ViewGene
Locus Name:
GeneID:
Location:

GeneID:729
TrivialName: PA14_54620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54620
PAO1 Ortholog Locus:PA0747
Sequence Length:1509
Protein Length:502
Start: 4841942
Stop: 4843450
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04136.1|AE004509_11 (AE004509) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 498/502 (99%), Positives = 501/502 (99%)
Sequence:
ATGGCCAAGGCAATCCCCCAGCTGATCGACGGCGAATGGCGCGGCAGCCGTTCCCGCGAACTGATCGAAGTC
ACCGATCCGGCGACCCAGGACGTCCTCGCGCTGGCGCCGAAGGCCACCGCCGACGAGATCGAGCAGGCCATC
GCCAGCGCCCAGCGCGCCTTCGAGACCTGGCGCGAAGTCCCGGCTCCCGAGCGAGCGCGGTTGATGCTGCGC
TACCAGCACCTGCTCAAGGAACACCACGACGAACTCGGCGAACTGCTGGCCCGGGAGACTGGCAAGAACCTC
GCCGATGCCAAGGGCGACGTGTGGCGCGGCATCGAGGTGGTCGAACACGCCGCCAACGTGGCCAGCCTGATG
ATGGGCGAGACGGTGGAAAACGTCGCCCGCGAGATCGACACCGCCAGTTGGATCCAGCCCCTCGGCGTGTGC
GCCGGGATCACCCCGTTCAATTTCCCGGCGATGATCCCGCTGTGGATGTTCCCGCTGGCCATCGCCTGCGGC
AACACCTTCGTCCTCAAGCCCTCCGAACAGGATCCGCTGACACCCAATCGCCTCGCCGAGCTGTTCCTCGAg
GCCGGCGCGCCGAAGGGCGTGCTGCAGGTGATCCATGGCGGCCGCGAGCAGGTCGATGCCCTCCTCACCCAC
CCGGACATCCGGGCGATTTCCTTCGTCGGCTCGGTCGCCGTCGGCCAGCACGTGTACCGCACCGGCACCGCG
CACCTGAAGCGGGTGCAGGCCTTCGCCGGGGCGAAGAACCACATGGTGATCCTCCCCGACGCGAACAAGGCC
CAGGTTCTCGGCAACCTGGTCGGTGCCAGTTGCGGCGCCGCCGGCCAGCGCTGCATGGCGATCAGCGCGGCG
GTGTTCGTCGGCGCGGCGCGCGAGTGGATTCCCGAACTGGCCGAGCGGATGGCCGCCCTGCGCCCCGGCCAC
TGGCAGGACCCGGACGCCGCCTATGGTCCGCTGATCAGTCCGCAGGCGCGCCAGCGCGTGCTGCGCCTGATC
GCCGAAGGCAAGGCGGAAGGCGCCGAGTGCCTGCTCGACGGCTCGCAGTGCCAGGTCGAAGGCTATCCCAAC
GGCAACTGGCTCGGTCCCACCCTGTTCCGCGCAGTGACGCCGAAGATGGGCCTGTACCGCGAGGAGATCTTC
GGCCCGGTGCTGGCTTGCCTGGAGGTCGATACCCTGGAAGAGGCGATTGCCCTGGTCAACGCCAATCCCTAT
GGCAACGGCACCAGCCTGTTCACCCGCTCCGGCGGCGCCGCTCGGCGCTACCAGCACGCGGTGCAGGTCGGC
CAGGTGGGGATCAACGTGCCGATCCCGGTACCGCTGCCGTTCTTCTCCTTCACCGGCTGGAAAGGCTCCTTC
TACGGCGACCTGCACGCCTACGGCAAGCAGGCGGTGCGCTTCTATACCGAGACCAAGACCGTCACCAGCCGC
TGGTTCGACGATGAACCGACGACCGACGAATCGTCGGCCGGCCCGAACATGACCATCCATCTCAAGTGA
Translation:
MAKAIPQLIDGEWRGSRSRELIEVTDPATQDVLALAPKATADEIEQAIASAQRAFETWREVPAPERARLMLR
YQHLLKEHHDELGELLARETGKNLADAKGDVWRGIEVVEHAANVASLMMGETVENVAREIDTASWIQPLGVC
AGITPFNFPAMIPLWMFPLAIACGNTFVLKPSEQDPLTPNRLAELFLEAGAPKGVLQVIHGGREQVDALLTH
PDIRAISFVGSVAVGQHVYRTGTAHLKRVQAFAGAKNHMVILPDANKAQVLGNLVGASCGAAGQRCMAISAA
VFVGAAREWIPELAERMAALRPGHWQDPDAAYGPLISPQARQRVLRLIAEGKAEGAECLLDGSQCQVEGYPN
GNWLGPTLFRAVTPKMGLYREEIFGPVLACLEVDTLEEAIALVNANPYGNGTSLFTRSGGAARRYQHAVQVG
QVGINVPIPVPLPFFSFTGWKGSFYGDLHAYGKQAVRFYTETKTVTSRWFDDEPTTDESSAGPNMTIHLK*
AnnotationID:738GeneID:729
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 10:10:10
Gene Name:
Confidence Code:3
GeneProduct:probable aldehyde dehydrogenase
Cell Localization:()
Synonyms:PA0747
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00171, COG1012
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00171, Aldedh, Aldehyde dehydrogenase family. This family ..., Score: 515, 9e-147
COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy p..., Score: 435, 1e-122






   
Genomic Context:






   
Comment:


















    ReferenceID:1461




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18603




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:729
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1262
                           PA0747_tr
                           translation of PA0747
                           502
                           99.20
                           99.80
                           0
                           2615.0
     

     
     
48014
                           gb|AAG04136.1|AE004509_11
                           (AE004509) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
                           502
                           99.20
                           99.80
                           0
                           2615.0
     

     
     
48015
                           gb|AAN54733.1|AE015613_10
                           (AE015613) methylmalonate-semialdehyde dehydrogenase [Shewanella oneidensis MR-1]
                           502
                           71.51
                           82.66
                           3
                           1928.0
     

     
     
48016
                           dbj|BAC61964.1|
                           (AP005086) methylmalonate-semialdehyde dehydrogenase [Vibrio parahaemolyticus]
                           503
                           71.37
                           83.10
                           7
                           1917.0
     

     
     
48017
                           gb|AAO07444.1|AE016809_206
                           (AE016809) NAD-dependent aldehyde dehydrogenase [Vibrio vulnificus CMCP6]
                           502
                           70.91
                           83.26
                           5
                           1905.0
     

     






      

          
GC ORFID: 43731How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0747Glimmer Score: 

          
Start: 111965Stop: 110457

          
Length: 1509


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0747 translation of PA0747Homolog Bit Score 1011.0

          
Other Homologs:  t_PA3570 (ORF: BLASTX 710.0), psyr_15may02_Scaffold2_revised_gene3514 (ORF: BLASTX 603.0), t_PA0130 (ORF: BLASTX 459.0), psyr_15may02_Scaffold2_revised_gene3039 (ORF: BLASTX 453.0), psyr_15may02_Scaffold2_revised_gene3505 (ORF: BLASTX 449.0), t_PA0747 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCAAGGCAATCCCCCAGCTGATCGACGGCGAATGGCGCGGCAGCCGTTCCCGCGAACTGATCGAAGTC 
ACCGATCCGGCGACCCAGGACGTCCTCGCGCTGGCGCCGAAGGCCACCGCCGACGAGATCGAGCAGGCCATC 
GCCAGCGCCCAGCGCGCCTTCGAGACCTGGCGCGAAGTCCCGGCTCCCGAGCGAGCGCGGTTGATGCTGCGC 
TACCAGCACCTGCTCAAGGAACACCACGACGAACTCGGCGAACTGCTGGCCCGGGAGACTGGCAAGAACCTC 
GCCGATGCCAAGGGCGACGTGTGGCGCGGCATCGAGGTGGTCGAACACGCCGCCAACGTGGCCAGCCTGATG 
ATGGGCGAGACGGTGGAAAACGTCGCCCGCGAGATCGACACCGCCAGTTGGATCCAGCCCCTCGGCGTGTGC 
GCCGGGATCACCCCGTTCAATTTCCCGGCGATGATCCCGCTGTGGATGTTCCCGCTGGCCATCGCCTGCGGC 
AACACCTTCGTCCTCAAGCCCTCCGAACAGGATCCGCTGACACCCAATCGCCTCGCCGAGCTGTTCCTCGAg 
GCCGGCGCGCCGAAGGGCGTGCTGCAGGTGATCCATGGCGGCCGCGAGCAGGTCGATGCCCTCCTCACCCAC 
CCGGACATCCGGGCGATTTCCTTCGTCGGCTCGGTCGCCGTCGGCCAGCACGTGTACCGCACCGGCACCGCG 
CACCTGAAGCGGGTGCAGGCCTTCGCCGGGGCGAAGAACCACATGGTGATCCTCCCCGACGCGAACAAGGCC 
CAGGTTCTCGGCAACCTGGTCGGTGCCAGTTGCGGCGCCGCCGGCCAGCGCTGCATGGCGATCAGCGCGGCG 
GTGTTCGTCGGCGCGGCGCGCGAGTGGATTCCCGAACTGGCCGAGCGGATGGCCGCCCTGCGCCCCGGCCAC 
TGGCAGGACCCGGACGCCGCCTATGGTCCGCTGATCAGTCCGCAGGCGCGCCAGCGCGTGCTGCGCCTGATC 
GCCGAAGGCAAGGCGGAAGGCGCCGAGTGCCTGCTCGACGGCTCGCAGTGCCAGGTCGAAGGCTATCCCAAC 
GGCAACTGGCTCGGTCCCACCCTGTTCCGCGCAGTGACGCCGAAGATGGGCCTGTACCGCGAGGAGATCTTC 
GGCCCGGTGCTGGCTTGCCTGGAGGTCGATACCCTGGAAGAGGCGATTGCCCTGGTCAACGCCAATCCCTAT 
GGCAACGGCACCAGCCTGTTCACCCGCTCCGGCGGCGCCGCTCGGCGCTACCAGCACGCGGTGCAGGTCGGC 
CAGGTGGGGATCAACGTGCCGATCCCGGTACCGCTGCCGTTCTTCTCCTTCACCGGCTGGAAAGGCTCCTTC 
TACGGCGACCTGCACGCCTACGGCAAGCAGGCGGTGCGCTTCTATACCGAGACCAAGACCGTCACCAGCCGC 
TGGTTCGACGATGAACCGACGACCGACGAATCGTCGGCCGGCCCGAACATGACCATCCATCTCAAGTGA