ViewGene
Locus Name:
GeneID:
Location:

GeneID:7177
TrivialName: PA14_07480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07480
PAO1 Ortholog Locus:
Sequence Length:1686
Protein Length:561
Start: 642266
Stop: 640581
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAL25965.1| (AY057439) group II intron-associated open reading frame [Azotobacter vinelandii]
Identities = 305/542 (56%), Positives = 381/542 (70%), Gaps = 7/542 (1%)
Sequence:
ATGAAAGAACTCAGCCCATCGGCCGGGTCTGCGCTTTCCGGCGCTCCGCAGCAGTGGCACGACATCGACTGG
TGTCGGGTCCAGCGGAATGTCCGGGGAATGCAGGTACGGATTGCGAAGGCTTGTCGGGAAGGCAAATGGCGC
AGGGTGAAGGCCCTACAACGGATGCTGACCCGCTCGACGTCGGCCAGGTACCTGGCTGTACGGAGAGTCACT
GAAAACCAGGGCAAGCGCACGGCGGGAGTCGACCGCGTGCTCTGGGATACGCCTGACACCAAGTGGAAAGCG
GCACAAGGGTTGAAAAGGCGCGGGTACCAACCTCGGCCTCTACGGCGAGTGTTCATCCCGAAGTCGAACGGA
AAGGAGCGCCCCCTGGGTATCCCGACCATGACTGACAGGGCAATGCAGGCACTCTACCTGCTCGCTCTGTCG
CCCATTGCAGAAACCACCGGCGATCCGAACAGCTATGGCTTCAGGATCGAGCGATCCACGGCGGATGCAATG
TCCCAGTTGTTCGTTTGCCTATCCGGAAAGGCTTCGGCCCAATGGATACTGGAGGCGGACATACAAGGGTGT
TTTGACCACATCAATCATGACTGGCTACTGAACCATGTCCCCACGGACAAGGTGATCCTCCGGAAATGGTTG
AAGGCCGGCGTGATCCACAAAGGCCAGCTCCAGGCAACGGATGCTGGAACACCTCAAGGCGGAATCATCTCG
CCTACTTTGGCAAACATGGTGCTCGATGGCCTGGAATCACAGCTCAAGCGACACCTGGGCGTGACAAGGGCG
AAGAAGCTGAAACTCAATGTGGTGCGCTATGCGGACGACTTCGTCATCACCGGTGTCTCTCCCGAGGTACTG
GAGAAAGAAGTCAAACCCTGGGTAGAGCAGTTCCTGGCGGTACGCGGGCTGCAGCTCTCTCTGGAGAAAACG
CGGATCGCCCACATAGATCAGGGCTTCGACTTCCTCGGTTGGAACTTCCGCAAGTACAACGGGAAGCTTCTG
ATCAAACCCAGCCAGAAGAACGCGAAAGCGTTCTACGGCAAGGTGAAGGAGGTCATCGAAACCAGCAGGACG
GCAAGGCAAGAGGACTTGATCCGAACGCTGAATCCGATTCTGCGCGGCTGGGCGCTGTATCACCAGCCAGTG
GTTGCCAAGCAAACGTTCAGCCGCATGGACAACAGAGTGTTTCTCAAGCTCTGGCGTTGGGCGAAACGGCGG
CACCCGAACAAGTCACTGGATTGGATCAGGAGGCGATATTTCCGGATTCACGGGGACAAGACTTGGGTGTTC
GCTACCACGGTGCTGGAAAGCAACGGTAAGAAACGGGAGGTCGCGCTGTACTCGCTGGCGAGCACGCCGATT
GAGCGACATAGGAAGGTGAGTGGGGAATACAACCCCTACGATCCAGCCATGGAAGCAATAGGTGAAAAACTG
CGAACGGAACGGATGTTGAAAAAGCTGAAGTACCGAACTCAGATCAGAAACCTATACCTCTCCCAGAAGGGG
CTCTGCTCGCTCTGCAACCAACCGATAACCAGGGAAACCGGGTGGCACGACCACCACATCCTCTATCGCTCA
CAAGGCGGTGGAGACTCCCTGGAGAACCGGGTACTATTGCACCCCGCTTGCCACCAGCAACTCCATGCTCGT
GGTCTGACAGTAAGCAAGCCGGCCCGTTAG
Translation:
MKELSPSAGSALSGAPQQWHDIDWCRVQRNVRGMQVRIAKACREGKWRRVKALQRMLTRSTSARYLAVRRVT
ENQGKRTAGVDRVLWDTPDTKWKAAQGLKRRGYQPRPLRRVFIPKSNGKERPLGIPTMTDRAMQALYLLALS
PIAETTGDPNSYGFRIERSTADAMSQLFVCLSGKASAQWILEADIQGCFDHINHDWLLNHVPTDKVILRKWL
KAGVIHKGQLQATDAGTPQGGIISPTLANMVLDGLESQLKRHLGVTRAKKLKLNVVRYADDFVITGVSPEVL
EKEVKPWVEQFLAVRGLQLSLEKTRIAHIDQGFDFLGWNFRKYNGKLLIKPSQKNAKAFYGKVKEVIETSRT
ARQEDLIRTLNPILRGWALYHQPVVAKQTFSRMDNRVFLKLWRWAKRRHPNKSLDWIRRRYFRIHGDKTWVF
ATTVLESNGKKREVALYSLASTPIERHRKVSGEYNPYDPAMEAIGEKLRTERMLKKLKYRTQIRNLYLSQKG
LCSLCNQPITRETGWHDHHILYRSQGGGDSLENRVLLHPACHQQLHARGLTVSKPAR*
AnnotationID:7177GeneID:7177
AnnotatorUID: danlee
Modification Date/Time: 2005-10-05 15:03:03
Gene Name:
Confidence Code:3
GeneProduct:putative reverse transcriptase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3344, pfam00078
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|68531626|gb|EAN54587.1|  RNA-directed DNA polymerase [Ralstonia metallidurans CH34]
     Length=571
     Score =  783 bits (2021),  Expect = 0.0
     Identities = 380/563 (67%), Positives = 449/563 (79%), Gaps = 4/563 (0%)

gi|68526281|gb|EAN49254.1|  RNA-directed DNA polymerase [Ralstonia metallidurans CH34]
     Length=566
     Score =  762 bits (1967),  Expect = 0.0
     Identities = 373/563 (66%), Positives = 439/563 (77%), Gaps = 4/563 (0%)

gi|32028738|ref|ZP_00131874.1|  COG3344: Retron-type reverse transcriptase [Haemophilus 
somnus 2336]
     Length=575
     Score =  659 bits (1700),  Expect = 0.0
     Identities = 318/566 (56%), Positives = 405/566 (71%), Gaps = 9/566 (1%)






 
Structural Features:
COG3344, Retron-type reverse transcriptase [DNA replication, recombination, and repair].
             CD-Length = 328 residues,  99.1% aligned
             Score =  151 bits (382), Expect = 2e-37

pfam00078, RVT, Reverse transcriptase (RNA-dependent DNA polymerase). A reverse transcriptase 
gene is usually indicative of a mobile element such as a retrotransposon or retrovirus.
             CD-Length = 200 residues, 100.0% aligned
             Score =  113 bits (285), Expect = 4e-26






   
Genomic Context:






   
Comment:


















    ReferenceID:13992




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31423




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:7177
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
203117
                           gb|AAL25965.1|
                           (AY057439) group II intron-associated open reading frame [Azotobacter vinelandii]
                           589
                           53.82
                           67.23
                           54
                           1598.0
     

     
     
203118
                           gb|AAC70140.1|
                           (AF074613) unknown [Escherichia coli O157:H7]
                           576
                           51.56
                           67.36
                           17
                           1534.0
     

     
     
203119
                           dbj|BAA31792.1|
                           (AB011549) reverse transcriptase [Escherichia coli]
                           576
                           51.56
                           67.36
                           17
                           1534.0
     

     
     
203126
                           gb|AAO77404.1|
                           (AE016935) putative reverse transcriptase [Bacteroides thetaiotaomicron VPI-5482]
                           571
                           50.08
                           63.92
                           29
                           1358.0
     

     
     
203120
                           dbj|BAC08713.1|
                           (AP005372) reverse transcriptase [Thermosynechococcus elongatus BP-1]
                           580
                           49.48
                           65.86
                           35
                           1489.0
     

     






      

          
GC ORFID: 50179How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 6443609Stop: 6441924

          
Length: 1686


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAAAGAACTCAGCCCATCGGCCGGGTCTGCGCTTTCCGGCGCTCCGCAGCAGTGGCACGACATCGACTGG 
TGTCGGGTCCAGCGGAATGTCCGGGGAATGCAGGTACGGATTGCGAAGGCTTGTCGGGAAGGCAAATGGCGC 
AGGGTGAAGGCCCTACAACGGATGCTGACCCGCTCGACGTCGGCCAGGTACCTGGCTGTACGGAGAGTCACT 
GAAAACCAGGGCAAGCGCACGGCGGGAGTCGACCGCGTGCTCTGGGATACGCCTGACACCAAGTGGAAAGCG 
GCACAAGGGTTGAAAAGGCGCGGGTACCAACCTCGGCCTCTACGGCGAGTGTTCATCCCGAAGTCGAACGGA 
AAGGAGCGCCCCCTGGGTATCCCGACCATGACTGACAGGGCAATGCAGGCACTCTACCTGCTCGCTCTGTCG 
CCCATTGCAGAAACCACCGGCGATCCGAACAGCTATGGCTTCAGGATCGAGCGATCCACGGCGGATGCAATG 
TCCCAGTTGTTCGTTTGCCTATCCGGAAAGGCTTCGGCCCAATGGATACTGGAGGCGGACATACAAGGGTGT 
TTTGACCACATCAATCATGACTGGCTACTGAACCATGTCCCCACGGACAAGGTGATCCTCCGGAAATGGTTG 
AAGGCCGGCGTGATCCACAAAGGCCAGCTCCAGGCAACGGATGCTGGAACACCTCAAGGCGGAATCATCTCG 
CCTACTTTGGCAAACATGGTGCTCGATGGCCTGGAATCACAGCTCAAGCGACACCTGGGCGTGACAAGGGCG 
AAGAAGCTGAAACTCAATGTGGTGCGCTATGCGGACGACTTCGTCATCACCGGTGTCTCTCCCGAGGTACTG 
GAGAAAGAAGTCAAACCCTGGGTAGAGCAGTTCCTGGCGGTACGCGGGCTGCAGCTCTCTCTGGAGAAAACG 
CGGATCGCCCACATAGATCAGGGCTTCGACTTCCTCGGTTGGAACTTCCGCAAGTACAACGGGAAGCTTCTG 
ATCAAACCCAGCCAGAAGAACGCGAAAGCGTTCTACGGCAAGGTGAAGGAGGTCATCGAAACCAGCAGGACG 
GCAAGGCAAGAGGACTTGATCCGAACGCTGAATCCGATTCTGCGCGGCTGGGCGCTGTATCACCAGCCAGTG 
GTTGCCAAGCAAACGTTCAGCCGCATGGACAACAGAGTGTTTCTCAAGCTCTGGCGTTGGGCGAAACGGCGG 
CACCCGAACAAGTCACTGGATTGGATCAGGAGGCGATATTTCCGGATTCACGGGGACAAGACTTGGGTGTTC 
GCTACCACGGTGCTGGAAAGCAACGGTAAGAAACGGGAGGTCGCGCTGTACTCGCTGGCGAGCACGCCGATT 
GAGCGACATAGGAAGGTGAGTGGGGAATACAACCCCTACGATCCAGCCATGGAAGCAATAGGTGAAAAACTG 
CGAACGGAACGGATGTTGAAAAAGCTGAAGTACCGAACTCAGATCAGAAACCTATACCTCTCCCAGAAGGGG 
CTCTGCTCGCTCTGCAACCAACCGATAACCAGGGAAACCGGGTGGCACGACCACCACATCCTCTATCGCTCA 
CAAGGCGGTGGAGACTCCCTGGAGAACCGGGTACTATTGCACCCCGCTTGCCACCAGCAACTCCATGCTCGT 
GGTCTGACAGTAAGCAAGCCGGCCCGTTAG