ViewGene
Locus Name:
GeneID:
Location:

GeneID:730
TrivialName: PA14_44300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44300
PAO1 Ortholog Locus:PA1561
Sequence Length:1566
Protein Length:521
Start: 3943576
Stop: 3945141
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04950.1|AE004584_6 (AE004584) aerotaxis receptor Aer [Pseudomonas aeruginosa PAO1]
Identities = 520/521 (99%), Positives = 521/521 (100%)
Sequence:
ATGCGCAACAATCAACCGATCACCCAGCACGAGCGCGTCTATCCGGCGGAGCAACGCCTGATCACCACCACC
AATCTCAAAGGCATCATTACCTACTGCAATGAAGCCTTCATCGACATCAGCGGCTTCAGTCGCGAGGAGCTG
ATGTCCGCGCCGCACAATCTGATCCGTCACCCCGACGTCCCGCCGGCGGTGTTCGCCCACATGTGGACCACC
CTCAAAGCCGGCCGCCCGTGGATGGGGATCGTCAAGAACCGCTGCAAGAACGGCGACCACTACTGGGTCAGC
GCCTATGTCACGCCGATCTACGACCAGGGCGCGGTGGTCGGCTACGAGTCGGTGCGGGTCAAGCCGACCGCC
GAACAGATCCAGCGCGCCGAGGCCCTCTACCGTCGCCTCGGCGCCGGCAAGCCGGCGATCCCCCGGCGCGAC
CGCTGGCTGCCGGTACTGCTCGACTGGCTGCCGTTCATCCTGATCAGCCAGATCGGCTTCCTCATCGGTATC
TGGCTGAACTCCTGGTGGGGCTTCATCCTCGCCGGCCTGCTCGCCGTTCCGCTCGGCCTGGCCGGACTGCGC
TGGCAGAAGCGCGGGCTGAAGCGCCTGATGCGGCTCGCCGAACAGACCACCTCCGACCCGCTGATCGCGCAG
ATGTACACCGACAGCCGCGGCGAGCAGGCGCGCCTGGAAATGGCCATCCTCAGCCAGGACGCGCGCCTGAAG
ACCTGCCTGACGCGCCTGCAGGACACCGCCGAATACCTCACCGAACAGGCGCGCCAGGCCGACACCCTGGCC
CACCACAGCTCCGCCGGTCTGGAACAGCAGCGCGCAGAGACCGAACAGGTGGCCACCGCGGTCAACGAGATG
GCCGCCACCACCCAGGAAGTGGCGAACAATGTCCAGTTGACCGCCGACGCCACACAGAAGGCCAACGAACTG
ACCTCGCGCGGCCGCGACATCGCCGCGGAGACGCGCAACGCCATCCAGCGCCTGTCGGAGTCGGTGGGCGAG
ACCGGGGCCGCGGTGAGTCGCCTGGCCCAGGACAGCAACGAGATCGGCGGCGTGGTCGATGTGATCAAGGGC
ATCGCCGACCAGACCAACCTGCTCGCCCTCAACGCCGCCATCGAGGCGGCGCGGGCCGGCGACCAGGGACGC
GGCTTCGCCGTGGTGGCCGACGAAGTGCGCTCGCTGGCGCAACGCACCGCGGCCTCCACCGAGCAGATCCAC
CATCTGATCGCCAAGTTGCAGAACACCGCCAACGATGCGGTACATACCATGGAGAGCGGCCTGCAGCAGGCC
GAAGCCGGGGTCCAGCGGGTGCTGGAAGCCGACAGCGCGCTGGTCGGCATCAGCGAGGCGGTCAGCAACATC
ACCGAGATGACCACCCAGATCGCCGCCGCCGCGGAGGAACAGAGCGCGGTGGCCGAGGAAATCAACCGCAAC
ATCAGCACCATCGCCGCCCTGGCCGAGCAGACCTCCGACGAGGCGCTGCGCACGGCAAAACTGAGCGAGGAA
CTGACCACCACCGCGCAGAGCCAGTATTCCCTGGTCGAGCGCTTCAACCGCTGA
Translation:
MRNNQPITQHERVYPAEQRLITTTNLKGIITYCNEAFIDISGFSREELMSAPHNLIRHPDVPPAVFAHMWTT
LKAGRPWMGIVKNRCKNGDHYWVSAYVTPIYDQGAVVGYESVRVKPTAEQIQRAEALYRRLGAGKPAIPRRD
RWLPVLLDWLPFILISQIGFLIGIWLNSWWGFILAGLLAVPLGLAGLRWQKRGLKRLMRLAEQTTSDPLIAQ
MYTDSRGEQARLEMAILSQDARLKTCLTRLQDTAEYLTEQARQADTLAHHSSAGLEQQRAETEQVATAVNEM
AATTQEVANNVQLTADATQKANELTSRGRDIAAETRNAIQRLSESVGETGAAVSRLAQDSNEIGGVVDVIKG
IADQTNLLALNAAIEAARAGDQGRGFAVVADEVRSLAQRTAASTEQIHHLIAKLQNTANDAVHTMESGLQQA
EAGVQRVLEADSALVGISEAVSNITEMTTQIAAAAEEQSAVAEEINRNISTIAALAEQTSDEALRTAKLSEE
LTTTAQSQYSLVERFNR*
AnnotationID:739GeneID:730
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 12:12:22
Gene Name:aer
Confidence Code:2
GeneProduct:aerotaxis receptor Aer
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0840,smart00283,pfam00015
Secondary Functional Category(ies):adaptation, protection
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67724.1|AE016403_9 (AE016781) aerotaxis receptor Aer-2 [Pseudomonas putida KT2440]
          Length = 521

