ViewGene
Locus Name:
GeneID:
Location:

GeneID:73
TrivialName: PA14_64710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64710
PAO1 Ortholog Locus:PA4897
Sequence Length:2970
Protein Length:989
Start: 5762752
Stop: 5765721
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08282.1|AE004902_10 (AE004902) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 981/989 (99%), Positives = 983/989 (99%)
Sequence:
ATGACGGGCGCCAACCCTGCGAGCGAAGAAGTCATGTCCCTACAACGCCCTATCCCCAGCCTGGCGCGTCCC
TTGTCGCGCCTCTCCCCGCTCACCCTTGCCCTGCGCTGCGCCCTGCTCGGCCTGTCGGCGGTCGGCGCCGGC
CTGCTCGGCGGCGGCCTGGCCCACGCGCAGAGCGTCGGCCAGCACAGCGCGGCTACCCGCCTGGACGACGCC
ACGCCGCGCAGCTACGACATCCCGGCGGGTTCGCTGGGCGCCTCCCTGGGCGCCTTCGCCAGCCAGTCGGGC
CTGCTGCTGTCCTTCGACCCCGCGCTGACCCGCGGCCGCACCGCGCCGGCGCTCAAGGGCCGCTACAGCGTA
CTGGAAGGCTTGCAGCGAGTGCTGTCGAACACCGGCCTGCAGGTCGCGGCGGGAACCTCCGGCGCCTACCTG
CTGGTCGAGCCGCGCATGTCCGGAGAAGCCCCGGCCGACCTGTCGCCGGTGGTGGTCTCGGCCGCCGAGCTG
GCCGATCCGCAGaaGgAAACCTATACCGCGCCGCGCTCGTCGGTGTACCTCTCCAGCGAAGACATCGACCGC
TTCGGCCGGGTTTCCGTGGGTGACCTGCTCCAGGGCATCCCGGGCGTACAGGTCGGCGACAGCCGCAACGGT
GGCGCGCTGGACGTCAACATCCGCGGCATCCAGGGGCAGAGCCGGGTGGCGGTGCGGGTCGACGGCGCGGAG
CAGGCGCTGGACGTCTACCGCGGCTACGCCGGCACCCAGCAGCGCAGCTACATCGATCCCGACCTGGTCAGC
AGCGTGACCGTCGACAAGGGTCCCTCGACCCGCTCGGGCGCGATCGGCGGCAGCGTGGAAATGCGCACCATC
GGCGTCAAGGACATCCTGGTCGACGGCAAGGACCTCGGCGTGCGCTTCACCGGCAACGTCTGGAACAACGGC
GTCGCCCCGCAGCACCGCAGCGCCAGTTCGAAGACCGAGAATCTCAGCAGCGTGCCGCACGATGACCGCGGC
AGCCTGTTCGGCTCCCAGGCCAAGTCCGGCAGCGCCGCCTTCGCCTACCGCAACGAGCATCTGGACCTGGTC
GCCGCCTATGCGCAGCGCAATCAGGGCAACTACTTTTCCGGCAAGAAAGGCCAGGACCGCTATCGCGTCTAC
AACCGCTACGGTCGCGAGGAAAGCAGCGTAGCCAAGGTCTACAACGCAGGAGAGGAAGTGCTCAACTCGTCG
TCGGAGACCGAGTCCTACCTGCTCAAGGCGACCTGGCGCATCGCCGACGAGCACACCCTGGACCTCGGCTAT
CGTCGCTACGACGGGCGCACCGGGGAGATCATGCCGTCGGACATCTTCCGTTTCGGCACCGCCGGCATCTAC
CAGTACCCATTGAGCGAAGTGAAGATCGACACCTACACCGCACGCTACCGTTACCTGCCCGAGAACAATCCG
CTGGTGGACCTCAGTACCGGCCTGTGGATGACCGAGGCGAAGAGCGACATGCTGACCTCGGTGCTGGCACCG
CGCTCCCAGGCCTATCGCTCCGACCGCAACTGGACGCGCCAGGACAACCGGCGCATCGGCGGCGACCTGAAC
AACGTGGCGCGCTTCGAAACCGACTTCGGCGATTTCAAGCTCGACCTCGGCGGCTCGTTCCAGGTCGAAGAC
ATCCAGCCGCAGAAAAGCGTGGTCACCACCCTCCACGACATCAACGCCAACCGCACCCTGAGGGACGCCACC
CGCCAGGAATACGGCCTCAACGGCAAGCTCGAGTTCAAGCCGGTCGAGCGCCTGACGCTATGGGGCGGCGGC
CGCTACAGCCACTTCAACAGCAAGGACAACGGCATCTCCGCCTCGCCGCGGCGCGAGGATCGCGACATGCGC
TTCATCACGGTGAGCAGGCCCGGCTACTACGGCTCGATGATGTGGTTCCCCGACCAGAACGGCCAGTACACC
GACGCCACCGATCCGCGCCTCAACAACGGCATCGTCACCAACAACACCAATAATCCGTTCGAAGGCATTCCC
TTCGACGAGTTCGGCCCGGCCAACGTGACGGTCCATCCCTCGCGGGTCACCAACGTGGTCACCGGCTACAAC
TACAGCAAGAAGGGCAGCAGCCGCGGCGGCGGTTTCTCGCCGGCATTCGGGATCAATTTCGAGCTGGCCCCG
GATACCTTCGTCTACGCCTCCTACATCGAAGGCCTGCGCCTGCCATCGCTGTTCGAGACCAGCCAGGGCACC
CTCCAGGTCGAGCCGGGCAAGGAACTCAAGCCCGAGCGTTCGCGCAGCTGGGAGATCGGTGCCAGCGCGCTG
CGCGACAGCCTGTTGGCCGACGGCGACTCGGCGGCGATCAAGCTGGCCTACTTCAACAACACCATCAAGAAC
TACATCACCCGCTATTACGATCCGGGCCAGATGGGCCTGATGACCTTCAGCAACACCGACAGCTACCGCACC
AGCGGTCTCGAACTGCAATCGCACTACGACGCAGGGCGGGTGTTCGCCGACCTGTCGGCGACCTACTACCTG
AAGACCGAGACCTGCGACGCCGCCTTCGCCGCCAGGCTGCGCGCCGGCGCCAACCGCTACCAGCGCACCGAG
AACACGCCGAACTGCACGCCGGGCAGCTTCATGGGCTCCTATACCAACACGCAGAACCCGCCGCGGCTGGCG
ACCAACCTGACCGCCGGCCTGCGCTTCTTCGACCAGGCCCTGACCCTGGGCGGGCGCATGACCTATACCTCC
GGCCCCACCGCCACGGCGGACAAGCCCTGGCAGGTCGGCGCCACCACACCGCAGATCGAGTACCGCTCGGTG
CAGCTGTTCGACCTGTTCCTCAAGTACAAGCTGTTCGAGCACACCGAACTGAATGCCTCGCTGCAGAACCTC
ACCGACCGCTATTACCTCGACCCGCTGGCACAGAGTTTCATGCCCGCGCCCGGGCGTACCCTGCGGGTGGGG
ATGCAGGCGAAGTTCTGA
Translation:
MTGANPASEEVMSLQRPIPSLARPLSRLSPLTLALRCALLGLSAVGAGLLGGGLAHAQSVGQHSAATRLDDA
TPRSYDIPAGSLGASLGAFASQSGLLLSFDPALTRGRTAPALKGRYSVLEGLQRVLSNTGLQVAAGTSGAYL
LVEPRMSGEAPADLSPVVVSAAELADPQKETYTAPRSSVYLSSEDIDRFGRVSVGDLLQGIPGVQVGDSRNG
GALDVNIRGIQGQSRVAVRVDGAEQALDVYRGYAGTQQRSYIDPDLVSSVTVDKGPSTRSGAIGGSVEMRTI
GVKDILVDGKDLGVRFTGNVWNNGVAPQHRSASSKTENLSSVPHDDRGSLFGSQAKSGSAAFAYRNEHLDLV
AAYAQRNQGNYFSGKKGQDRYRVYNRYGREESSVAKVYNAGEEVLNSSSETESYLLKATWRIADEHTLDLGY
RRYDGRTGEIMPSDIFRFGTAGIYQYPLSEVKIDTYTARYRYLPENNPLVDLSTGLWMTEAKSDMLTSVLAP
RSQAYRSDRNWTRQDNRRIGGDLNNVARFETDFGDFKLDLGGSFQVEDIQPQKSVVTTLHDINANRTLRDAT
RQEYGLNGKLEFKPVERLTLWGGGRYSHFNSKDNGISASPRREDRDMRFITVSRPGYYGSMMWFPDQNGQYT
DATDPRLNNGIVTNNTNNPFEGIPFDEFGPANVTVHPSRVTNVVTGYNYSKKGSSRGGGFSPAFGINFELAP
DTFVYASYIEGLRLPSLFETSQGTLQVEPGKELKPERSRSWEIGASALRDSLLADGDSAAIKLAYFNNTIKN
YITRYYDPGQMGLMTFSNTDSYRTSGLELQSHYDAGRVFADLSATYYLKTETCDAAFAARLRAGANRYQRTE
NTPNCTPGSFMGSYTNTQNPPRLATNLTAGLRFFDQALTLGGRMTYTSGPTATADKPWQVGATTPQIEYRSV
QLFDLFLKYKLFEHTELNASLQNLTDRYYLDPLAQSFMPAPGRTLRVGMQAKF*
AnnotationID:83GeneID:73
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 13:01:30
Gene Name:
Confidence Code:3
GeneProduct:putative extracellular heme-binding protein
Cell Localization:()
Synonyms:PA4897
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01347,pfam00593
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE32402.1| (BX640442) putative extracellular heme-binding protein [Bordetella
           bronchiseptica]
          Length = 980

