ViewGene

Locus Name:
GeneID:
Location:

GeneID:7218
TrivialName: PA14_55090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55090
PAO1 Ortholog Locus:
Sequence Length:399
Protein Length:132
Start: 4894348
Stop: 4894746
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
TTGTCGCAAGGGTTCTACCCAGTCAGCCTGAACTGCATTGCTCGCTTGATGTCCGCAAAGAGAATTCAAGGA
TGGTCACGTCGGAAGAAGCCCGGCTTTGGTAGAGTTTCCTCTGGTCGCCCAACTGGCGTGAAAAATCTACTG
GAGCGCGACTTCACCGCCCTGGAGCCGAAGCGCAAGTGGCTCACCGACATCACGGAAGCCGCCACCTTTGAG
GGCAGACTATTCCTGCGCGTGGTGCTCGACCTGTACAGCAAGCTGGTGATTGGCTGGTCGATGCATCATCGT
CAGGATCGGCAGATGACGACCCGAGCGGTGGGAATGGCAATCTGGCAACGCCAGGGCGATTGGTCAGTAATA
CTGCCTTCGGATCGTGGCAGCCATCACCAGTGCTGCTGA
Translation:
MSQGFYPVSLNCIARLMSAKRIQGWSRRKKPGFGRVSSGRPTGVKNLLERDFTALEPKRKWLTDITEAATFE
GRLFLRVVLDLYSKLVIGWSMHHRQDRQMTTRAVGMAIWQRQGDWSVILPSDRGSHHQCC*
AnnotationID:7224GeneID:7218
AnnotatorUID: danlee
Modification Date/Time: 2005-10-06 12:12:58
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|56179332|gb|AAV82054.1|  Transposase Tra5 related protein [Idiomarina loihiensis L2TR]
     Length=380
     Score =  155 bits (391),  Expect = 5e-37
     Identities = 76/120 (63%), Positives = 91/120 (75%), Gaps = 1/120 (0%)

gi|67980282|gb|EAM69809.1|  Integrase, catalytic region [Desulfuromonas acetoxidans DSM 684]
     Length=269
     Score =  146 bits (369),  Expect = 2e-34
     Identities = 74/119 (62%), Positives = 89/119 (74%), Gaps = 0/119 (0%)

Structural Features:
pfam00665, rve, Integrase core domain.
             CD-Length = 160 residues, only  48.8% aligned
             Score = 42.4 bits (99), Expect = 2e-05

COG2801, Tra5, Transposase and inactivated derivatives [DNA replication, recombination, and repair].
             CD-Length = 232 residues, only  43.1% aligned
             Score = 35.3 bits (79), Expect = 0.003
Genomic Context:
Comment: