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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homolog: gb|AAM27716.1|AF498411_13 (AF498411) ORF_13; similar to NAD dependent epimerase/dehydratase family [Pseudomonas aeruginosa] |
Sequence:
ATGAGAGTCTTTCTTACTGGTATAACGGGCTTTGTTGGGCTTGCTACTTCAAAGCGTCTACTGCAAGAGGGG
CATTGTGTGCGAGCGGCAGTGCGTGATGCCAATCCAGCGCTTGCGCAAGAAGTTGAGCAGGTTGTTTTTGGG
AATTTGGTAAAGCACGACTGGGCTTCTTCGCTTGAGGGGCAAGAGGTAGTGATACACTGTGCTGCTCGTGTT
CATGTGATGAAGGATGCATCCCGCGACCCTTTGAGTGAGTTTCGACGGGTCAATGTTGAGGGTACCCTAAAT
CTAGCGCGCCAGGCGGCGAAAGCTGGCGTCAAGAGGTTTGTTTTCATTAGCTCAATAAAGGTCAATGGTGAA
AGTACTAGACTGGGTGTTCCTTATACCGCTGATGATATTGCCATGCCGCTTGATCCATATGGCGTTTCCAAA
CTTGAGGCTGAACAGAAGCTGCTCTCTCTAGCCGCTCGGGTTGACATGGAAGTGAGCATAATACGGCCGGTT
TTGGTATATGGGCCAGGTGTAAAGGCGAATTTTTTGAGCATGATGGAATGGCTGAAAAAAGGAATGCCATTG
CCTCTTGGCGCTATTGATAATAAGCGTAGTCTGGTTGCGTTGGACAATCTGGTTGATCTTATTCTCACTTGT
ATGAAACATCCGGCTGCCGCAAATCAGATATTTCTCGTCAGCGACGATGAGGATCTTTCCACCACAGAATTA
TTGCGGCGTACCGGCAAAGCGATGGGGCGTCCAGCCAGGTTGATACCCATTCCATCTCGGTTTCTCGGTTTT
TCCGCTCGCTTGCTCGGTAAGCCGGCTATTGTGCAGCGTCTGTGCGAGTCGCTACAGGTCGATATTGAAAAG
ACTCGAGACCTGTTAGGCTGGCAGCCTCCTGTCAGCGTAGATGAAGCCTTGCATAAGACTGTGCATCACTTC
TTGGAGCATCAACAATAA |
Translation:
MRVFLTGITGFVGLATSKRLLQEGHCVRAAVRDANPALAQEVEQVVFGNLVKHDWASSLEGQEVVIHCAARV
HVMKDASRDPLSEFRRVNVEGTLNLARQAAKAGVKRFVFISSIKVNGESTRLGVPYTADDIAMPLDPYGVSK
LEAEQKLLSLAARVDMEVSIIRPVLVYGPGVKANFLSMMEWLKKGMPLPLGAIDNKRSLVALDNLVDLILTC
MKHPAAANQIFLVSDDEDLSTTELLRRTGKAMGRPARLIPIPSRFLGFSARLLGKPAIVQRLCESLQVDIEK
TRDLLGWQPPVSVDEALHKTVHHFLEHQQ* |
AnnotationID:7250 | GeneID:7233 |
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Modification Date/Time: |
2005-10-14 13:01:44 |
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GeneProduct: | similar to NAD dependent epimerase/dehydratase family |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (7) Cell wall / LPS / capsule |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | putative enzyme |
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Homology: | gi|20559953|gb|AAM27716.1| ORF_13; similar to NAD dependent epimerase/dehydratase family
[Pseudomonas aeruginosa]
gi|20559786|gb|AAM27565.1| ORF_13; similar to NAD dependent epimerase/dehydratase family
[Pseudomonas aeruginosa]
Length=317
Score = 623 bits (1606), Expect = 3e-177
Identities = 317/317 (100%), Positives = 317/317 (100%), Gaps = 0/317 (0%) |
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Structural Features: | COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer
membrane / Carbohydrate transport and metabolism].
CD-Length = 314 residues, 99.7% aligned
Score = 174 bits (441), Expect = 1e-44
pfam01370, Epimerase, NAD dependent epimerase/dehydratase family.
CD-Length = 310 residues, 100.0% aligned
Score = 125 bits (316), Expect = 7e-30 |
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Genomic Context: | Part of variable O-antigen biosynthetic locus in P. aeruginosa.
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Comment: | Identical to ORF_13 found in P. aeruginosa serotypes 010 and 019.
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ReferenceID:38221 |
Author/Investigator(s): |
Raymond,C.K., Sims,E.H., Kas,A., Spencer,D.H., Kutyavin,T.V., Ivey,R.G., Zhou,Y., Kaul,R., Clendenning,J.B. and Olson,M.V. |
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Title: |
Genetic variation at the O-antigen biosynthetic locus in Pseudomonas aeruginosa |
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Source: | J. Bacteriol. 184 (13), 3614-3622 (2002)
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