ViewGene

Locus Name:
GeneID:
Location:

GeneID:727
TrivialName: PA14_16430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16430
PAO1 Ortholog Locus:PA3708
Sequence Length:1629
Protein Length:542
Start: 1405645
Stop: 1407273
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07095.1|AE004789_15 (AE004789) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
Identities = 535/542 (98%), Positives = 539/542 (99%)
Sequence:
GTGAAGAACTGGACTGTTCGCCAGCGAATCCTGGCAAGTTTCGCCGTGATCATCGCGATCATGCTGCTGATG
GCCGCTACTGCGTACGTGAAGATGTTGACGGTGGAAAAGGGCGCCTACCGTGTCCAGGACGACGCCATGCCG
GGGATGTACTTCATCACCCTGGTACGCAGTTCGTGGACCGACAACTACCTGCAGACCCAGGAACTGTTCGGC
GTCACCGACGACCACGAGCTGAGCAAGGCCGAGGCTGACAGCATCCTTGCCAGCGAGGAGCGCCTGGACCAG
CAGATCGCCTCCTACCAGAAGACCATGAACCCGGACGAGGCCCGCGACCACGAACTGCTCGCCGGTTTCCTG
GGTGTGCGCAAGGCCTACCTGGAGCAGCACGACAAGGTGCTCGAGCTGTATCGCGAGAAACGCTTCGAAGAA
GCCGGCAAGCTCGTCGCCGGCCCGTTGACCGAGCACTGGCGCGACGGTCGCAAGTACCTCAACGAGCTGATC
GAGCTGAACAAGGACATCGCCGATCGCGCCTCGGAGAACATCGTCAACGCGGTGGACGACGCCGAACTGAGC
ATGCTGGTGACCCTGTTGCTGGCGGTGGTGGTAGCCGGCATCTGCGGGTTCCTGCTGTTGCGGGCGATCACC
CAGCCGATCCAGAAGATCGTCCGCAGCCTCGACCTGATGGCCGGCGGCGACCTCACCGCGCGCCTGAACCTT
GGCCGCCGCGACGAGTTCGGCGCCATCGAGACCGGTTTCAATGGCATGGCCGAGGAACTCAAGGGCCTGGTG
TCGCAGGCCCAGCGTTCTTCGGTGCAGGTCACCACCTCGGTCACCGAGATCGCCGCGACCTCCAAGCAGCAG
CAGGCCACCGCCACCGAAACCGCCGCGACCACCACGGAGATCGGCGCCACTTCTCGCGAGATCGCCGCCACC
TCGCGCGACCTGGTGCGGACCATGAGCGAAGTCTCCGGCGCCGCCGAGCAGACTTCGACCCTGGCCGGTTCC
GGCCAGTTGGGCCTGGCGCGCATGGAGGAAACCATGCACCACGTGATGGGCGCGGCCGACCTGGTCAACGCC
AAGCTGGCGATCCTCAACGAGAAGGCCGGCAACATCAACCAGGTGGTCACCACCATCGTCAAGGTCGCCGAC
CAGACCAACCTGCTCTCGCTGAACGCCGCCATCGAGGCGGAGAAGGCCGGCGAGTACGGCCGCGGGTTCGCC
GTGGTGGCCACCGAGGTGCGCCGGCTGGCGGACCAGACCGCGGTCGCCACCTACGATATCGAGCAGATGGTG
CGCGAGATCCAGTCGGCGGTATCGGCCGGGGTGATGGGCATGGACAAGTTCTCCGAGGAGGTCCGCCGCGGT
ATCGCCGAGGTCGGCCAGGTCGGCGAGCAACTGTCGCAGATCATCCAGCAGGTGCAGGCGCTGGCGCCGCGG
GTGCAGATGGTCAACGAGGGCATGCAGGCCCAGGCGACCGGTGCCGAGCAGATCAACCAGGCGCTGGTGCAA
CTGGGCGAGGCCACCGGGCAGACCGTGGAGTCGCTGCGCCAGGCCAGCTTCGCCATCGATGAGCTGAACCTG
GTGGCGAACGGGCTGCGCAACGGCGTATCCCGCTTCAAAGTCTGA
Translation:
MKNWTVRQRILASFAVIIAIMLLMAATAYVKMLTVEKGAYRVQDDAMPGMYFITLVRSSWTDNYLQTQELFG
VTDDHELSKAEADSILASEERLDQQIASYQKTMNPDEARDHELLAGFLGVRKAYLEQHDKVLELYREKRFEE
AGKLVAGPLTEHWRDGRKYLNELIELNKDIADRASENIVNAVDDAELSMLVTLLLAVVVAGICGFLLLRAIT
QPIQKIVRSLDLMAGGDLTARLNLGRRDEFGAIETGFNGMAEELKGLVSQAQRSSVQVTTSVTEIAATSKQQ
QATATETAATTTEIGATSREIAATSRDLVRTMSEVSGAAEQTSTLAGSGQLGLARMEETMHHVMGAADLVNA
KLAILNEKAGNINQVVTTIVKVADQTNLLSLNAAIEAEKAGEYGRGFAVVATEVRRLADQTAVATYDIEQMV
REIQSAVSAGVMGMDKFSEEVRRGIAEVGQVGEQLSQIIQQVQALAPRVQMVNEGMQAQATGAEQINQALVQ
LGEATGQTVESLRQASFAIDELNLVANGLRNGVSRFKV*
AnnotationID:736GeneID:727
AnnotatorUID: danlee
Modification Date/Time: 2006-02-02 14:02:58
Gene Name:wspA
Confidence Code:3
GeneProduct:putative methyl-accepting chemotaxis transducer
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0840,smart00283,pfam00015
Secondary Functional Category(ies):Chemotaxis
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67110.1|AE016340_1 (AE016779) methyl-accepting chemotaxis transducer [Pseudomonas
           putida KT2440]
          Length = 540

 Score =  709 bits (1831), Expect = 0.0
 Identities = 379/542 (69%), Positives = 453/542 (83%), Gaps = 2/542 (0%)

>gb|AAL27609.1|AF430345_1 (AF430345) transducer-like protein Tlp3 [Pseudomonas putida]
          Length = 443

 Score =  607 bits (1566), Expect = e-173
 Identities = 331/445 (74%), Positives = 376/445 (84%), Gaps = 2/445 (0%)

>dbj|BAB54729.1| (AP003017) chemotaxis transducer [Mesorhizobium loti]
          Length = 545

 Score =  489 bits (1258), Expect = e-137
 Identities = 279/547 (51%), Positives = 370/547 (67%), Gaps = 9/547 (1%)
Structural Features:
COG0840, Tar, Methyl-accepting chemotaxis protein 
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 408 residues, 100.0% aligned
Score =  182 bits (463), Expect = 1e-46
Identities = 117/411 (28%), Positives = 214/411 (52%), Gaps = 3/411 (0%)

smart00283, MA, Methyl-accepting chemotaxis-like domains 
(chemotaxis sensory transducer).
CD-Length = 262 residues, 100.0% aligned
Score =  150 bits (379), Expect = 1e-36
Identities = 94/269 (34%), Positives = 150/269 (55%), Gaps = 7/269 (2%)

pfam00015, MCPsignal, Methyl-accepting chemotaxis protein 
(MCP) signaling domain.
CD-Length = 251 residues,  99.6% aligned
Score =  127 bits (319), Expect = 9e-30
Identities = 83/250 (33%), Positives = 138/250 (55%)
Genomic Context:
Comment:
ReferenceID:14209
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18599
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31843
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:727_cdd.html
URL:
Homologs By Global Alignment
Gene ID:727

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1259 PA3708_tr translation of PA3708 542 98.70 99.44 0 2616.0
47955 gb|AAG07095.1|AE004789_15 (AE004789) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1] 542 98.52 99.44 0 2613.0
47956 gb|AAN67110.1|AE016340_1 (AE016779) methyl-accepting chemotaxis transducer [Pseudomonas putida KT2440] 544 69.85 83.63 6 1831.0
47958 gb|AAO55014.1| (AE016861) methyl-accepting chemotaxis protein [Pseudomonas syringae pv. tomato str. DC3000] 542 69.37 79.88 2 1757.0
47957 gb|AAO92333.1| (AY074937) WspA [Pseudomonas fluorescens] 551 68.23 79.12 13 1784.0
GC ORFID: 43729How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3708Glimmer Score:
Start: 3548292Stop: 3546664
Length: 1629
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3708 translation of PA3708Homolog Bit Score 1012.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4581 (ORF: BLASTX 681.0), t_PA3708 (ORF: GLIMMER)
GC ORF Sequence
GTGAAGAACTGGACTGTTCGCCAGCGAATCCTGGCAAGTTTCGCCGTGATCATCGCGATCATGCTGCTGATG
GCCGCTACTGCGTACGTGAAGATGTTGACGGTGGAAAAGGGCGCCTACCGTGTCCAGGACGACGCCATGCCG
GGGATGTACTTCATCACCCTGGTACGCAGTTCGTGGACCGACAACTACCTGCAGACCCAGGAACTGTTCGGC
GTCACCGACGACCACGAGCTGAGCAAGGCCGAGGCTGACAGCATCCTTGCCAGCGAGGAGCGCCTGGACCAG
CAGATCGCCTCCTACCAGAAGACCATGAACCCGGACGAGGCCCGCGACCACGAACTGCTCGCCGGTTTCCTG
GGTGTGCGCAAGGCCTACCTGGAGCAGCACGACAAGGTGCTCGAGCTGTATCGCGAGAAACGCTTCGAAGAA
GCCGGCAAGCTCGTCGCCGGCCCGTTGACCGAGCACTGGCGCGACGGTCGCAAGTACCTCAACGAGCTGATC
GAGCTGAACAAGGACATCGCCGATCGCGCCTCGGAGAACATCGTCAACGCGGTGGACGACGCCGAACTGAGC
ATGCTGGTGACCCTGTTGCTGGCGGTGGTGGTAGCCGGCATCTGCGGGTTCCTGCTGTTGCGGGCGATCACC
CAGCCGATCCAGAAGATCGTCCGCAGCCTCGACCTGATGGCCGGCGGCGACCTCACCGCGCGCCTGAACCTT
GGCCGCCGCGACGAGTTCGGCGCCATCGAGACCGGTTTCAATGGCATGGCCGAGGAACTCAAGGGCCTGGTG
TCGCAGGCCCAGCGTTCTTCGGTGCAGGTCACCACCTCGGTCACCGAGATCGCCGCGACCTCCAAGCAGCAG
CAGGCCACCGCCACCGAAACCGCCGCGACCACCACGGAGATCGGCGCCACTTCTCGCGAGATCGCCGCCACC
TCGCGCGACCTGGTGCGGACCATGAGCGAAGTCTCCGGCGCCGCCGAGCAGACTTCGACCCTGGCCGGTTCC
GGCCAGTTGGGCCTGGCGCGCATGGAGGAAACCATGCACCACGTGATGGGCGCGGCCGACCTGGTCAACGCC
AAGCTGGCGATCCTCAACGAGAAGGCCGGCAACATCAACCAGGTGGTCACCACCATCGTCAAGGTCGCCGAC
CAGACCAACCTGCTCTCGCTGAACGCCGCCATCGAGGCGGAGAAGGCCGGCGAGTACGGCCGCGGGTTCGCC
GTGGTGGCCACCGAGGTGCGCCGGCTGGCGGACCAGACCGCGGTCGCCACCTACGATATCGAGCAGATGGTG
CGCGAGATCCAGTCGGCGGTATCGGCCGGGGTGATGGGCATGGACAAGTTCTCCGAGGAGGTCCGCCGCGGT
ATCGCCGAGGTCGGCCAGGTCGGCGAGCAACTGTCGCAGATCATCCAGCAGGTGCAGGCGCTGGCGCCGCGG
GTGCAGATGGTCAACGAGGGCATGCAGGCCCAGGCGACCGGTGCCGAGCAGATCAACCAGGCGCTGGTGCAA
CTGGGCGAGGCCACCGGGCAGACCGTGGAGTCGCTGCGCCAGGCCAGCTTCGCCATCGATGAGCTGAACCTG
GTGGCGAACGGGCTGCGCAACGGCGTATCCCGCTTCAAAGTCTGA