ViewGene
Locus Name:
GeneID:
Location:

GeneID:722
TrivialName: PA14_01670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01670
PAO1 Ortholog Locus:PA0136
Sequence Length:1572
Protein Length:523
Start: 152381
Stop: 153952
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03526.1|AE004451_7 (AE004451) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 521/523 (99%), Positives = 522/523 (99%)
Sequence:
ATGTCCGCACCTTCCTCCTTCGCGCCGCCGCGCCTCGAACTACGCGGGATCAGCAAGCGCTATCCGGGTTGC
CTGGCCAACGACCGCATCGACCTGTGCATCGACGCCGGCGAGATCCACGCCCTGCTCGGTGAGAACGGCGCC
GGCAAGAGCACGCTGATGAAGATCATCTACGGCGTGACCCGTCCCGATGCCGGCGAGATCCGCTGGCAGGGC
GAGCCGGTGCAGGTGCGCGACCCGGCTCGCGCCCGGGCGCTGGGGATCGGCATGGTGTTCCAGCATTTCTCC
CTGTTCGAGACGCTCAGCGTGGCGGAGAACATTGCGCTCGCCCTCGGCACCGAGGCGGGCAGCCCGCGCCGG
TTGGAGGCGCGTATTCGCGAGGTGTCGCAGCGCTACGGCATGCCGCTGGAGCCTCGCCGGCTGGTCCATGGG
CTGTCCATCGGCGAGCGCCAGCGGGTGGAGATCGTGCGCTGCCTGATGCAGGACATCCGCCTGCTGATCCTC
GACGAGCCGACCTCGGTGCTGACCCCGCGCGAGGCCGAGGATCTCTTCGTCACCCTGCGCCGTCTTGCGGAG
GAGGGTTGCAGTGTCCTCTTCATCAGCCACAAGCTGGCCGAGGTCCGTGCGCTCTGCCAGCGCGCCACGGTG
CTGCGCGGCGGACGGGTGGCCGGACAGTGCGTGCCGGCGCAATGTTCCGATCTCGAGCTGGCGCGGCTGATG
GTGGGCGACGCCGAGGGCCTGGCGGCGGAGTATCCGAAGGTTACCGGCGGCGCGCCTTTCCTCCAGGTGCGC
GACCTGCACTGGCGCAACCCGGACCCCTTCGGCGTGTCCTTCGCCGGCCTCGACCTGGAGGTGCGCAGCGGC
GAGATCCTCGGTATCGCCGGGGTCGCCGGCAATGGCCAGGACGAGTTGCTTGCCCTGCTCAGCGGCGAAGTG
CGCCTGCCGCGCGCCCAGGCCGAGCGCATCCGCCTCGGCGGCTGCGCCGGCGCGCACCTGGCGCCGGATGCG
CGGCGCCGCGCCGGCCAGGCCTTCGTGCCCGCCGAGCGGCTGGGGCACGGCGCGGTGCCGGAGATGAGCCTG
GCGGACAATGCGCTGCTCACCGCCTTCCAGCAGGGACTGGTGAAGCGCGGGTTGGTCCGGCGGCGCAAGGTG
CTGGCGCTGGCCGAGGAGATCATCCGCCGTTTCGCCGTGAAGGCCCCGGGTGCCGGGGCGCCGGCACGCAGC
CTTTCCGGCGGCAACCTGCAGAAGTTCATCCTCGGCCGCGAGATCCTCCAGGCCCCGCGCCTGCTGGTGGCG
GCGCATCCCACCTGGGGCGTGGACGTCGGCGCGGCGGCGCTGATCCACCGCGCGCTGATTGCCTTGCGCGAT
GCCGGTACGGCGATCCTGGTGGTCTCCGAGGACCTCGACGAGCTGTTCCTGCTCAGCGACCGCATCGCCGCG
CTGTGTTCGGGTCGGCTGTGCCCGGCGGTCGCCACCGCGAGCGCTTCGCCGCAGCAGGTCGGCGGCTGGATG
GCCGGTCAATTCGAGGCGCCGGCGGCGGTCGCCGGCGCCGTTGCCCAAGGGAGCCTGTGA
Translation:
MSAPSSFAPPRLELRGISKRYPGCLANDRIDLCIDAGEIHALLGENGAGKSTLMKIIYGVTRPDAGEIRWQG
EPVQVRDPARARALGIGMVFQHFSLFETLSVAENIALALGTEAGSPRRLEARIREVSQRYGMPLEPRRLVHG
LSIGERQRVEIVRCLMQDIRLLILDEPTSVLTPREAEDLFVTLRRLAEEGCSVLFISHKLAEVRALCQRATV
LRGGRVAGQCVPAQCSDLELARLMVGDAEGLAAEYPKVTGGAPFLQVRDLHWRNPDPFGVSFAGLDLEVRSG
EILGIAGVAGNGQDELLALLSGEVRLPRAQAERIRLGGCAGAHLAPDARRRAGQAFVPAERLGHGAVPEMSL
ADNALLTAFQQGLVKRGLVRRRKVLALAEEIIRRFAVKAPGAGAPARSLSGGNLQKFILGREILQAPRLLVA
AHPTWGVDVGAAALIHRALIALRDAGTAILVVSEDLDELFLLSDRIAALCSGRLCPAVATASASPQQVGGWM
AGQFEAPAAVAGAVAQGSL*
AnnotationID:731GeneID:722
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 05:05:50
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ABC transporter
Cell Localization:()
Synonyms:PA0136
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3845,COG1129
Secondary Functional Category(ies):carbon compond metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54311.1| (AE016858) ABC transporter, ATP-binding protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 517

