ViewGene

Locus Name:
GeneID:
Location:

GeneID:725
TrivialName: PA14_11810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11810
PAO1 Ortholog Locus:PA4022
Sequence Length:1521
Protein Length:506
Start: 1023978
Stop: 1022458
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07409.1|AE004819_2 (AE004819) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 503/506 (99%), Positives = 504/506 (99%)
Sequence:
ATGCGTTACGCCCATCCCGGTAGCGAAGGCGCCATCGTTTCCTTCAAGGCCCGCTACGGCAACTACATCGGC
GGCGAGTTCGTGCCTCCGGTCAAGGGCCAGTACTTCACCAACACCTCGCCGGTGAACGGCCAGCCGATCGCC
GAGTTCCCCCGTTCCACCGCCGAGGACATCGACAAGGCCCTCGACGCCGCCCACGCCGCCGCCGACGCCTGG
GGCCGCACCTCGGTGCAGGAGCGTTCGAACATCCTGCTGAAGATCGCCGACCGCATCGAGCAGAACCTGGAA
CTGCTCGCCGTCACCGAGACCTGGGACAACGGCAAGGCCGTGCGCGAGACCCTCAACGCCGACATCCCCCTG
GCCGCCGACCACTTCCGCTACTTCGCTGGCTGCATTCGCGCCCAGGAAGGCTCCGCCGCCGAGATCAACGAC
AGCACCGTGGCCTACCACATCCATGAGCCGCTGGGCGTGGTCGGGCAGATCATCCCGTGGAACTTTCCGCTG
CTGATGGCCGCCTGGAAGCTGGCCCCGGCGCTGGCCGCCGGCAACTGCGTGGTGCTCAAGCCGGCCGAGCAG
ACCCCGCTGGGCATCTGCGTGCTGCTGGAACTCATCGGCGACCTGCTGCCGCCGGGCGTGCTCAATGTCGTC
CAGGGCTTCGGCAGGGAGGCCGGCGAGGCCCTGGCCACCAGCAAGCGCATCGCCAAGATCGCCTTCACCGGT
TCCACCCCGGTCGGCTCGCACATCCTCAAGTGCGCGGCGGAGAACATCATTCCCTCCACCGTCGAGCTGGGC
GGCAAGAGCCCGAACATCTATTTCGAAGACATCATGCAGGCCGAGCCGGCGTTCATCGAGAAGGCCGCCGAG
GGCCTGGTGCTGGCTTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCCCGCGCGCTGGTCCAGGAGTCG
ATCTACCCGGCGTTCATGGAAGAGGTGCTGAAGAAGGTCAGGGCGATCAAGCGCGGCGACCCGCTGGACACC
GAGACCATGGTCGGCGCACAGGCCTCCCAGCAGCAGTACGAGAAGATCCTCTCCTACCTCGACATCGCCCAG
CAGGAAGGCGCCGAAGTGCTCACCGGCGGCAGCGTCGAGAAGCTCGAAGGCAACCTGGCCAGCGGCTACTAC
ATCCAGCCGACCCTGCTCAAGGGACACAACAAGATGCGCGTGTTCCAGGAGGAAATCTTCGGCCCGGTGGTC
GGCGTCACCACCTTCAAGGACGAAGCCGAGGCCCTGGCCATCGCCAACGACACCGAGTACGGCCTCGGCGCC
GGCCTCTGGACCCGTGACATCAACCGCGCCTACCGCATGGGCCGCGGGATCAAGGCCGGTCGCGTGTGGACC
AACTGCTACCACCTGTACCCGGCCCACGCCGCGTTCGGCGGCTACAAGAAGTCCGGCGTCGGTCGCGAGACG
CACAAGATGATGCTCGACCACTACCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGC
TTCTTCTAG
Translation:
MRYAHPGSEGAIVSFKARYGNYIGGEFVPPVKGQYFTNTSPVNGQPIAEFPRSTAEDIDKALDAAHAAADAW
GRTSVQERSNILLKIADRIEQNLELLAVTETWDNGKAVRETLNADIPLAADHFRYFAGCIRAQEGSAAEIND
STVAYHIHEPLGVVGQIIPWNFPLLMAAWKLAPALAAGNCVVLKPAEQTPLGICVLLELIGDLLPPGVLNVV
QGFGREAGEALATSKRIAKIAFTGSTPVGSHILKCAAENIIPSTVELGGKSPNIYFEDIMQAEPAFIEKAAE
GLVLAFFNQGEVCTCPSRALVQESIYPAFMEEVLKKVRAIKRGDPLDTETMVGAQASQQQYEKILSYLDIAQ
QEGAEVLTGGSVEKLEGNLASGYYIQPTLLKGHNKMRVFQEEIFGPVVGVTTFKDEAEALAIANDTEYGLGA
GLWTRDINRAYRMGRGIKAGRVWTNCYHLYPAHAAFGGYKKSGVGRETHKMMLDHYQQTKNLLVSYDINPLG
FF*
AnnotationID:734GeneID:725
AnnotatorUID: diggins
Modification Date/Time: 2006-02-05 16:04:19
Gene Name:
Confidence Code:3
GeneProduct:putative aldehyde dehydrogenase
Cell Localization:()
Synonyms:PA4022
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00171,COG1012,KOG2450
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
dbj|BAA24014.1| (AB009654) aldehyde dehydrogenase [Alteromonas sp.]
Length = 505
Score =  803 bits (2073), Expect = 0.0
Identities = 386/506 (76%), Positives = 438/506 (86%), Gaps = 1/506 (0%)
Structural Features:
gnl|CDD|25427 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity
Length = 464
Score =  564 bits (1454), Expect = e-161
Identities = 226/476 (47%), Positives = 306/476 (64%), Gaps = 16/476 (3%)
Genomic Context:
Comment:
ReferenceID:1453
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18595
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34291
Author/Investigator(s): Maeda T, Yoshinaga I, Shiba T, Murakami M, Wada A, Ishida Y.
Title: Cloning and sequencing of the gene encoding an aldehyde dehydrogenase that is induced by growing Alteromonas sp. Strain KE10 in a low concentration of organic nutrients.
PubMed: 10788355
MedLine: 20250629
Source:
Appl Environ Microbiol. 2000 May;66(5):1883-9.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids=20250629&dopt=Citation
Homologs By Global Alignment
Gene ID:725