 Score =  809 bits (2089), Expect = 0.0
 Identities = 406/521 (77%), Positives = 466/521 (89%)

>gb|AAO55532.1| (AE016862) aerotaxis receptor [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 521

 Score =  801 bits (2069), Expect = 0.0
 Identities = 404/521 (77%), Positives = 453/521 (86%)








 
Structural Features:
COG0840, Tar, Methyl-accepting chemotaxis protein 
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 408 residues,  96.6% aligned
Score =  210 bits (534), Expect = 4e-55
Identities = 130/397 (32%), Positives = 205/397 (51%), Gaps = 3/397 (0%)

smart00283, MA, Methyl-accepting chemotaxis-like domains 
(chemotaxis sensory transducer).
CD-Length = 262 residues,  97.7% aligned
Score =  207 bits (527), Expect = 4e-54
Identities = 112/256 (43%), Positives = 158/256 (61%)

pfam00015, MCPsignal, Methyl-accepting chemotaxis protein (MCP) signaling domain.
CD-Length = 251 residues,  98.8% aligned
Score =  185 bits (472), Expect = 8e-48
Identities = 101/248 (40%), Positives = 149/248 (60%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1463




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18605




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37241




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:730_cdd.html


    		




 
URL:

















    ReferenceID:37915




  
Author/Investigator(s):
        Nichols NN, Harwood CS.





  
Title:
        An aerotaxis transducer gene from Pseudomonas putida.




  
PubMed:
        10612751


MedLine:
        




    
Source:
FEMS Microbiol Lett. 2000 Jan 1;182(1):177-83.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10612751









           
Homologs By Global Alignment 

           

       



     
Gene ID:730
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1265
                           PA1561_tr
                           translation of PA1561
                           521
                           99.80
                           99.99
                           0
                           2613.0
     

     
     
48082
                           gb|AAG04950.1|AE004584_6
                           (AE004584) aerotaxis receptor Aer [Pseudomonas aeruginosa PAO1]
                           521
                           99.80
                           99.99
                           0
                           2613.0
     

     
     
48083
                           gb|AAN67724.1|AE016403_9
                           (AE016781) aerotaxis receptor Aer-2 [Pseudomonas putida KT2440]
                           521
                           77.92
                           89.44
                           0
                           2089.0
     

     
     
48084
                           gb|AAO55532.1|
                           (AE016862) aerotaxis receptor [Pseudomonas syringae pv. tomato str. DC3000]
                           521
                           77.54
                           86.94
                           0
                           2069.0
     

     
     
48085
                           gb|AAN70095.1|AE016649_3
                           (AE016791) aerotaxis receptor, putative [Pseudomonas putida KT2440]
                           534
                           50.00
                           67.79
                           26
                           1263.0
     

     






      

          
GC ORFID: 43732How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1561Glimmer Score: 

          
Start: 1010333Stop: 1008768

          
Length: 1566


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1561 translation of PA1561Homolog Bit Score 1011.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7520 (ORF: BLASTX 811.0), psyr_15may02_Scaffold5_revised_gene6405 (ORF: BLASTX 492.0), t_PA1608 (ORF: BLASTX 231.0), psyr_15may02_Scaffold1_revised_gene1081 (ORF: BLASTX 216.0), psyr_15may02_Scaffold1_revised_gene392 (ORF: BLASTX 213.0), psyr_15may02_Scaffold1_revised_gene610 (ORF: BLASTX 193.0), t_PA1561 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCAACAATCAACCGATCACCCAGCACGAGCGCGTCTATCCGGCGGAGCAACGCCTGATCACCACCACC 
AATCTCAAAGGCATCATTACCTACTGCAATGAAGCCTTCATCGACATCAGCGGCTTCAGTCGCGAGGAGCTG 
ATGTCCGCGCCGCACAATCTGATCCGTCACCCCGACGTCCCGCCGGCGGTGTTCGCCCACATGTGGACCACC 
CTCAAAGCCGGCCGCCCGTGGATGGGGATCGTCAAGAACCGCTGCAAGAACGGCGACCACTACTGGGTCAGC 
GCCTATGTCACGCCGATCTACGACCAGGGCGCGGTGGTCGGCTACGAGTCGGTGCGGGTCAAGCCGACCGCC 
GAACAGATCCAGCGCGCCGAGGCCCTCTACCGTCGCCTCGGCGCCGGCAAGCCGGCGATCCCCCGGCGCGAC 
CGCTGGCTGCCGGTACTGCTCGACTGGCTGCCGTTCATCCTGATCAGCCAGATCGGCTTCCTCATCGGTATC 
TGGCTGAACTCCTGGTGGGGCTTCATCCTCGCCGGCCTGCTCGCCGTTCCGCTCGGCCTGGCCGGACTGCGC 
TGGCAGAAGCGCGGGCTGAAGCGCCTGATGCGGCTCGCCGAACAGACCACCTCCGACCCGCTGATCGCGCAG 
ATGTACACCGACAGCCGCGGCGAGCAGGCGCGCCTGGAAATGGCCATCCTCAGCCAGGACGCGCGCCTGAAG 
ACCTGCCTGACGCGCCTGCAGGACACCGCCGAATACCTCACCGAACAGGCGCGCCAGGCCGACACCCTGGCC 
CACCACAGCTCCGCCGGTCTGGAACAGCAGCGCGCAGAGACCGAACAGGTGGCCACCGCGGTCAACGAGATG 
GCCGCCACCACCCAGGAAGTGGCGAACAATGTCCAGTTGACCGCCGACGCCACACAGAAGGCCAACGAACTG 
ACCTCGCGCGGCCGCGACATCGCCGCGGAGACGCGCAACGCCATCCAGCGCCTGTCGGAGTCGGTGGGCGAG 
ACCGGGGCCGCGGTGAGTCGCCTGGCCCAGGACAGCAACGAGATCGGCGGCGTGGTCGATGTGATCAAGGGC 
ATCGCCGACCAGACCAACCTGCTCGCCCTCAACGCCGCCATCGAGGCGGCGCGGGCCGGCGACCAGGGACGC 
GGCTTCGCCGTGGTGGCCGACGAAGTGCGCTCGCTGGCGCAACGCACCGCGGCCTCCACCGAGCAGATCCAC 
CATCTGATCGCCAAGTTGCAGAACACCGCCAACGATGCGGTACATACCATGGAGAGCGGCCTGCAGCAGGCC 
GAAGCCGGGGTCCAGCGGGTGCTGGAAGCCGACAGCGCGCTGGTCGGCATCAGCGAGGCGGTCAGCAACATC 
ACCGAGATGACCACCCAGATCGCCGCCGCCGCGGAGGAACAGAGCGCGGTGGCCGAGGAAATCAACCGCAAC 
ATCAGCACCATCGCCGCCCTGGCCGAGCAGACCTCCGACGAGGCGCTGCGCACGGCAAAACTGAGCGAGGAA 
CTGACCACCACCGCGCAGAGCCAGTATTCCCTGGTCGAGCGCTTCAACCGCTGA