ViewGene
Locus Name:
GeneID:
Location:

GeneID:719
TrivialName: PA14_48010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48010
PAO1 Ortholog Locus:PA1253
Sequence Length:1581
Protein Length:526
Start: 4272317
Stop: 4273897
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04642.1|AE004555_2 (AE004555) probable semialdehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 516/526 (98%), Positives = 521/526 (99%)
Sequence:
ATGCCCAGTATCCTCGGTCACAACTACGTCGGCGGCGCTCGCAGCGCCGCCGGCAACCTCATCCTGCGCAGC
CTCGACGCCGACAGCGGCGAAGCGCTGCCCTACGCCTTCGTCCAGGCCACCGAGGCGGAGGTCGACGCCGCC
GCCCGCGCCGCCGAACGCGCCTATCCACACTACCGGCAACTGTCCGCCACGCGCCGCGCCGGATTCCTCGAG
GCGATCGCCTCGCGCCTCGACGCCCTGGGCGACGACTTCGTCGCCCTGGTCCGTCGCGAGACCGCGCTGCCC
GCCGTACGCATCCAGGGCGAACGGACACGTACCGCCAACCAGTTGCGGCTGTTCGCCGAAGTCCTGCGGCGT
GGCGACTTCCACGGCGCGCGCATCGATCGCGGACAACCCGGGCGTACCCCGCCGCGCCCCGACCTGCGCCAG
TGGCGAATCGGTCTCGGCCCGGTGGCGGTGTTCGGTGCCAGCAACTTCCCGCTGGCCTTTTCCACCGCCGGC
GGCGACAGCGCCGCCGCCCTGGCCGCCGGCTGTCCGGTGGTGGTCAAGGCCCACGGCGGACACATGGCCACA
GCCGAATGCGTGGCCGACGCGATCCTCCAGGCGGCGGCCGACAGCGGCATGCCGGCCGGGGTATTCAACATG
GTCTACGGCAACGGCGTCGGCGAGGCGCTGGTGCGCCATCCGGCCATCCGCGCGGTCGGCTTCACCGGTTCG
CTCAAGGGCGGGCGCGCACTGTGCGACCTGGCAGCGGCGCGGCCGCAGCCGATCCCGGTGTTCGCCGAGATG
AGCAGCATCAATCCGCTGGTGGTGCTCCCCGAAGCCCTGCGCCGGCGCGGCCGGCAGGTGGCGGAGGAGCTG
GCCGCCTCGGTGACGCTCGGCTGCGGCCAGTTCTGCACCAAGCCGGGCCTGGTGCTTGGCCTGCGCTCCCCC
GGCTTCGACGCCTTCGTCGCGGCCCTGGGCGAGGCACTGGCCGCCAGGCCGGCACAGAGCATGCTCAACGCC
GGTACCTTGCGCAGCTATGTCGAAGGACTGCAACGCCTGGAGCGCCATCCCGGCATCCGGCGCCTGGCCGGC
GCGCCACAGGAAGGACGGCAGGCCCATCCGCAGTTGTTCAAGGCCGACGTGGGCCTGTTGCTGGAAGGCGAC
GAACTGCTCCAGGATGAGGTGTTCGGCCCGGCCACCGTGGTCGTCGAGGCAGCCGACGAGGAACAGCTTGCC
CGCGCGCTGGACAACCTGCACGGCCAGTTGACGGCGACCCTGATCGGCGAAGCGGAAGACCTCGCGGCGTTC
GCCGGGCTGGTCCCGCTGCTCGAAGGCAAGGCCGGGCGCCTGCTATTCAACGGCTATCCGACCGGCGTCGAG
GTATGCGACGCCATGGTCCACGGCGGCCCCTACCCGGCCACCTCCGACGCTCGCGGCACCTCGGTGGGAACC
CTGGCCATCGAACGCTTCCTGCGCCCGCTGTGCTACCAGGACTACCCCGACAGCCTGCTCCCGGACGCCCTG
AAGAACGCCAACCCGCTGGGCCTGCTGCGCCTGGTCGATGGCCGGAGCACGCGCGAGGCCCTGGATTGA
Translation:
MPSILGHNYVGGARSAAGNLILRSLDADSGEALPYAFVQATEAEVDAAARAAERAYPHYRQLSATRRAGFLE
AIASRLDALGDDFVALVRRETALPAVRIQGERTRTANQLRLFAEVLRRGDFHGARIDRGQPGRTPPRPDLRQ
WRIGLGPVAVFGASNFPLAFSTAGGDSAAALAAGCPVVVKAHGGHMATAECVADAILQAAADSGMPAGVFNM
VYGNGVGEALVRHPAIRAVGFTGSLKGGRALCDLAAARPQPIPVFAEMSSINPLVVLPEALRRRGRQVAEEL
AASVTLGCGQFCTKPGLVLGLRSPGFDAFVAALGEALAARPAQSMLNAGTLRSYVEGLQRLERHPGIRRLAG
APQEGRQAHPQLFKADVGLLLEGDELLQDEVFGPATVVVEAADEEQLARALDNLHGQLTATLIGEAEDLAAF
AGLVPLLEGKAGRLLFNGYPTGVEVCDAMVHGGPYPATSDARGTSVGTLAIERFLRPLCYQDYPDSLLPDAL
KNANPLGLLRLVDGRSTREALD*
AnnotationID:728GeneID:719
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 10:10:45
Gene Name:
Confidence Code:3
GeneProduct:putative semialdehyde dehydrogenase
Cell Localization:()
Synonyms:PA1253
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1012
Secondary Functional Category(ies):energy production and conversion
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68193.1|AE016452_6 (AE016783) aldehyde dehydrogenase family protein [Pseudomonas
           putida KT2440]
          Length = 526

 Score =  745 bits (1924), Expect = 0.0
 Identities = 381/519 (73%), Positives = 433/519 (83%), Gaps = 1/519 (0%)

>gb|AAO56801.1| (AE016868) aldehyde dehydrogenase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 527

 Score =  716 bits (1848), Expect = 0.0
 Identities = 360/519 (69%), Positives = 424/519 (81%), Gaps = 1/519 (0%)

>gb|AAM42514.1| (AE012441) ketoglutarate semialdehyde dehydrogenase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 526

 Score =  503 bits (1296), Expect = e-142
 Identities = 275/522 (52%), Positives = 348/522 (66%), Gaps = 5/522 (0%)








 
Structural Features:
COG1012, PutA, NAD-dependent aldehyde dehydrogenases 
[Energy production and conversion]
CD-Length = 472 residues,  99.6% aligned
Score =  205 bits (523), Expect = 9e-54
Identities = 136/501 (27%), Positives = 198/501 (39%), Gaps = 40/501 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1441




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18583




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37525




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:719_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:719
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1245
                           PA1253_tr
                           translation of PA1253
                           526
                           98.09
                           99.04
                           0
                           2627.0
     

     
     
47374
                           gb|AAG04642.1|AE004555_2
                           (AE004555) probable semialdehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
                           526
                           98.09
                           99.04
                           0
                           2627.0
     

     
     
1246
                           PA2217_tr
                           translation of PA2217
                           527
                           76.85
                           85.19
                           1
                           2049.0
     

     
     
47375
                           gb|AAG05605.1|AE004648_4
                           (AE004648) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
                           527
                           76.85
                           85.19
                           1
                           2049.0
     

     
     
47376
                           gb|AAN68193.1|AE016452_6
                           (AE016783) aldehyde dehydrogenase family protein [Pseudomonas putida KT2440]
                           529
                           72.21
                           82.23
                           6
                           1920.0
     

     






      

          
GC ORFID: 43721How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1253Glimmer Score: 

          
Start: 681592Stop: 680012

          
Length: 1581


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1253 translation of PA1253Homolog Bit Score 1016.0

          
Other Homologs:  t_PA2217 (ORF: BLASTX 793.0), t_PA1253 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCAGTATCCTCGGTCACAACTACGTCGGCGGCGCTCGCAGCGCCGCCGGCAACCTCATCCTGCGCAGC 
CTCGACGCCGACAGCGGCGAAGCGCTGCCCTACGCCTTCGTCCAGGCCACCGAGGCGGAGGTCGACGCCGCC 
GCCCGCGCCGCCGAACGCGCCTATCCACACTACCGGCAACTGTCCGCCACGCGCCGCGCCGGATTCCTCGAG 
GCGATCGCCTCGCGCCTCGACGCCCTGGGCGACGACTTCGTCGCCCTGGTCCGTCGCGAGACCGCGCTGCCC 
GCCGTACGCATCCAGGGCGAACGGACACGTACCGCCAACCAGTTGCGGCTGTTCGCCGAAGTCCTGCGGCGT 
GGCGACTTCCACGGCGCGCGCATCGATCGCGGACAACCCGGGCGTACCCCGCCGCGCCCCGACCTGCGCCAG 
TGGCGAATCGGTCTCGGCCCGGTGGCGGTGTTCGGTGCCAGCAACTTCCCGCTGGCCTTTTCCACCGCCGGC 
GGCGACAGCGCCGCCGCCCTGGCCGCCGGCTGTCCGGTGGTGGTCAAGGCCCACGGCGGACACATGGCCACA 
GCCGAATGCGTGGCCGACGCGATCCTCCAGGCGGCGGCCGACAGCGGCATGCCGGCCGGGGTATTCAACATG 
GTCTACGGCAACGGCGTCGGCGAGGCGCTGGTGCGCCATCCGGCCATCCGCGCGGTCGGCTTCACCGGTTCG 
CTCAAGGGCGGGCGCGCACTGTGCGACCTGGCAGCGGCGCGGCCGCAGCCGATCCCGGTGTTCGCCGAGATG 
AGCAGCATCAATCCGCTGGTGGTGCTCCCCGAAGCCCTGCGCCGGCGCGGCCGGCAGGTGGCGGAGGAGCTG 
GCCGCCTCGGTGACGCTCGGCTGCGGCCAGTTCTGCACCAAGCCGGGCCTGGTGCTTGGCCTGCGCTCCCCC 
GGCTTCGACGCCTTCGTCGCGGCCCTGGGCGAGGCACTGGCCGCCAGGCCGGCACAGAGCATGCTCAACGCC 
GGTACCTTGCGCAGCTATGTCGAAGGACTGCAACGCCTGGAGCGCCATCCCGGCATCCGGCGCCTGGCCGGC 
GCGCCACAGGAAGGACGGCAGGCCCATCCGCAGTTGTTCAAGGCCGACGTGGGCCTGTTGCTGGAAGGCGAC 
GAACTGCTCCAGGATGAGGTGTTCGGCCCGGCCACCGTGGTCGTCGAGGCAGCCGACGAGGAACAGCTTGCC 
CGCGCGCTGGACAACCTGCACGGCCAGTTGACGGCGACCCTGATCGGCGAAGCGGAAGACCTCGCGGCGTTC 
GCCGGGCTGGTCCCGCTGCTCGAAGGCAAGGCCGGGCGCCTGCTATTCAACGGCTATCCGACCGGCGTCGAG 
GTATGCGACGCCATGGTCCACGGCGGCCCCTACCCGGCCACCTCCGACGCTCGCGGCACCTCGGTGGGAACC 
CTGGCCATCGAACGCTTCCTGCGCCCGCTGTGCTACCAGGACTACCCCGACAGCCTGCTCCCGGACGCCCTG 
AAGAACGCCAACCCGCTGGGCCTGCTGCGCCTGGTCGATGGCCGGAGCACGCGCGAGGCCCTGGATTGA