 Score = 1095 bits (2833), Expect = 0.0
 Identities = 580/990 (58%), Positives = 702/990 (70%), Gaps = 35/990 (3%)

>emb|CAE37752.1| (BX640430) putative extracellular heme-binding protein [Bordetella
           parapertussis]
          Length = 980

 Score = 1090 bits (2818), Expect = 0.0
 Identities = 577/990 (58%), Positives = 700/990 (70%), Gaps = 35/990 (3%)








 
Structural Features:
cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created 
by a monomeric 22 strand (22,24) anti-parallel beta-barrel.
CD-Length = 672 residues,  99.4% aligned
Score =  153 bits (387), Expect = 9e-38

pfam00593, TonB_dep_Rec, TonB dependent receptor.
CD-Length = 712 residues,  99.9% aligned
Score =  137 bits (345), Expect = 7e-33
Identities = 155/830 (18%), Positives = 233/830 (28%), Gaps = 136/830 (16%)







   
Genomic Context:






   
Comment:


















    ReferenceID:149




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17291




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35161




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:73_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:73
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
148
                           PA4897_tr
                           translation of PA4897
                           989
                           99.19
                           99.39
                           0
                           5076.0
     

     
     
13497
                           gb|AAG08282.1|AE004902_10
                           (AE004902) hypothetical protein PA4897 [Pseudomonas aeruginosa PAO1]
                           989
                           99.19
                           99.39
                           0
                           5076.0
     

     
     
13498
                           emb|CAE32402.1|
                           (BX640442) putative extracellular heme-binding protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           1021
                           56.70
                           68.56
                           73
                           2864.0
     

     
     
13499
                           emb|CAE37752.1|
                           (BX640430) putative extracellular heme-binding protein [Bordetella parapertussis]
                           1021
                           56.41
                           68.36
                           73
                           2849.0
     

     






      

          
GC ORFID: 43075How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4897Glimmer Score: 

          
Start: 5026433Stop: 5029402

          
Length: 2970


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4897 translation of PA4897Homolog Bit Score 1959.0

          
Other Homologs:  t_PA4897 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGGGCGCCAACCCTGCGAGCGAAGAAGTCATGTCCCTACAACGCCCTATCCCCAGCCTGGCGCGTCCC 
TTGTCGCGCCTCTCCCCGCTCACCCTTGCCCTGCGCTGCGCCCTGCTCGGCCTGTCGGCGGTCGGCGCCGGC 
CTGCTCGGCGGCGGCCTGGCCCACGCGCAGAGCGTCGGCCAGCACAGCGCGGCTACCCGCCTGGACGACGCC 
ACGCCGCGCAGCTACGACATCCCGGCGGGTTCGCTGGGCGCCTCCCTGGGCGCCTTCGCCAGCCAGTCGGGC 
CTGCTGCTGTCCTTCGACCCCGCGCTGACCCGCGGCCGCACCGCGCCGGCGCTCAAGGGCCGCTACAGCGTA 
CTGGAAGGCTTGCAGCGAGTGCTGTCGAACACCGGCCTGCAGGTCGCGGCGGGAACCTCCGGCGCCTACCTG 
CTGGTCGAGCCGCGCATGTCCGGAGAAGCCCCGGCCGACCTGTCGCCGGTGGTGGTCTCGGCCGCCGAGCTG 
GCCGATCCGCAGaaGgAAACCTATACCGCGCCGCGCTCGTCGGTGTACCTCTCCAGCGAAGACATCGACCGC 
TTCGGCCGGGTTTCCGTGGGTGACCTGCTCCAGGGCATCCCGGGCGTACAGGTCGGCGACAGCCGCAACGGT 
GGCGCGCTGGACGTCAACATCCGCGGCATCCAGGGGCAGAGCCGGGTGGCGGTGCGGGTCGACGGCGCGGAG 
CAGGCGCTGGACGTCTACCGCGGCTACGCCGGCACCCAGCAGCGCAGCTACATCGATCCCGACCTGGTCAGC 
AGCGTGACCGTCGACAAGGGTCCCTCGACCCGCTCGGGCGCGATCGGCGGCAGCGTGGAAATGCGCACCATC 
GGCGTCAAGGACATCCTGGTCGACGGCAAGGACCTCGGCGTGCGCTTCACCGGCAACGTCTGGAACAACGGC 
GTCGCCCCGCAGCACCGCAGCGCCAGTTCGAAGACCGAGAATCTCAGCAGCGTGCCGCACGATGACCGCGGC 
AGCCTGTTCGGCTCCCAGGCCAAGTCCGGCAGCGCCGCCTTCGCCTACCGCAACGAGCATCTGGACCTGGTC 
GCCGCCTATGCGCAGCGCAATCAGGGCAACTACTTTTCCGGCAAGAAAGGCCAGGACCGCTATCGCGTCTAC 
AACCGCTACGGTCGCGAGGAAAGCAGCGTAGCCAAGGTCTACAACGCAGGAGAGGAAGTGCTCAACTCGTCG 
TCGGAGACCGAGTCCTACCTGCTCAAGGCGACCTGGCGCATCGCCGACGAGCACACCCTGGACCTCGGCTAT 
CGTCGCTACGACGGGCGCACCGGGGAGATCATGCCGTCGGACATCTTCCGTTTCGGCACCGCCGGCATCTAC 
CAGTACCCATTGAGCGAAGTGAAGATCGACACCTACACCGCACGCTACCGTTACCTGCCCGAGAACAATCCG 
CTGGTGGACCTCAGTACCGGCCTGTGGATGACCGAGGCGAAGAGCGACATGCTGACCTCGGTGCTGGCACCG 
CGCTCCCAGGCCTATCGCTCCGACCGCAACTGGACGCGCCAGGACAACCGGCGCATCGGCGGCGACCTGAAC 
AACGTGGCGCGCTTCGAAACCGACTTCGGCGATTTCAAGCTCGACCTCGGCGGCTCGTTCCAGGTCGAAGAC 
ATCCAGCCGCAGAAAAGCGTGGTCACCACCCTCCACGACATCAACGCCAACCGCACCCTGAGGGACGCCACC 
CGCCAGGAATACGGCCTCAACGGCAAGCTCGAGTTCAAGCCGGTCGAGCGCCTGACGCTATGGGGCGGCGGC 
CGCTACAGCCACTTCAACAGCAAGGACAACGGCATCTCCGCCTCGCCGCGGCGCGAGGATCGCGACATGCGC 
TTCATCACGGTGAGCAGGCCCGGCTACTACGGCTCGATGATGTGGTTCCCCGACCAGAACGGCCAGTACACC 
GACGCCACCGATCCGCGCCTCAACAACGGCATCGTCACCAACAACACCAATAATCCGTTCGAAGGCATTCCC 
TTCGACGAGTTCGGCCCGGCCAACGTGACGGTCCATCCCTCGCGGGTCACCAACGTGGTCACCGGCTACAAC 
TACAGCAAGAAGGGCAGCAGCCGCGGCGGCGGTTTCTCGCCGGCATTCGGGATCAATTTCGAGCTGGCCCCG 
GATACCTTCGTCTACGCCTCCTACATCGAAGGCCTGCGCCTGCCATCGCTGTTCGAGACCAGCCAGGGCACC 
CTCCAGGTCGAGCCGGGCAAGGAACTCAAGCCCGAGCGTTCGCGCAGCTGGGAGATCGGTGCCAGCGCGCTG 
CGCGACAGCCTGTTGGCCGACGGCGACTCGGCGGCGATCAAGCTGGCCTACTTCAACAACACCATCAAGAAC 
TACATCACCCGCTATTACGATCCGGGCCAGATGGGCCTGATGACCTTCAGCAACACCGACAGCTACCGCACC 
AGCGGTCTCGAACTGCAATCGCACTACGACGCAGGGCGGGTGTTCGCCGACCTGTCGGCGACCTACTACCTG 
AAGACCGAGACCTGCGACGCCGCCTTCGCCGCCAGGCTGCGCGCCGGCGCCAACCGCTACCAGCGCACCGAG 
AACACGCCGAACTGCACGCCGGGCAGCTTCATGGGCTCCTATACCAACACGCAGAACCCGCCGCGGCTGGCG 
ACCAACCTGACCGCCGGCCTGCGCTTCTTCGACCAGGCCCTGACCCTGGGCGGGCGCATGACCTATACCTCC 
GGCCCCACCGCCACGGCGGACAAGCCCTGGCAGGTCGGCGCCACCACACCGCAGATCGAGTACCGCTCGGTG 
CAGCTGTTCGACCTGTTCCTCAAGTACAAGCTGTTCGAGCACACCGAACTGAATGCCTCGCTGCAGAACCTC 
ACCGACCGCTATTACCTCGACCCGCTGGCACAGAGTTTCATGCCCGCGCCCGGGCGTACCCTGCGGGTGGGG 
ATGCAGGCGAAGTTCTGA