ViewGene

Locus Name:
GeneID:
Location:

GeneID:724
TrivialName: PA14_70270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70270
PAO1 Ortholog Locus:
Sequence Length:2565
Protein Length:854
Start: 6264129
Stop: 6266693
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08707.1|AE004945_1 (AE004945) phosphomannomutase AlgC [Pseudomonas aeruginosa PAO1]
Identities = 463/463 (100%), Positives = 463/463 (100%)
Sequence:
TTGGGCGACCTGCTCGAACCGGAAAAGAAGCCGCGCAAGGCAGCGTCCGAACGCGCTGACGGCAAGGACCTG
CTGCCCGGCATAGGCGCCAGCCTGCTGGGCGTGGCGGCCGCCGGCGCCCTGCTCTGGTTCGGCGTCTTCGGC
GGCGCCGGTGAGGCACAGCAGCGCCAGTTGGACGCGGCCTGGGCCGAAGGCCAGGCCGGCGCCTTGCGCCAA
GCCTTGCAGCAACTCGCCGCCGACACCCGCGCCGCCGCGGCCAGCCCCCTCGCCCTCGAAGCCCTGCAAAGC
GGCGACGCCGCCCGCATCGAGGCCGCCCAGCGCAGCCTGCTGGCCTGGGACGGCGTGGTCGATGCCCACCTG
AACGCGCCCGGTCAGGCCACCCAGGACAACGACAGCCCCGGCCCGGTCAGCTTCGCCGCCCTGGATATCCTG
CACCGGGTGGAAAGTGGCCAGAACGTCGCCGCCGAAGCCTACAAGGTCGGCCAGCGCTGGCTGCTGTACAGC
GCCGCGCCGGTGCGCGGCGCCGACCAGAGCCTGCAAGGCACGCTGCTGCTGGCGGTCGACCTGCAACGGCTG
CTGCGCGCCCTGCCGCCCTTGCCGGGCGATGCCGGCCAGGTGCAACTGGTCCAGCAGTTCTCCGGCGCACCG
GCCCAGGTGCTGCTGCAACGCGGTATGCCGGCGCCGGGCAAGGGTGCGCAAGCGCTGGACAGCGGCAATCCG
AACTGGAAACTGAACTACACGCCCGGCAGCGTCGCCTCGACCCAGGCCTCGCCGCTGCTGCTGGCACTCGCG
GCGCTGCTGGCCCTGCTCGGCGGCATCCTCGGCGCCTACCTCACCCGTTCGTCGCTGTTGCGCCGCCTGCAC
CAGGATGTCCTGACCCTCGGTCAGTATCTTCAGGAACTCGGCGGGCAACGCACTGCCAAACCCCCTGTGCCT
AGCCTGCCGGGCTTCGCCCCGCTGATCCAGGCATTGGCCCGCCAGCCGCGGCGCAAGCCGGAGCCGACCAGC
GCGCCCAGCCCTGCCAAGGCAGCGCCGGTGGCGGTGGCGGTGGCGAAAGCGCCTCCTCGCGAGGAGCCGGCA
TTGGCAGATCCGTTGTTCCAGAACACCGACATTCTGGATATCGACATTCTCGATGAAGACCAGGACCTCCTG
GGATTGGAGCAAACCCCCATCATGAGCACTGCAAAAGCACCGACGCTGCCCGCCAGCATCTTCCGCGCCTAC
GACATCCGCGGCGTGGTAGGCGATACCCTCACCGCCGAGACCGCCTACTGGATCGGTCGCGCCATCGGCTCG
GAAAGCCTCGCCCGCGGCGAACCGTGCGTCGCTGTCGGCCGCGATGGCCGCCTGTCCGGTCCCGAACTGGTC
AAGCAGCTGATCCAGGGCCTGGTGGACTGCGGTTGCCAGGTCAGCGACGTGGGCATGGTGCCTACCCCGGTG
CTGTACTACGCGGCCAACGTGCTTGAGGGCAAGTCCGGGGTGATGCTGACCGGCAGCCACAACCCGCCGGAC
TACAACGGCTTCAAGATCGTGGTCGCCGGCGAGACCCTGGCCAACGAGCAGATCCAGGCCCTGCGCGAGCGC
ATCGAGAAAAACGACCTGGCATCCGGCGTCGGCAGCGTAGAGCAGGTCGACATCCTGCCGCGCTACTTCAAG
CAGATCCGCGACGACATCGCCATGGCCAAGCCGATGAAGGTGGTGGTCGACTGCGGCAACGGCGTGGCCGGG
GTGATCGCCCCGCAGCTGATCGAGGCCCTGGGCTGCAGCGTGATCCCGCTGTACTGCGAGGTCGACGGCAAC
TTCCCGAACCACCATCCGGACCCGGGCAAGCCGGAGAACCTGAAGGACCTGATCGCCAAGGTCAAGGCCGAG
AACGCCGACCTGGGCCTGGCCTTCGACGGCGACGGCGACCGCGTCGGCGTGGTCACCAATACCGGTACCATC
ATCTATCCGGACCGCCTGCTGATGCTGTTCGCCAAGGACGTGGTCTCGCGCAACCCGGGGGCCGACATCATC
TTCGACGTCAAGTGCACCCGCCGTCTGATCGCCCTGATCAGCGGCTACGGCGGCCGTCCGGTGATGTGGAAG
ACCGGCCACTCGCTGATCAAGAAGAAGATGAAGGAAACCGGCGCCCTGCTGGCCGGCGAGATGAGCGGCCAC
GTGTTCTTCAAGGAGCGCTGGTTCGGCTTCGACGATGGCATCTACAGCGCCGCCCGCCTGCTGGAAATCCTC
AGCCAGGACCAGCGCGACAGCGAGCACGTGTTCTCGGCCTTCCCGAGCGACATTTCCACCCCGGAAATCAAC
ATCACCGTCACCGAGGACAGCAAGTTCGCCATCATCGAGGCGCTGCAACGCGACGCCCAATGGGGCGAAGGC
AACATCACCACCCTCGACGGCGTGCGGGTCGACTACCCCAAAGGCTGGGGCCTGGTACGCGCCTCCAACACC
ACTCCCGTGCTGGTCCTGCGCTTCGAAGCGGACACCGAGGAAGAGCTGGAGCGCATCAAGACCGTCTTCCGT
AACCAACTGAAGGCAGTGGATTCCTCGCTGCCCGTGCCCTTCTGA
Translation:
MGDLLEPEKKPRKAASERADGKDLLPGIGASLLGVAAAGALLWFGVFGGAGEAQQRQLDAAWAEGQAGALRQ
ALQQLAADTRAAAASPLALEALQSGDAARIEAAQRSLLAWDGVVDAHLNAPGQATQDNDSPGPVSFAALDIL
HRVESGQNVAAEAYKVGQRWLLYSAAPVRGADQSLQGTLLLAVDLQRLLRALPPLPGDAGQVQLVQQFSGAP
AQVLLQRGMPAPGKGAQALDSGNPNWKLNYTPGSVASTQASPLLLALAALLALLGGILGAYLTRSSLLRRLH
QDVLTLGQYLQELGGQRTAKPPVPSLPGFAPLIQALARQPRRKPEPTSAPSPAKAAPVAVAVAKAPPREEPA
LADPLFQNTDILDIDILDEDQDLLGLEQTPIMSTAKAPTLPASIFRAYDIRGVVGDTLTAETAYWIGRAIGS
ESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGSHNPPD
YNGFKIVVAGETLANEQIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIAMAKPMKVVVDCGNGVAG
VIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTI
IYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKETGALLAGEMSGH
VFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEG
NITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF*
AnnotationID:733GeneID:724
AnnotatorUID: danlee
Modification Date/Time: 2006-03-17 15:03:27
Gene Name:algC
Confidence Code:1
GeneProduct:phosphomannomutase AlgC
Cell Localization:()
Synonyms:pmm
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1109
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:5.4.2.8, 5.4.2.2
Status:ACTIVE
Pathway:
Homology:
gi|84317982|ref|ZP_00966416.1|  COG1109: Phosphomannomutase [Pseudomonas aeruginosa C3719]
Length=868

 Score = 1667 bits (4316),  Expect = 0.0
 Identities = 847/855 (99%), Positives = 848/855 (99%), Gaps = 1/855 (0%)

gi|84323972|ref|ZP_00972037.1|  COG1109: Phosphomannomutase [Pseudomonas aeruginosa 2192]
Length=868

 Score = 1666 bits (4314),  Expect = 0.0
 Identities = 848/855 (99%), Positives = 849/855 (99%), Gaps = 1/855 (0%)

gi|9951640|gb|AAG08707.1|  phosphomannomutase AlgC [Pseudomonas aeruginosa PAO1]
 gi|15600515|ref|NP_254009.1|  phosphomannomutase AlgC [Pseudomonas aeruginosa PAO1]
 gi|12230879|sp|P26276|ALGC_PSEAE  Phosphomannomutase/phosphoglucomutase (PMM / PGM)
Length=463

 Score =  927 bits (2396),  Expect = 0.0
 Identities = 463/463 (100%), Positives = 463/463 (100%), Gaps = 0/463 (0%)

Structural Features:
COG1109, {ManB}, Phosphomannomutase [Carbohydrate transport and metabolism]
CD-Length = 464 residues,  98.3% aligned
Score =  397 bits (1021), Expect = 3e-111
Identities = 165/459 (35%), Positives = 249/459 (54%), Gaps = 15/459 (3%)
Genomic Context:
Comment:
C-terminal half of GID724 (PA14_70270) is 100% identical to entire length of PAO1 PA5322.
NOTE: PAO1 does have an alternate start that would create an 868 aa protein (from 5991168 to 5993774).
ReferenceID:14207
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18593
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34778
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:724_cdd.html
URL:
ReferenceID:35701
Author/Investigator(s): Zielinski NA, Chakrabarty AM, Berry A.
Title: Characterization and regulation of the Pseudomonas aeruginosa algC gene encoding phosphomannomutase.
PubMed: 1903398
MedLine:
Source:
J Biol Chem. 1991 May 25;266(15):9754-63.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1903398
Homologs By Global Alignment
Gene ID:724

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1253 PA5322_tr translation of PA5322 854 54.21 54.21 391 2396.0
47662 gb|AAG08707.1|AE004945_1 (AE004945) phosphomannomutase AlgC [Pseudomonas aeruginosa PAO1] 854 54.21 54.21 391 2396.0
47663 gb|AAA25701.1| (M60873) phosphomannomutase [Pseudomonas aeruginosa] 854 53.86 53.86 391 2378.0
47664 gb|AAO53637.1| (AE016856) phosphomannomutase AlgC [Pseudomonas syringae pv. tomato str. DC3000] 855 42.45 47.60 391 1892.0
47665 gb|AAN70853.1|AE016729_11 (AE016793) phosphomannomutase [Pseudomonas putida KT2440] 854 41.68 47.65 391 1890.0
GC ORFID: 43726How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: psyr_15may02_Scaffold2_revised_gene3934Glimmer Score:
Start: 5527818Stop: 5530382
Length: 2565
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: psyr_15may02_Scaffold2_revised_gene3934 related to: gi|15600515|ref|NP_254009.1| (NC_002516) phosphomannomutase AlgC [Pseudomonas aeruginosa] sp|P26276|ALGC_PSEAE Phosphomannomutase (PMM) pir||H82979 phosphomannomutase AlgC PA5322 [imported] - PseudomonasHomolog Bit Score 1014.0
Other Homologs: t_PA5322 (ORF: BLASTX 927.0), psyr_15may02_Scaffold2_revised_gene3934 (ORF: GLIMMER)
GC ORF Sequence
TTGGGCGACCTGCTCGAACCGGAAAAGAAGCCGCGCAAGGCAGCGTCCGAACGCGCTGACGGCAAGGACCTG
CTGCCCGGCATAGGCGCCAGCCTGCTGGGCGTGGCGGCCGCCGGCGCCCTGCTCTGGTTCGGCGTCTTCGGC
GGCGCCGGTGAGGCACAGCAGCGCCAGTTGGACGCGGCCTGGGCCGAAGGCCAGGCCGGCGCCTTGCGCCAA
GCCTTGCAGCAACTCGCCGCCGACACCCGCGCCGCCGCGGCCAGCCCCCTCGCCCTCGAAGCCCTGCAAAGC
GGCGACGCCGCCCGCATCGAGGCCGCCCAGCGCAGCCTGCTGGCCTGGGACGGCGTGGTCGATGCCCACCTG
AACGCGCCCGGTCAGGCCACCCAGGACAACGACAGCCCCGGCCCGGTCAGCTTCGCCGCCCTGGATATCCTG
CACCGGGTGGAAAGTGGCCAGAACGTCGCCGCCGAAGCCTACAAGGTCGGCCAGCGCTGGCTGCTGTACAGC
GCCGCGCCGGTGCGCGGCGCCGACCAGAGCCTGCAAGGCACGCTGCTGCTGGCGGTCGACCTGCAACGGCTG
CTGCGCGCCCTGCCGCCCTTGCCGGGCGATGCCGGCCAGGTGCAACTGGTCCAGCAGTTCTCCGGCGCACCG
GCCCAGGTGCTGCTGCAACGCGGTATGCCGGCGCCGGGCAAGGGTGCGCAAGCGCTGGACAGCGGCAATCCG
AACTGGAAACTGAACTACACGCCCGGCAGCGTCGCCTCGACCCAGGCCTCGCCGCTGCTGCTGGCACTCGCG
GCGCTGCTGGCCCTGCTCGGCGGCATCCTCGGCGCCTACCTCACCCGTTCGTCGCTGTTGCGCCGCCTGCAC
CAGGATGTCCTGACCCTCGGTCAGTATCTTCAGGAACTCGGCGGGCAACGCACTGCCAAACCCCCTGTGCCT
AGCCTGCCGGGCTTCGCCCCGCTGATCCAGGCATTGGCCCGCCAGCCGCGGCGCAAGCCGGAGCCGACCAGC
GCGCCCAGCCCTGCCAAGGCAGCGCCGGTGGCGGTGGCGGTGGCGAAAGCGCCTCCTCGCGAGGAGCCGGCA
TTGGCAGATCCGTTGTTCCAGAACACCGACATTCTGGATATCGACATTCTCGATGAAGACCAGGACCTCCTG
GGATTGGAGCAAACCCCCATCATGAGCACTGCAAAAGCACCGACGCTGCCCGCCAGCATCTTCCGCGCCTAC
GACATCCGCGGCGTGGTAGGCGATACCCTCACCGCCGAGACCGCCTACTGGATCGGTCGCGCCATCGGCTCG
GAAAGCCTCGCCCGCGGCGAACCGTGCGTCGCTGTCGGCCGCGATGGCCGCCTGTCCGGTCCCGAACTGGTC
AAGCAGCTGATCCAGGGCCTGGTGGACTGCGGTTGCCAGGTCAGCGACGTGGGCATGGTGCCTACCCCGGTG
CTGTACTACGCGGCCAACGTGCTTGAGGGCAAGTCCGGGGTGATGCTGACCGGCAGCCACAACCCGCCGGAC
TACAACGGCTTCAAGATCGTGGTCGCCGGCGAGACCCTGGCCAACGAGCAGATCCAGGCCCTGCGCGAGCGC
ATCGAGAAAAACGACCTGGCATCCGGCGTCGGCAGCGTAGAGCAGGTCGACATCCTGCCGCGCTACTTCAAG
CAGATCCGCGACGACATCGCCATGGCCAAGCCGATGAAGGTGGTGGTCGACTGCGGCAACGGCGTGGCCGGG
GTGATCGCCCCGCAGCTGATCGAGGCCCTGGGCTGCAGCGTGATCCCGCTGTACTGCGAGGTCGACGGCAAC
TTCCCGAACCACCATCCGGACCCGGGCAAGCCGGAGAACCTGAAGGACCTGATCGCCAAGGTCAAGGCCGAG
AACGCCGACCTGGGCCTGGCCTTCGACGGCGACGGCGACCGCGTCGGCGTGGTCACCAATACCGGTACCATC
ATCTATCCGGACCGCCTGCTGATGCTGTTCGCCAAGGACGTGGTCTCGCGCAACCCGGGGGCCGACATCATC
TTCGACGTCAAGTGCACCCGCCGTCTGATCGCCCTGATCAGCGGCTACGGCGGCCGTCCGGTGATGTGGAAG
ACCGGCCACTCGCTGATCAAGAAGAAGATGAAGGAAACCGGCGCCCTGCTGGCCGGCGAGATGAGCGGCCAC
GTGTTCTTCAAGGAGCGCTGGTTCGGCTTCGACGATGGCATCTACAGCGCCGCCCGCCTGCTGGAAATCCTC
AGCCAGGACCAGCGCGACAGCGAGCACGTGTTCTCGGCCTTCCCGAGCGACATTTCCACCCCGGAAATCAAC
ATCACCGTCACCGAGGACAGCAAGTTCGCCATCATCGAGGCGCTGCAACGCGACGCCCAATGGGGCGAAGGC
AACATCACCACCCTCGACGGCGTGCGGGTCGACTACCCCAAAGGCTGGGGCCTGGTACGCGCCTCCAACACC
ACTCCCGTGCTGGTCCTGCGCTTCGAAGCGGACACCGAGGAAGAGCTGGAGCGCATCAAGACCGTCTTCCGT
AACCAACTGAAGGCAGTGGATTCCTCGCTGCCCGTGCCCTTCTGA