 Score =  756 bits (1952), Expect = 0.0
 Identities = 384/501 (76%), Positives = 425/501 (84%)

>gb|AAK50327.1|U66917_96 (U66917) putative-ATP binding domain of ABC transporter
           [Pseudomonas sp. ADP]
          Length = 540

 Score =  546 bits (1408), Expect = e-155
 Identities = 299/510 (58%), Positives = 366/510 (71%), Gaps = 7/510 (1%)






 
Structural Features:
COG3845, COG3845, ABC-type uncharacterized transport systems, 
ATPase components
CD-Length = 501 residues, 100.0% aligned
Score =  613 bits (1583), Expect = 1e-176
Identities = 255/505 (50%), Positives = 335/505 (66%), Gaps = 10/505 (1%)

COG1129, MglA, ABC-type sugar transport system, ATPase component 
[Carbohydrate transport and metabolism]
CD-Length = 500 residues, 100.0% aligned
Score =  430 bits (1108), Expect = 2e-121
Identities = 222/512 (43%), Positives = 289/512 (56%), Gaps = 20/512 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1447




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18589




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33509




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:722_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:722
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1249
                           PA0136_tr
                           translation of PA0136
                           523
                           99.61
                           99.80
                           0
                           2625.0
     

     
     
47566
                           gb|AAG03526.1|AE004451_7
                           (AE004451) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           523
                           99.61
                           99.80
                           0
                           2625.0
     

     
     
47567
                           gb|AAO54311.1|
                           (AE016858) ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           527
                           73.62
                           81.59
                           14
                           1943.0
     

     
     
47568
                           gb|AAK50327.1|U66917_96
                           (U66917) putative-ATP binding domain of ABC transporter [Pseudomonas sp. ADP]
                           549
                           55.37
                           67.75
                           35
                           1412.0
     

     
     
47569
                           emb|CAD15880.1|
                           (AL646068) PROBABLE SUGAR ATP BINDING ABC TRANSPORTER PROTEIN [Ralstonia solanacearum]
                           529
                           52.93
                           67.10
                           27
                           1323.0
     

     






      

          
GC ORFID: 43724How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0136Glimmer Score: 

          
Start: 5953720Stop: 5955291

          
Length: 1572


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0136 translation of PA0136Homolog Bit Score 1015.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3591 (ORF: BLASTX 754.0), t_PA1947 (ORF: BLASTX 276.0), t_PA0136 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGCACCTTCCTCCTTCGCGCCGCCGCGCCTCGAACTACGCGGGATCAGCAAGCGCTATCCGGGTTGC 
CTGGCCAACGACCGCATCGACCTGTGCATCGACGCCGGCGAGATCCACGCCCTGCTCGGTGAGAACGGCGCC 
GGCAAGAGCACGCTGATGAAGATCATCTACGGCGTGACCCGTCCCGATGCCGGCGAGATCCGCTGGCAGGGC 
GAGCCGGTGCAGGTGCGCGACCCGGCTCGCGCCCGGGCGCTGGGGATCGGCATGGTGTTCCAGCATTTCTCC 
CTGTTCGAGACGCTCAGCGTGGCGGAGAACATTGCGCTCGCCCTCGGCACCGAGGCGGGCAGCCCGCGCCGG 
TTGGAGGCGCGTATTCGCGAGGTGTCGCAGCGCTACGGCATGCCGCTGGAGCCTCGCCGGCTGGTCCATGGG 
CTGTCCATCGGCGAGCGCCAGCGGGTGGAGATCGTGCGCTGCCTGATGCAGGACATCCGCCTGCTGATCCTC 
GACGAGCCGACCTCGGTGCTGACCCCGCGCGAGGCCGAGGATCTCTTCGTCACCCTGCGCCGTCTTGCGGAG 
GAGGGTTGCAGTGTCCTCTTCATCAGCCACAAGCTGGCCGAGGTCCGTGCGCTCTGCCAGCGCGCCACGGTG 
CTGCGCGGCGGACGGGTGGCCGGACAGTGCGTGCCGGCGCAATGTTCCGATCTCGAGCTGGCGCGGCTGATG 
GTGGGCGACGCCGAGGGCCTGGCGGCGGAGTATCCGAAGGTTACCGGCGGCGCGCCTTTCCTCCAGGTGCGC 
GACCTGCACTGGCGCAACCCGGACCCCTTCGGCGTGTCCTTCGCCGGCCTCGACCTGGAGGTGCGCAGCGGC 
GAGATCCTCGGTATCGCCGGGGTCGCCGGCAATGGCCAGGACGAGTTGCTTGCCCTGCTCAGCGGCGAAGTG 
CGCCTGCCGCGCGCCCAGGCCGAGCGCATCCGCCTCGGCGGCTGCGCCGGCGCGCACCTGGCGCCGGATGCG 
CGGCGCCGCGCCGGCCAGGCCTTCGTGCCCGCCGAGCGGCTGGGGCACGGCGCGGTGCCGGAGATGAGCCTG 
GCGGACAATGCGCTGCTCACCGCCTTCCAGCAGGGACTGGTGAAGCGCGGGTTGGTCCGGCGGCGCAAGGTG 
CTGGCGCTGGCCGAGGAGATCATCCGCCGTTTCGCCGTGAAGGCCCCGGGTGCCGGGGCGCCGGCACGCAGC 
CTTTCCGGCGGCAACCTGCAGAAGTTCATCCTCGGCCGCGAGATCCTCCAGGCCCCGCGCCTGCTGGTGGCG 
GCGCATCCCACCTGGGGCGTGGACGTCGGCGCGGCGGCGCTGATCCACCGCGCGCTGATTGCCTTGCGCGAT 
GCCGGTACGGCGATCCTGGTGGTCTCCGAGGACCTCGACGAGCTGTTCCTGCTCAGCGACCGCATCGCCGCG 
CTGTGTTCGGGTCGGCTGTGCCCGGCGGTCGCCACCGCGAGCGCTTCGCCGCAGCAGGTCGGCGGCTGGATG 
GCCGGTCAATTCGAGGCGCCGGCGGCGGTCGCCGGCGCCGTTGCCCAAGGGAGCCTGTGA