ViewGene
Locus Name:
GeneID:
Location:

GeneID:7232
TrivialName: PA14_23440
AnnotatorUID: danlee
Modification Date/Time:2006-06-28 16:04:07
LocusName:PA14_23440
PAO1 Ortholog Locus:
Sequence Length:1113
Protein Length:370
Start: 2038087
Stop: 2039199
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homolog: gb|AAM27715.1|AF498411_12 (AF498411) ORF_12; similar to Glycosyl transferases group 1 [Pseudomonas aeruginosa]
Sequence:
gtgagtgccctgcttggggcgcttccagaaaactcgcagttagaagttattactactcaacctaaccgttat
agtagtttttcacttgaagctccattgctcgaaaagcactcgcgactaattattcatcggattcctattttt
cagcataatagtgggatgttagaccagtcgcgtgcatttttcagctacctcaagggcgttcttggtatcact
cgtaataaggattatgatgtggtatatgcaacttcctctcggttgatgacggcttctcttggtgccttggtg
gcgaggcaattgcgatgtcctctgtatttggatattcgagatatcttcgtcgatacaattaaggatgtgttg
ccaagtcggataagtttctttgtaaagcctattttctcaatgatggagcgtatcactgttcgaactgctacc
cgagttaatctggtctctgcaggttttctgccttacttcaactcgcgttaccctggtggtgattttgttgta
tttacaaatggaattgatgatgagtttgtcaaggtgcagacttcttgtgagcgtgaagaaagctctagtctg
tatacggtgctttacgcaggtaatatgggcgagggccagggactccatttgattattcctcagattgcccgg
catttcgacggccatttgaggttcctctgtatcggtgatggaggaagaagaaagcagttacaagatgccatt
gaagaggctggttgcaccaatgttgagataacatctcctgttccccgtagtgagttgatcgcagcctatcag
aaagcagatgttctatttttgcacctaaatgattacgatgctttccgaaaagttcttccctcgaagattttt
gagtatgccgccttgggaaaacctatttgggctggagtggccggttattcagcggggtttattcaggatttt
atttcgaatgctgcggtctttaggccttgtaatgtcgaagatgcgataaaggcattttcttctttgtccatg
gtgacaaaacctcggaaagagtttgtcgaacgcttcgcacgcgaaaagatcatgaaagcactagcggaggat
attatctttgtggttcgcggtgaggtgaaatga
Translation:
MSALLGALPENSQLEVITTQPNRYSSFSLEAPLLEKHSRLIIHRIPIFQHNSGMLDQSRAFFSYLKGVLGIT
RNKDYDVVYATSSRLMTASLGALVARQLRCPLYLDIRDIFVDTIKDVLPSRISFFVKPIFSMMERITVRTAT
RVNLVSAGFLPYFNSRYPGGDFVVFTNGIDDEFVKVQTSCEREESSSLYTVLYAGNMGEGQGLHLIIPQIAR
HFDGHLRFLCIGDGGRRKQLQDAIEEAGCTNVEITSPVPRSELIAAYQKADVLFLHLNDYDAFRKVLPSKIF
EYAALGKPIWAGVAGYSAGFIQDFISNAAVFRPCNVEDAIKAFSSLSMVTKPRKEFVERFAREKIMKALAED
IIFVVRGEVK*
AnnotationID:7213GeneID:7232
AnnotatorUID: danlee
Modification Date/Time: 2006-06-28 15:03:58
Gene Name:ORF_12
Confidence Code:3
GeneProduct:similar to Glycosyl transferases group 1
Cell Localization:()
Synonyms:orfL
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0438
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|20559952|gb|AAM27715.1|  ORF_12; similar to Glycosyl transferases group 1 
[Pseudomonas aeruginosa]
 gi|20559785|gb|AAM27564.1|  ORF_12; similar to Glycosyl transferases group 1 
[Pseudomonas aeruginosa]
Length=370

 Score =  728 bits (1880),  Expect = 0.0
 Identities = 369/370 (99%), Positives = 370/370 (100%), Gaps = 0/370 (0%)gi|20559785|gb|AAM27564.1|  
ORF_12; similar to Glycosyl transferases group 1 [Pseudomonas aeruginosa]
    Length=370
Score =  728 bits (1880),  Expect = 0.0
Identities = 369/370 (99%), Positives = 370/370 (100%), Gaps = 0/370 (0%)






 
Structural Features:
COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane].
CD Length: 381,  Pct. Aligned: 89.501312,  Bit Score: 79.293386,  E-value: 7e-16

pfam00534, Glycos_transf_1, Glycosyl transferases group 1.
CD Length: 172,  Pct. Aligned: 88.953488,  Bit Score: 57.260335,  E-value: 3e-9






   
Genomic Context:
Part of variable O-antigen biosynthetic locus in P. aeruginosa.







   
Comment:


















    ReferenceID:38220




  
Author/Investigator(s):
        Raymond,C.K., Sims,E.H., Kas,A., Spencer,D.H., Kutyavin,T.V., Ivey,R.G., Zhou,Y., Kaul,R., Clendenning,J.B. and Olson,M.V.





  
Title:
        Genetic variation at the O-antigen biosynthetic locus in Pseudomonas aeruginosa




  
PubMed:
        12057956


MedLine:
        




    
Source:
J. Bacteriol. 184 (13), 3614-3622 (2002)







    
Reference Type:Journal 







    
Data:


    		




 
URL: