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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG07095.1|AE004789_15 (AE004789) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
Identities = 535/542 (98%), Positives = 539/542 (99%)
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Sequence:
GTGAAGAACTGGACTGTTCGCCAGCGAATCCTGGCAAGTTTCGCCGTGATCATCGCGATCATGCTGCTGATG
GCCGCTACTGCGTACGTGAAGATGTTGACGGTGGAAAAGGGCGCCTACCGTGTCCAGGACGACGCCATGCCG
GGGATGTACTTCATCACCCTGGTACGCAGTTCGTGGACCGACAACTACCTGCAGACCCAGGAACTGTTCGGC
GTCACCGACGACCACGAGCTGAGCAAGGCCGAGGCTGACAGCATCCTTGCCAGCGAGGAGCGCCTGGACCAG
CAGATCGCCTCCTACCAGAAGACCATGAACCCGGACGAGGCCCGCGACCACGAACTGCTCGCCGGTTTCCTG
GGTGTGCGCAAGGCCTACCTGGAGCAGCACGACAAGGTGCTCGAGCTGTATCGCGAGAAACGCTTCGAAGAA
GCCGGCAAGCTCGTCGCCGGCCCGTTGACCGAGCACTGGCGCGACGGTCGCAAGTACCTCAACGAGCTGATC
GAGCTGAACAAGGACATCGCCGATCGCGCCTCGGAGAACATCGTCAACGCGGTGGACGACGCCGAACTGAGC
ATGCTGGTGACCCTGTTGCTGGCGGTGGTGGTAGCCGGCATCTGCGGGTTCCTGCTGTTGCGGGCGATCACC
CAGCCGATCCAGAAGATCGTCCGCAGCCTCGACCTGATGGCCGGCGGCGACCTCACCGCGCGCCTGAACCTT
GGCCGCCGCGACGAGTTCGGCGCCATCGAGACCGGTTTCAATGGCATGGCCGAGGAACTCAAGGGCCTGGTG
TCGCAGGCCCAGCGTTCTTCGGTGCAGGTCACCACCTCGGTCACCGAGATCGCCGCGACCTCCAAGCAGCAG
CAGGCCACCGCCACCGAAACCGCCGCGACCACCACGGAGATCGGCGCCACTTCTCGCGAGATCGCCGCCACC
TCGCGCGACCTGGTGCGGACCATGAGCGAAGTCTCCGGCGCCGCCGAGCAGACTTCGACCCTGGCCGGTTCC
GGCCAGTTGGGCCTGGCGCGCATGGAGGAAACCATGCACCACGTGATGGGCGCGGCCGACCTGGTCAACGCC
AAGCTGGCGATCCTCAACGAGAAGGCCGGCAACATCAACCAGGTGGTCACCACCATCGTCAAGGTCGCCGAC
CAGACCAACCTGCTCTCGCTGAACGCCGCCATCGAGGCGGAGAAGGCCGGCGAGTACGGCCGCGGGTTCGCC
GTGGTGGCCACCGAGGTGCGCCGGCTGGCGGACCAGACCGCGGTCGCCACCTACGATATCGAGCAGATGGTG
CGCGAGATCCAGTCGGCGGTATCGGCCGGGGTGATGGGCATGGACAAGTTCTCCGAGGAGGTCCGCCGCGGT
ATCGCCGAGGTCGGCCAGGTCGGCGAGCAACTGTCGCAGATCATCCAGCAGGTGCAGGCGCTGGCGCCGCGG
GTGCAGATGGTCAACGAGGGCATGCAGGCCCAGGCGACCGGTGCCGAGCAGATCAACCAGGCGCTGGTGCAA
CTGGGCGAGGCCACCGGGCAGACCGTGGAGTCGCTGCGCCAGGCCAGCTTCGCCATCGATGAGCTGAACCTG
GTGGCGAACGGGCTGCGCAACGGCGTATCCCGCTTCAAAGTCTGA |
Translation:
MKNWTVRQRILASFAVIIAIMLLMAATAYVKMLTVEKGAYRVQDDAMPGMYFITLVRSSWTDNYLQTQELFG
VTDDHELSKAEADSILASEERLDQQIASYQKTMNPDEARDHELLAGFLGVRKAYLEQHDKVLELYREKRFEE
AGKLVAGPLTEHWRDGRKYLNELIELNKDIADRASENIVNAVDDAELSMLVTLLLAVVVAGICGFLLLRAIT
QPIQKIVRSLDLMAGGDLTARLNLGRRDEFGAIETGFNGMAEELKGLVSQAQRSSVQVTTSVTEIAATSKQQ
QATATETAATTTEIGATSREIAATSRDLVRTMSEVSGAAEQTSTLAGSGQLGLARMEETMHHVMGAADLVNA
KLAILNEKAGNINQVVTTIVKVADQTNLLSLNAAIEAEKAGEYGRGFAVVATEVRRLADQTAVATYDIEQMV
REIQSAVSAGVMGMDKFSEEVRRGIAEVGQVGEQLSQIIQQVQALAPRVQMVNEGMQAQATGAEQINQALVQ
LGEATGQTVESLRQASFAIDELNLVANGLRNGVSRFKV* |
AnnotationID:736 | GeneID:727 |
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Modification Date/Time: |
2006-02-02 14:02:58 |
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GeneProduct: | putative methyl-accepting chemotaxis transducer |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (16) Motility & Attachment |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | Chemotaxis |
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Homology: | >gb|AAN67110.1|AE016340_1 (AE016779) methyl-accepting chemotaxis transducer [Pseudomonas
putida KT2440]
Length = 540
Score = 709 bits (1831), Expect = 0.0
Identities = 379/542 (69%), Positives = 453/542 (83%), Gaps = 2/542 (0%)
>gb|AAL27609.1|AF430345_1 (AF430345) transducer-like protein Tlp3 [Pseudomonas putida]
Length = 443
Score = 607 bits (1566), Expect = e-173
Identities = 331/445 (74%), Positives = 376/445 (84%), Gaps = 2/445 (0%)
>dbj|BAB54729.1| (AP003017) chemotaxis transducer [Mesorhizobium loti]
Length = 545
Score = 489 bits (1258), Expect = e-137
Identities = 279/547 (51%), Positives = 370/547 (67%), Gaps = 9/547 (1%) |
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Structural Features: | COG0840, Tar, Methyl-accepting chemotaxis protein
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 408 residues, 100.0% aligned
Score = 182 bits (463), Expect = 1e-46
Identities = 117/411 (28%), Positives = 214/411 (52%), Gaps = 3/411 (0%)
smart00283, MA, Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer).
CD-Length = 262 residues, 100.0% aligned
Score = 150 bits (379), Expect = 1e-36
Identities = 94/269 (34%), Positives = 150/269 (55%), Gaps = 7/269 (2%)
pfam00015, MCPsignal, Methyl-accepting chemotaxis protein
(MCP) signaling domain.
CD-Length = 251 residues, 99.6% aligned
Score = 127 bits (319), Expect = 9e-30
Identities = 83/250 (33%), Positives = 138/250 (55%) |
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