ViewGene
Locus Name:
GeneID:
Location:

GeneID:7235
TrivialName: PA14_23390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23390
PAO1 Ortholog Locus:
Sequence Length:1263
Protein Length:420
Start: 2030647
Stop: 2031909
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homolog: gb|AAM27710.1|AF498411_7 (AF498411) ORF_7; similar to Polysaccharide biosynthesis protein; potential multiple membrane spanning domains. [Pseudomonas aeruginosa]
Sequence:
ATGTTAGTGAAGCTTAATGAAAACTCTGTAAACGCTTTGTCTTTAGTTGCAATACAGGGCGCAAATGCACTG
CTTCCATTGTTAGCTTTCCCATATTTGTTTGGCGTATTAGAACAGGGTGCTTTTGCGAGGCTAGTAGTGGCT
GAAGCATTAGCTTTTTATGTTTTGACTGTGTGTCTTTATAGTTTTGATATAAGTGGCGTTCAAGTAATAGTC
GATGCGAAAGAGGAAAGAGAGGTAGAAGCAAAGTTTTTTTTCAATATATTTGCTGCTAGGGTTGGATTATTA
ATTTTTTCTTCTGTTTTTTTGGTTGGAGGTGGATATCTATTTTGGGGCGCCGATGTGTTGTTGGTAGTTATA
TGGCTTTTTTTTGTTTTGGGTATGATTCTTCAGTCTAATTATTACTTCCAAGCAGTTGAAAATAACTGGTTG
CTGGCAACATTTGTAGTCTCTTCAAGAGTTACTGCGGTTTTAGCCGTCTATGTCTTTGTACATAAGGGGACG
GATGTTTTTCTTGCTTCCATCATATTGGCAGGTAGCTTTTTAGTTTCAGGGGGAGCGGTATTTGGAGTTCTA
CTTACTCGTTTTGGTTTGAGTGAATTTAAGAGGATTAGAGGTGATGTTGTTGTCTCATTACTGTGGAGTGGT
CGTCATCTGTTTCTAGGGAACTTATCAGTTACTTTATTTCGTGGTGCAAATGTTTTAATTTTGGCTGGTGTT
TCAAATAGTGCTGCTGTTGCAGTTTATGCACTCTCCGAGAAAATAATTAAAAGTACTCAAGCACTAGCGAGG
CCATTGAATCAGTTATTTTTGCCAAAAGTTGTAAAAGCTTGGGCCTCTCTCTCTGAACGGGAAAGAAACAAC
GCCTTTGCTTTTAGACTTGTCTGGAAAAATACATATGCTCAAGTATTGCTTATGGTTTTCTTTCTTCCGGTT
TTTATCTTTCTCTTATATTTCTGTTGGGTTTTAGGAGTGATTCCGGGTTTTAGTGAGAAAGTTTTCTTTCTA
ATTGTATTGATGTCGCCAGCCGTGATTTTTGGTGTTGCTAATTCTATGTTTGGTGCAGTAGGGCTGAGTTTA
ATCGGAGGGCAAACCTACTTTGCTTATTCTGTTTCTATCATTGGGGTTTGTGCTTTTTTGATTTCCCTGGTT
ATGTCTTATCTTCTCTCTGATACCGGGGCTGCGATGACTTTTGTGCTGGCGGAGGCTTTGCTTTTATTTGCC
TTTCTCTGTAAATATCGTGGGAAGCCAAGACATGGATGA
Translation:
MLVKLNENSVNALSLVAIQGANALLPLLAFPYLFGVLEQGAFARLVVAEALAFYVLTVCLYSFDISGVQVIV
DAKEEREVEAKFFFNIFAARVGLLIFSSVFLVGGGYLFWGADVLLVVIWLFFVLGMILQSNYYFQAVENNWL
LATFVVSSRVTAVLAVYVFVHKGTDVFLASIILAGSFLVSGGAVFGVLLTRFGLSEFKRIRGDVVVSLLWSG
RHLFLGNLSVTLFRGANVLILAGVSNSAAVAVYALSEKIIKSTQALARPLNQLFLPKVVKAWASLSERERNN
AFAFRLVWKNTYAQVLLMVFFLPVFIFLLYFCWVLGVIPGFSEKVFFLIVLMSPAVIFGVANSMFGAVGLSL
IGGQTYFAYSVSIIGVCAFLISLVMSYLLSDTGAAMTFVLAEALLLFAFLCKYRGKPRHG*
AnnotationID:7247GeneID:7235
AnnotatorUID: danlee
Modification Date/Time: 2005-10-14 12:12:25
Gene Name:ORF_7
Confidence Code:3
GeneProduct:similar to Polysaccharide biosynthesis protein
Cell Localization:()
Synonyms:orfE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|20559947|gb|AAM27710.1|  ORF_7; similar to Polysaccharide biosynthesis protein; potential multiple 
membrane spanning domains. [Pseudomonas aeruginosa]
gi|20559780|gb|AAM27559.1|  ORF_7; similar to Polysaccharide biosynthesis protein; potential multiple 
membrane spanning domains. [Pseudomonas aeruginosa]
     Length=420
     Score =  808 bits (2088),  Expect = 0.0
     Identities = 420/420 (100%), Positives = 420/420 (100%), Gaps = 0/420 (0%)






 
Structural Features:
pfam01943, Polysacc_synt, Polysaccharide biosynthesis protein. Members of this family are integral membrane proteins. 
             CD-Length = 272 residues,  87.5% aligned
             Score = 43.7 bits (103), Expect = 4e-05






   
Genomic Context:






   
Comment:
Identical to the variant of  ORF_7 found in P. aeruginosa serotypes 010 and 019.



















    ReferenceID:38218




  
Author/Investigator(s):
        Raymond,C.K., Sims,E.H., Kas,A., Spencer,D.H., Kutyavin,T.V., Ivey,R.G., Zhou,Y., Kaul,R., Clendenning,J.B. and Olson,M.V.





  
Title:
        Genetic variation at the O-antigen biosynthetic locus in Pseudomonas aeruginosa




  
PubMed:
        12057956


MedLine:
        




    
Source:
J. Bacteriol. 184 (13), 3614-3622 (2002)







    
Reference Type:Journal 







    
Data:


    		




 
URL: