ViewGene

Locus Name:
GeneID:
Location:

GeneID:720
TrivialName: PA14_18510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18510
PAO1 Ortholog Locus:PA3544
Sequence Length:1473
Protein Length:490
Start: 1589684
Stop: 1588212
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06932.1|AE004775_3 (AE004775) Alginate production outer membrane protein AlgE precursor [Pseudomonas aeruginosa PAO1]
Identities = 489/490 (99%), Positives = 490/490 (100%)
Sequence:
ATGAACAGCTCCCGTTCCGTCAACCCGCGGCCGTCCTTCGCGCCGCGCGCCCTGTCCCTGGCCATCGCCCTG
CTGCTCGGCGCGCCGGCGTTCGCCGCCAACAGCGGCGAGGCGCCGAAGAACTTCGGCCTGGACGTGAAGATC
ACCGGCGAATCGGAAAACGATCGCGACCTCGGCACCGCTCCCGGCGGCACCCTCAACGACATCGGTATCGAC
CTGCGGCCCTGGGCCTTCGGCCAGTGGGGCGACTGGAGCGCCTACTTCATGGGCCAGGCGGTGGCCGCCACC
GACACCATCGAGACCGACACCCTGCAATCGGACACCGACGACGGCAACAACAGCCGCAACGACGGTCGCGAG
CCGGACAAGAGCTACCTCGCCGCACGCGAATTCTGGGTCGACTACGCCGGCCTCACCGCCTACCCCGGCGAG
CACCTGCGCTTCGGCCGCCAGCGCCTGCGGGAAGACAGCGGCCAGTGGCAGGACACCAACATCGAGGCGCTG
AACTGGAGCTTCGAGACCACCCTGCTCAACGCCCATGCCGGGGTCGCCCAGCGTTTCAACGAATACCGCACC
GACCTCGACGAACTGGCTCCGGAGGACAAGGACCGCACCCATGTGTTCGGCGACATCTCCACCCAGTGGGCG
CCGCACCACCGCATCGGCGTGCGCATCCACCACGCCGACGACAGCGGCCACCTGCGCCGCCCCGGCGAGGAA
GTCGACAACCTCGACAAGACCTATACCGGCCAGCTCACCTGGCTCGGCATCGAGGCTACCGGCGATGCCTAC
AACTATCGTTCGAGCATGCCGCTGAACTACTGGGCCAGCGCCACCTGGCTGACCGGCGACCGCGACAACCTG
ACCACCACCACGGTCGACGACCGGCGCATCGCCACCGGCAAGCAGAGCGGCGACGTCAATGCCTTCGGCGTC
GACCTCGGCCTGCGCTGGAACATCGACGAGCAATGGAAGGCCGGCGTCGGCTACGCCCGCGGCAGCGGCGGT
GGCAAGGACGGCGAGGAGCAGTTCCAGCAGACCGGGCTGGAGAGCAATCGCTCCAACTTCACCGGCACCCGC
TCGCGCGTGCACCGCTTCGGCGAAGCCTTCCGCGGCGAACTGAGCAACCTCCAGGCAGCCACCCTGTTCGGC
TCCTGGCAACTGCGCGAGGACTACGACGCGAGCCTGGTCTACCACAAGTTCTGGCGCGTCGACGACGACTCC
GACATCGGCACCAGCGGCATCAACGCCGCCCTGCAACCGGGCGAGAAGGACATCGGCCAGGAACTCGACCTG
GTGGTGACCAAGTACTTCAAGCAAGGCCTGCTGCCGGCCTCGATGAGCCAGTACGTCGACGAGCCCTCGGCG
CTGATCCGCTTCCGCGGCGGCCTGTTCAAGCCGGGCGACGCCTACGGGCCGGGCACCGACTCGACCATGCAC
CGCGCCTTCGTCGACTTCATCTGGCGCTTCTGA
Translation:
MNSSRSVNPRPSFAPRALSLAIALLLGAPAFAANSGEAPKNFGLDVKITGESENDRDLGTAPGGTLNDIGID
LRPWAFGQWGDWSAYFMGQAVAATDTIETDTLQSDTDDGNNSRNDGREPDKSYLAAREFWVDYAGLTAYPGE
HLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFNEYRTDLDELAPEDKDRTHVFGDISTQWA
PHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNL
TTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTR
SRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDL
VVTKYFKQGLLPASMSQYVDEPSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF*
AnnotationID:729GeneID:720
AnnotatorUID: danlee
Modification Date/Time: 2006-03-11 16:04:37
Gene Name:algE
Confidence Code:1
GeneProduct:Alginate production outer membrane protein AlgE precursor
Cell Localization:(6) Outer membrane protein
Synonyms:
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:alginate biosynthesis protein AlgE
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Adaptation, protection; Membrane proteins
EC Number:
Status:ACTIVE
Pathway:
Alginate biosynthesis.
Homology:
>gb|AAN66908.1|AE016319_4 (AE016778) outer membrane protein AlgE [Pseudomonas putida KT2440]
          Length = 492

 Score =  697 bits (1799), Expect = 0.0
 Identities = 338/496 (68%), Positives = 392/496 (79%), Gaps = 16/496 (3%)

>gb|AAO54764.1| (AE016860) alginate biosynthesis protein AlgE [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 493

 Score =  571 bits (1471), Expect = e-162
 Identities = 275/492 (55%), Positives = 346/492 (70%), Gaps = 28/492 (5%)
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:1443
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18585
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34130
Author/Investigator(s): Chu L, May TB, Chakrabarty AM, Misra TK.
Title: Nucleotide sequence and expression of the algE gene involved in alginate biosynthesis by Pseudomonas aeruginosa.
PubMed: 1743507
MedLine:
Source:
Gene. 1991 Oct 30;107(1):1-10.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1743507
Homologs By Global Alignment
Gene ID:720

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1247 PA3544_tr translation of PA3544 490 99.79 99.99 0 2625.0
47398 gb|AAG06932.1|AE004775_3 (AE004775) Alginate production outer membrane protein AlgE precursor [Pseudomonas aeruginosa PAO1] 490 99.79 99.99 0 2625.0
47399 gb|AAA25699.1| (M37181) alg76 precursor [Pseudomonas aeruginosa] 490 99.59 99.79 0 2619.0
47400 gb|AAN66908.1|AE016319_4 (AE016778) outer membrane protein AlgE [Pseudomonas putida KT2440] 502 67.52 78.48 22 1814.0
47401 gb|AAO54764.1| (AE016860) alginate biosynthesis protein AlgE [Pseudomonas syringae pv. tomato str. DC3000] 509 54.81 68.76 35 1492.0
GC ORFID: 43722How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3544Glimmer Score:
Start: 3364251Stop: 3365723
Length: 1473
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3544 translation of PA3544Homolog Bit Score 1015.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4995 (ORF: BLASTX 568.0), t_PA3544 (ORF: GLIMMER)
GC ORF Sequence
ATGAACAGCTCCCGTTCCGTCAACCCGCGGCCGTCCTTCGCGCCGCGCGCCCTGTCCCTGGCCATCGCCCTG
CTGCTCGGCGCGCCGGCGTTCGCCGCCAACAGCGGCGAGGCGCCGAAGAACTTCGGCCTGGACGTGAAGATC
ACCGGCGAATCGGAAAACGATCGCGACCTCGGCACCGCTCCCGGCGGCACCCTCAACGACATCGGTATCGAC
CTGCGGCCCTGGGCCTTCGGCCAGTGGGGCGACTGGAGCGCCTACTTCATGGGCCAGGCGGTGGCCGCCACC
GACACCATCGAGACCGACACCCTGCAATCGGACACCGACGACGGCAACAACAGCCGCAACGACGGTCGCGAG
CCGGACAAGAGCTACCTCGCCGCACGCGAATTCTGGGTCGACTACGCCGGCCTCACCGCCTACCCCGGCGAG
CACCTGCGCTTCGGCCGCCAGCGCCTGCGGGAAGACAGCGGCCAGTGGCAGGACACCAACATCGAGGCGCTG
AACTGGAGCTTCGAGACCACCCTGCTCAACGCCCATGCCGGGGTCGCCCAGCGTTTCAACGAATACCGCACC
GACCTCGACGAACTGGCTCCGGAGGACAAGGACCGCACCCATGTGTTCGGCGACATCTCCACCCAGTGGGCG
CCGCACCACCGCATCGGCGTGCGCATCCACCACGCCGACGACAGCGGCCACCTGCGCCGCCCCGGCGAGGAA
GTCGACAACCTCGACAAGACCTATACCGGCCAGCTCACCTGGCTCGGCATCGAGGCTACCGGCGATGCCTAC
AACTATCGTTCGAGCATGCCGCTGAACTACTGGGCCAGCGCCACCTGGCTGACCGGCGACCGCGACAACCTG
ACCACCACCACGGTCGACGACCGGCGCATCGCCACCGGCAAGCAGAGCGGCGACGTCAATGCCTTCGGCGTC
GACCTCGGCCTGCGCTGGAACATCGACGAGCAATGGAAGGCCGGCGTCGGCTACGCCCGCGGCAGCGGCGGT
GGCAAGGACGGCGAGGAGCAGTTCCAGCAGACCGGGCTGGAGAGCAATCGCTCCAACTTCACCGGCACCCGC
TCGCGCGTGCACCGCTTCGGCGAAGCCTTCCGCGGCGAACTGAGCAACCTCCAGGCAGCCACCCTGTTCGGC
TCCTGGCAACTGCGCGAGGACTACGACGCGAGCCTGGTCTACCACAAGTTCTGGCGCGTCGACGACGACTCC
GACATCGGCACCAGCGGCATCAACGCCGCCCTGCAACCGGGCGAGAAGGACATCGGCCAGGAACTCGACCTG
GTGGTGACCAAGTACTTCAAGCAAGGCCTGCTGCCGGCCTCGATGAGCCAGTACGTCGACGAGCCCTCGGCG
CTGATCCGCTTCCGCGGCGGCCTGTTCAAGCCGGGCGACGCCTACGGGCCGGGCACCGACTCGACCATGCAC
CGCGCCTTCGTCGACTTCATCTGGCGCTTCTGA