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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homolog: gb|AAM27709.1|AF498411_6 (AF498411) ORF_6; similar to UDP-glucose/GDP-mannose dehydrogenase [Pseudomonas aeruginosa] |
Sequence:
ATGTCTTTCGATACTATTTCTGTAATTGGGTTGGGTTATATTGGTTTACCTACAGCTGCCGTTTTTGCTTCT
CGTAGAAAACAAGTGATAGGGGTCGATGTAAACTCCAAAGCAGTTGAAACTATCAACCAGGGAAAGATTCAT
ATCGTTGAACCGGACTTGGATATGCTCGTCCATGCGGCTGTGACTAATGGGTACTTACGAGCAGTTTCTGTA
CCTGAGCCTGCTGATGCATTTTTGATCGCCGTGCCCACCCCGTTTAAGGAGCAACATGAACCGGACTTGCGA
TACATTGAGTCAGCGTGCAAGGCAATTGCCCCTGTATTGAAAGCGGGCGATTTGGTAATTCTGGAGTCGACA
TCACCGGTTGGCGCAACCGAGCAAATGTCTGCGTGGCTGTCTGCTGAACGTCCAGATCTAACGTTCCCCCAG
AGTCACGGAGATGCTTCTGATATACGTATTGCTCACTGCCCTGAGCGAGTCTTGCCTGGACATGTATTACGT
GAATTGGTTCAGAATGATCGTGTAATTGGCGGTATGACCGCTACATGCTCGGCGGCGGCAGCTTCTTTATAT
AAGATATTTGTGGAGGGGGAGTGTGTAATTACTAATGCCCGTACCGCTGAAATGTGCAAGCTAACGGAAAAC
AGCTTCCGTGACACTAACATTGCTTTTGCAAATGAGCTTTCCATTATCTGTGACAAGTTGGACATCAATGTA
TGGGAGCTGATCCGACTCGCTAATCGTCACCCGCGAGTCAATATTCTCCAGCCAGGGCCGGGAGTGGGGGGG
CATTGCATCGCAGTCGATCCTTGGTTCATCGTAAGTAAGACCCCTGGAGAGGCTCGCTTGATTCGAACTGCC
CGTGAAGTCAATGATGGAAAGCCTTTGTGGGTTCTGAACAAGATTAAAATGGCTGTCGCGGAGTTTCTGCAA
GCGAATCCGGAAAGAACTGCGAAGGATGTAACTATTGCGTGCTTCGGCCTGGCATTTAAGCCTGATATCGAT
GATCTTCGTGAGAGTCCAGCTGTTTCTATTGCTCAGAATGTTAAGATGTCTCACCCCGGTACTGTCTTGGTT
GTGGAGCCTAACATTGCTGAATTGCCCGAAAAGCTGGCTGAGAGATTAGATCTGGTATCTATTAACTCTGCT
CTTGAGAGATCAGAAGTGATAGTCCTACTGGTTGATCACAAAGAGTTTAAAGAGTTTTCTCCATGTGATCTC
GGTGCTTATAAAGTAATTGATACCAGAGGTGTTTGGAACGCTTAA |
Translation:
MSFDTISVIGLGYIGLPTAAVFASRRKQVIGVDVNSKAVETINQGKIHIVEPDLDMLVHAAVTNGYLRAVSV
PEPADAFLIAVPTPFKEQHEPDLRYIESACKAIAPVLKAGDLVILESTSPVGATEQMSAWLSAERPDLTFPQ
SHGDASDIRIAHCPERVLPGHVLRELVQNDRVIGGMTATCSAAAASLYKIFVEGECVITNARTAEMCKLTEN
SFRDTNIAFANELSIICDKLDINVWELIRLANRHPRVNILQPGPGVGGHCIAVDPWFIVSKTPGEARLIRTA
REVNDGKPLWVLNKIKMAVAEFLQANPERTAKDVTIACFGLAFKPDIDDLRESPAVSIAQNVKMSHPGTVLV
VEPNIAELPEKLAERLDLVSINSALERSEVIVLLVDHKEFKEFSPCDLGAYKVIDTRGVWNA* |
AnnotationID:7246 | GeneID:7236 |
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Modification Date/Time: |
2005-10-14 12:12:47 |
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GeneProduct: | similar to UDP-glucose/GDP-mannose dehydrogenase |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (7) Cell wall / LPS / capsule |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | putative enzyme |
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Homology: | gi|20559946|gb|AAM27709.1| ORF_6; similar to UDP-glucose/GDP-mannose dehydrogenase [Pseudomonas
aeruginosa]
gi|20559779|gb|AAM27558.1| ORF_6; similar to UDP-glucose/GDP-mannose dehydrogenase [Pseudomonas
aeruginosa]
Length=422
Score = 839 bits (2167), Expect = 0.0
Identities = 422/422 (100%), Positives = 422/422 (100%), Gaps = 0/422 (0%)
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Structural Features: | COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane].
CD-Length = 436 residues, 95.0% aligned
Score = 519 bits (1338), Expect = 3e-148
COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane].
CD-Length = 414 residues, 98.6% aligned
Score = 232 bits (594), Expect = 6e-62
pfam03721, UDPG_MGDP_dh_N, UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain.
CD-Length = 192 residues, 99.5% aligned
Score = 198 bits (505), Expect = 1e-51 |
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Genomic Context: | Part of variable O-antigen biosynthetic locus in P. aeruginosa.
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Comment: | Identical to the variant of ORF_6 found in P. aeruginosa serotypes 010 and 019.
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ReferenceID:38217 |
Author/Investigator(s): |
Raymond,C.K., Sims,E.H., Kas,A., Spencer,D.H., Kutyavin,T.V., Ivey,R.G., Zhou,Y., Kaul,R., Clendenning,J.B. and Olson,M.V. |
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Title: |
Genetic variation at the O-antigen biosynthetic locus in Pseudomonas aeruginosa |
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Source: | J. Bacteriol. 184 (13), 3614-3622 (2002)
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