTCCATGCGTTTCTACACCGAGCAG
GGCAACTGGGACCTGGTCGGCAACAACACCCCGGTGTTCTATCTGCGCGACCCGCTCAAGTTCCCCGATCTC
AACCACGTGGTGAAGCGTGACCCGCGCACCAACCTGCGCAATGCGACCTTCAAGTGGGACTTTTTCTCTCAC
CTCCCCGAGTCGCTGCATCAGTTGACCATCGACTTCAGCGACCGCGGTCTGCCGAAGAGCTATCGGCACATC
CATGGTTTCGGCAGCCATACCTTCAGCTTCATCAATGCGAACAACGAGCGCTTCTGGGTCAAGTTCCACTTC
AAGACCCAACAGGGCATCGAGAACCTGACCAACGCCGAGGCTGCCGAAGTGATCGCCCAGGACCGCGAGAGT
TCGCAGCGCGACTTGTACGAGAGCATCGAGAAAGGCGACTTCCCGCGCTGGAAGATGTACGTGCAGATCATG
CCCGAGAAGGAAGCGGCCACCTATCGCTACAACCCGTTCGACCTGACCAAGGTCTGGCCCCACGGTGACTAC
CCGTTGATCGAAGTGGGCTTCTTCGAGCTGAACCGTAACCCGGACAACTACTTCGCCGAGGTCGAGCAGGCC
GCTTTCACGCCGGCCAACGTGGTGCCCGGTATCGGTTTCTCGCCGGACAAGATGCTCCAGGGCCGTCTGTTC
TCCTACGGCGACGCCCATCGCTATCGCCTGGGCGTCAACCACCACCAGATCCCGGTGAACGCCGCGCGTTGC
CCGCACCAGGTCTACCACCGCGACGGCGGCATGCGGGTGGACGGCAACAACGCCCATCAGCGCGTCACCTAC
GAGCCGAACAGCTTCAACCAGTGGCAGGAGCAGCCTGACTTCTCCGAGCCGCCGCTGAGCCTGGAGGGCGCG
GCGGACCACTGGAACCACCGGGTGGACGACGACTACTACAGCCAGCCCGCCGCGCTGTTCCATCTGTTCACC
GACGAGCAGAAGCAGCGGCTGTTCGCCAACATCGCCGAAGACATCCGCGATGTACCGGAACAGATCCAGCGT
CGCCAGATCGGCCTGTTCCTCAAGGTCGACCCGGCCTACGGCAAAGGCGTCGCCGACGCCCTCGGCCTGAAG
CTGGACTGA