ViewGene
Locus Name:
GeneID:
Location:

GeneID:731
TrivialName: PA14_38840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38840
PAO1 Ortholog Locus:PA1984
Sequence Length:1521
Protein Length:506
Start: 3464203
Stop: 3462683
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAC79659.1| (AF068264) NAD+ dependent acetaldehyde dehydrogenase [Pseudomonas aeruginosa]
Identities = 502/506 (99%), Positives = 504/506 (99%)
Sequence:
ATGATCTACGCAGCGCCCGGAACCCCCGGTGCCGTCGTCACCTTCAAGCCTCGCTACGGCAACTACATCGGC
GGCGAGTTCGTGCCTCCGGTCAAGGGCCAGTACTTCACCAACACCTCGCCGGTGAACGGCCAGCCGATCGCC
GAGTTCCCCCGTTCCACCGCCGAGGACATCGACAAGGCCCTCGACGCCGCCCACGCCGCCGCCGACGCCTGG
GGCCGTACCTCGGTGCAGGAGCGTTCGAACATCCTGCTGAAGATCGCCGACCGCATCGAGCAGAACCTGGAA
CTGCTCGCCGTCACCGAGACCTGGGACAACGGCAAGGCCGTGCGCGAGACCCTCAACGCCGACATTCCCCTG
GCCGCCGACCACTTCCGCTACTTCGCCGGCTGCATCCGCGCCCAGGAAGGCTCCGCCGCCGAGATCAACGAC
AGCACCGTGGCCTACCACATCCATGAGCCGCTGGGCGTGGTCGGGCAGATCATCCCGTGGAACTTCCCGCTG
CTGATGGCCGCCTGGAAGCTGGCCCCGGCGCTGGCCGCCGGCAACTGCGTGGTGCTCAAGCCGGCCGAGCAG
ACCCCGCTGGGCATCTGCGTGCTGCTGGAACTCATCGGCGACCTGCTGCCGCCGGGCGTGCTCAACGTCGTC
CAGGGCTTCGGCAGGGAGGCCGGCGAGGCCCTGGCCACCAGCAAGCGCATCGCCAAGATCGCCTTCACCGGT
TCCACCCCGGTCGGCTCGCACATCCTCAAGTGCGCGGCGGAGAACATCATTCCCTCCACCGTCGAGCTGGGC
GGCAAGAGCCCGAACATCTATTTCGAAGACATCATGCAGGCCGAGCCGGCGTTCATCGAGAAGGCCGCCGAG
GGCCTGGTGCTGGCTTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCCCGCGCGCTGGTCCAGGAGTCG
ATCTACCCGGCGTTCATGGAAGAGGTGCTGAAGAAGGTCAGgGCGATCAAGCGCGGCGACCCGCTGGACACC
GAGACCATGGTCGGCGCCCAGGCTTCCCAGCAGCAGTACGAGAAGATCCTCTCCTACCTCGACATCGCCCAG
CAGGAAGGCGCCGAAGTGCTCACCGGCGGCAGCGTCGAGAAGCTCGAAGGCAACCTGGCCAGCGGCTACTAC
ATCCAGCCGACCCTGCTCAAGGGACACAACAAGATGCGCGTGTTCCAGGAGGAAATCTTCGGCCCGGTGGTC
GGCGTCACCACCTTCAAGGACGAAGCCGAGGCCCTGGCCATCGCCAACGACACCGAGTACGGCCTCGGCGCC
GGCCTCTGGACCCGCGACATCAACCGCGCCTACCGCATGGGCCGCGGGATCAAGGCCGGTCGCGTGTGGACC
AACTGCTACCACCTGTACCCGGCCCACGCCGCGTTCGGCGGCTACAAGAAGTCCGGCGTCGGTCGCGAGACG
CACAAGATGATGCTTGACCACTACCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCGACCCGCTGGGC
TTCTTCTGA
Translation:
MIYAAPGTPGAVVTFKPRYGNYIGGEFVPPVKGQYFTNTSPVNGQPIAEFPRSTAEDIDKALDAAHAAADAW
GRTSVQERSNILLKIADRIEQNLELLAVTETWDNGKAVRETLNADIPLAADHFRYFAGCIRAQEGSAAEIND
STVAYHIHEPLGVVGQIIPWNFPLLMAAWKLAPALAAGNCVVLKPAEQTPLGICVLLELIGDLLPPGVLNVV
QGFGREAGEALATSKRIAKIAFTGSTPVGSHILKCAAENIIPSTVELGGKSPNIYFEDIMQAEPAFIEKAAE
GLVLAFFNQGEVCTCPSRALVQESIYPAFMEEVLKKVRAIKRGDPLDTETMVGAQASQQQYEKILSYLDIAQ
QEGAEVLTGGSVEKLEGNLASGYYIQPTLLKGHNKMRVFQEEIFGPVVGVTTFKDEAEALAIANDTEYGLGA
GLWTRDINRAYRMGRGIKAGRVWTNCYHLYPAHAAFGGYKKSGVGRETHKMMLDHYQQTKNLLVSYDIDPLG
FF*
AnnotationID:740GeneID:731
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 17:05:39
Gene Name:
Confidence Code:3
GeneProduct:NAD+ dependent acetaldehyde dehydrogenase
Cell Localization:()
Synonyms:exaC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative aldehyde dehydrogenase
Functional Category Confidence Code:5
COGs:pfam00171,COG1012
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66172.1|AE016245_1 (AE016776) aldehyde dehydrogenase family protein [Pseudomonas
           putida KT2440]
          Length = 506

 Score =  941 bits (2433), Expect = 0.0
 Identities = 461/506 (91%), Positives = 486/506 (96%)

>emb|CAD16837.1| (AL646073) PUTATIVE NAD+ DEPENDENT ACETALDEHYDE DEHYDROGENASE
           OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
          Length = 506

 Score =  910 bits (2351), Expect = 0.0
 Identities = 443/506 (87%), Positives = 473/506 (93%)

>gb|AAC13644.1| (AF029734) NAD-dependent chloroacetaldehyde dehydrogenase
           [Xanthobacter autotrophicus]
          Length = 506

 Score =  715 bits (1845), Expect = 0.0
 Identities = 347/492 (70%), Positives = 397/492 (80%)








 
Structural Features:
pfam00171, Aldedh, Aldehyde dehydrogenase family
CD-Length = 464 residues, 100.0% aligned
Score =  563 bits (1452), Expect = 2e-161
Identities = 226/476 (47%), Positives = 306/476 (64%), Gaps = 16/476 (3%)

COG1012, PutA, NAD-dependent aldehyde dehydrogenases 
[Energy production and conversion]
CD-Length = 472 residues,  99.8% aligned
Score =  503 bits (1297), Expect = 2e-143
Identities = 220/487 (45%), Positives = 291/487 (59%), Gaps = 21/487 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1465




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18607




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32742




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:731_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:731
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
48170
                           gb|AAC79659.1|
                           (AF068264) NAD+ dependent acetaldehyde dehydrogenase [Pseudomonas aeruginosa]
                           506
                           99.20
                           99.60
                           0
                           2615.0
     

     
     
1274
                           PA1984_tr
                           translation of PA1984
                           506
                           99.01
                           99.60
                           0
                           2611.0
     

     
     
48171
                           gb|AAG05372.1|AE004625_2
                           (AE004625) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
                           506
                           99.01
                           99.60
                           0
                           2611.0
     

     
     
48172
                           gb|AAG07409.1|AE004819_2
                           (AE004819) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
                           506
                           97.82
                           98.81
                           0
                           2577.0
     

     
     
1275
                           PA4022_tr
                           translation of PA4022
                           506
                           97.82
                           98.81
                           0
                           2577.0
     

     






      

          
GC ORFID: 43733How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1984Glimmer Score: 

          
Start: 1489708Stop: 1491228

          
Length: 1521


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1984 translation of PA1984Homolog Bit Score 1010.0

          
Other Homologs:  t_PA4022 (ORF: BLASTX 997.0), psyr_15may02_Scaffold2_revised_gene3624 (ORF: BLASTX 903.0), t_PA4123 (ORF: BLASTX 346.0), t_PA0219 (ORF: BLASTX 329.0), psyr_15may02_Scaffold2_revised_gene3643 (ORF: BLASTX 272.0), t_PA1984 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCTACGCAGCGCCCGGAACCCCCGGTGCCGTCGTCACCTTCAAGCCTCGCTACGGCAACTACATCGGC 
GGCGAGTTCGTGCCTCCGGTCAAGGGCCAGTACTTCACCAACACCTCGCCGGTGAACGGCCAGCCGATCGCC 
GAGTTCCCCCGTTCCACCGCCGAGGACATCGACAAGGCCCTCGACGCCGCCCACGCCGCCGCCGACGCCTGG 
GGCCGTACCTCGGTGCAGGAGCGTTCGAACATCCTGCTGAAGATCGCCGACCGCATCGAGCAGAACCTGGAA 
CTGCTCGCCGTCACCGAGACCTGGGACAACGGCAAGGCCGTGCGCGAGACCCTCAACGCCGACATTCCCCTG 
GCCGCCGACCACTTCCGCTACTTCGCCGGCTGCATCCGCGCCCAGGAAGGCTCCGCCGCCGAGATCAACGAC 
AGCACCGTGGCCTACCACATCCATGAGCCGCTGGGCGTGGTCGGGCAGATCATCCCGTGGAACTTCCCGCTG 
CTGATGGCCGCCTGGAAGCTGGCCCCGGCGCTGGCCGCCGGCAACTGCGTGGTGCTCAAGCCGGCCGAGCAG 
ACCCCGCTGGGCATCTGCGTGCTGCTGGAACTCATCGGCGACCTGCTGCCGCCGGGCGTGCTCAACGTCGTC 
CAGGGCTTCGGCAGGGAGGCCGGCGAGGCCCTGGCCACCAGCAAGCGCATCGCCAAGATCGCCTTCACCGGT 
TCCACCCCGGTCGGCTCGCACATCCTCAAGTGCGCGGCGGAGAACATCATTCCCTCCACCGTCGAGCTGGGC 
GGCAAGAGCCCGAACATCTATTTCGAAGACATCATGCAGGCCGAGCCGGCGTTCATCGAGAAGGCCGCCGAG 
GGCCTGGTGCTGGCTTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCCCGCGCGCTGGTCCAGGAGTCG 
ATCTACCCGGCGTTCATGGAAGAGGTGCTGAAGAAGGTCAGgGCGATCAAGCGCGGCGACCCGCTGGACACC 
GAGACCATGGTCGGCGCCCAGGCTTCCCAGCAGCAGTACGAGAAGATCCTCTCCTACCTCGACATCGCCCAG 
CAGGAAGGCGCCGAAGTGCTCACCGGCGGCAGCGTCGAGAAGCTCGAAGGCAACCTGGCCAGCGGCTACTAC 
ATCCAGCCGACCCTGCTCAAGGGACACAACAAGATGCGCGTGTTCCAGGAGGAAATCTTCGGCCCGGTGGTC 
GGCGTCACCACCTTCAAGGACGAAGCCGAGGCCCTGGCCATCGCCAACGACACCGAGTACGGCCTCGGCGCC 
GGCCTCTGGACCCGCGACATCAACCGCGCCTACCGCATGGGCCGCGGGATCAAGGCCGGTCGCGTGTGGACC 
AACTGCTACCACCTGTACCCGGCCCACGCCGCGTTCGGCGGCTACAAGAAGTCCGGCGTCGGTCGCGAGACG 
CACAAGATGATGCTTGACCACTACCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCGACCCGCTGGGC 
TTCTTCTGA