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1254 PA4022_tr translation of PA4022 506 99.40 99.60 0 2618.0
47800 gb|AAG07409.1|AE004819_2 (AE004819) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1] 506 99.40 99.60 0 2618.0
1255 PA1984_tr translation of PA1984 506 97.82 98.81 0 2578.0
47801 gb|AAG05372.1|AE004625_2 (AE004625) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1] 506 97.82 98.81 0 2578.0
47802 gb|AAC79659.1| (AF068264) NAD+ dependent acetaldehyde dehydrogenase [Pseudomonas aeruginosa] 506 97.62 98.81 0 2572.0
GC ORFID: 43727How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4022Glimmer Score:
Start: 3929959Stop: 3931479
Length: 1521
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA4022 translation of PA4022Homolog Bit Score 1013.0
Other Homologs: t_PA1984 (ORF: BLASTX 997.0), psyr_15may02_Scaffold2_revised_gene3624 (ORF: BLASTX 913.0), t_PA4123 (ORF: BLASTX 346.0), t_PA0219 (ORF: BLASTX 329.0), psyr_15may02_Scaffold2_revised_gene3643 (ORF: BLASTX 272.0), t_PA4022 (ORF: GLIMMER)
GC ORF Sequence
ATGCGTTACGCCCATCCCGGTAGCGAAGGCGCCATCGTTTCCTTCAAGGCCCGCTACGGCAACTACATCGGC
GGCGAGTTCGTGCCTCCGGTCAAGGGCCAGTACTTCACCAACACCTCGCCGGTGAACGGCCAGCCGATCGCC
GAGTTCCCCCGTTCCACCGCCGAGGACATCGACAAGGCCCTCGACGCCGCCCACGCCGCCGCCGACGCCTGG
GGCCGCACCTCGGTGCAGGAGCGTTCGAACATCCTGCTGAAGATCGCCGACCGCATCGAGCAGAACCTGGAA
CTGCTCGCCGTCACCGAGACCTGGGACAACGGCAAGGCCGTGCGCGAGACCCTCAACGCCGACATCCCCCTG
GCCGCCGACCACTTCCGCTACTTCGCTGGCTGCATTCGCGCCCAGGAAGGCTCCGCCGCCGAGATCAACGAC
AGCACCGTGGCCTACCACATCCATGAGCCGCTGGGCGTGGTCGGGCAGATCATCCCGTGGAACTTTCCGCTG
CTGATGGCCGCCTGGAAGCTGGCCCCGGCGCTGGCCGCCGGCAACTGCGTGGTGCTCAAGCCGGCCGAGCAG
ACCCCGCTGGGCATCTGCGTGCTGCTGGAACTCATCGGCGACCTGCTGCCGCCGGGCGTGCTCAATGTCGTC
CAGGGCTTCGGCAGGGAGGCCGGCGAGGCCCTGGCCACCAGCAAGCGCATCGCCAAGATCGCCTTCACCGGT
TCCACCCCGGTCGGCTCGCACATCCTCAAGTGCGCGGCGGAGAACATCATTCCCTCCACCGTCGAGCTGGGC
GGCAAGAGCCCGAACATCTATTTCGAAGACATCATGCAGGCCGAGCCGGCGTTCATCGAGAAGGCCGCCGAG
GGCCTGGTGCTGGCTTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCCCGCGCGCTGGTCCAGGAGTCG
ATCTACCCGGCGTTCATGGAAGAGGTGCTGAAGAAGGTCAGGGCGATCAAGCGCGGCGACCCGCTGGACACC
GAGACCATGGTCGGCGCACAGGCCTCCCAGCAGCAGTACGAGAAGATCCTCTCCTACCTCGACATCGCCCAG
CAGGAAGGCGCCGAAGTGCTCACCGGCGGCAGCGTCGAGAAGCTCGAAGGCAACCTGGCCAGCGGCTACTAC
ATCCAGCCGACCCTGCTCAAGGGACACAACAAGATGCGCGTGTTCCAGGAGGAAATCTTCGGCCCGGTGGTC
GGCGTCACCACCTTCAAGGACGAAGCCGAGGCCCTGGCCATCGCCAACGACACCGAGTACGGCCTCGGCGCC
GGCCTCTGGACCCGTGACATCAACCGCGCCTACCGCATGGGCCGCGGGATCAAGGCCGGTCGCGTGTGGACC
AACTGCTACCACCTGTACCCGGCCCACGCCGCGTTCGGCGGCTACAAGAAGTCCGGCGTCGGTCGCGAGACG
CACAAGATGATGCTCGACCACTACCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGCTGGGC
TTCTTCTAG