ViewGene
Locus Name:
GeneID:
Location:

GeneID:7265
TrivialName: PA14_15380
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15380
PAO1 Ortholog Locus:
Sequence Length:879
Protein Length:292
Start: 1304052
Stop: 1304930
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Replaces PA14_15390 (GeneID 6455).
Sequence:
ATGGCGATTGATGTACTGGCGGCGTTTGAGCACGAACCGCCGGTGCTGGACTTCTTATGGCCTGGCTTCCTG
GCGGGAACGGTCGGCGCGCTCGTCGCCCCAGGGGCTACGGGCAAGAGTTTCTGGGCGCTAGAAGCGGCCATG
AGCATCGCATGCAGCGTTCCGGGTGGCGACCTCGTGGGCCTTGCCCCCGCACATTCCGGGCGCGTGGTCTAT
CTGGCCGGTGAAGACCCGCCGCCCGCGCTTGTGCGGCGCGTTCACGCCATCGGCCAGCACCTCGGGCACGCA
GCTCGCCAAGCCATCGCAGAGAACTTGGTGCTTGAGCCGATCATGGGCAAGCGCATGGACATCATGAACAAG
GCTCACCTGCGCCGCGTCATTGAGGACGGTGCCGGGGCGAGGCTGATTGTGCTGGATACCCTGAGCCGTATT
CACGCCCTCGATGAGAACAGCAACGGCAACATGGCCCACCTCGTGGCCGTGTTGGAGCACGTTGCGGCCACC
ACGGGCGCATCCGTGCTCTACCTACACCACGTCAGCAAGGGAAGCGCCCGCGAAGGGCAAACCGACCAGCAG
CAGGCTGCGCGTGGCGCATCGGCGTTGATCGACAACGCCAGGTGGTGTGGTTACGTCGCTCGCATGACCGAG
GATGAGGCAAAGCGCCTCAGCGACCGCCCCCACGACCGGCAGCCCATCGGTAATGAGCGCCGCAGCTACTTC
GTGCGTTTCGGCGTCAGCAAGCAGAACTACGACGCCACGCCGCTTGATCGCTGGTACATGCGGCACTCCGGC
GGCGTACTGGTGCCAGTGGAACTGCATGAGGCCCGCAGGAGTGAGGAGAAGGGATGCGATGGCCGGAGGCGA
AGCGATGGCTTTTGA
Translation:
MAIDVLAAFEHEPPVLDFLWPGFLAGTVGALVAPGATGKSFWALEAAMSIACSVPGGDLVGLAPAHSGRVVY
LAGEDPPPALVRRVHAIGQHLGHAARQAIAENLVLEPIMGKRMDIMNKAHLRRVIEDGAGARLIVLDTLSRI
HALDENSNGNMAHLVAVLEHVAATTGASVLYLHHVSKGSAREGQTDQQQAARGASALIDNARWCGYVARMTE
DEAKRLSDRPHDRQPIGNERRSYFVRFGVSKQNYDATPLDRWYMRHSGGVLVPVELHEARRSEEKGCDGRRR
SDGF*
AnnotationID:7269GeneID:7265
AnnotatorUID: danlee
Modification Date/Time: 2005-10-17 14:02:47
Gene Name:repA
Confidence Code:2
GeneProduct:replicative helicase, RepA
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01125
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|15983526|ref|NP_387463.1|  RepA [Aeromonas salmonicida]
gi|15822667|gb|AAK97757.1|  RepA [Aeromonas salmonicida]
     Length=292
     Score =  478 bits (1230),  Expect = 1e-133
     Identities = 236/286 (82%), Positives = 264/286 (92%), Gaps = 1/286 (0%)

gi|40850641|gb|AAR96040.1|  RepA [Chlamydia suis]
     Length=347
     Score =  478 bits (1230),  Expect = 1e-133
     Identities = 236/286 (82%), Positives = 264/286 (92%), Gaps = 1/286 (0%)

gi|154647|gb|AAA27381.1|  replication protein A
     Length=290
     Score =  472 bits (1215),  Expect = 6e-132
     Identities = 234/290 (80%), Positives = 262/290 (90%), Gaps = 1/290 (0%)






 
Structural Features:
cd01125, repA, Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most 
Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
             CD-Length = 239 residues, 100.0% aligned
             Score =  199 bits (506), Expect = 5e-52

COG3598, RepA, RecA-family ATPase [DNA replication, recombination, and repair].
             CD-Length = 402 residues, only  44.5% aligned
             Score = 67.7 bits (165), Expect = 2e-12






   
Genomic Context:






   
Comment:


















    ReferenceID:38224




  
Author/Investigator(s):
        Dorrington,R.A. and Rawlings,D.E.





  
Title:
        Characterization of the minimum replicon of the broad-host-range plasmid pTF-FC2 and similarity between pTF-FC2 and the IncQ  plasmids




  
PubMed:
        2120189


MedLine:
        




    
Source:
J. Bacteriol. 172 (10), 5697-5705 (1990)






    
Reference Type:Journal 







    
Data:


    		




 
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