ViewGene

Locus Name:
GeneID:
Location:

GeneID:717
TrivialName: PA14_67770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67770
PAO1 Ortholog Locus:PA5131
Sequence Length:1548
Protein Length:515
Start: 6050297
Stop: 6051844
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08516.1|AE004926_6 (AE004926) phosphoglycerate mutase [Pseudomonas aeruginosa PAO1]
Identities = 512/515 (99%), Positives = 513/515 (99%)
Sequence:
ATGACTGCCACGCCCAAACCCCTGGTCCTGATCATCCTGGACGGCTTCGGCCACAGCGAAAGCCCTGACTAC
AACGCCATCTACGCCGCGAAGAAGCCGGTCTGGGATCGCCTCCTGGCGACCCAGCCGCACGGCCTGATCTCC
GGCTCCGGCATGGACGTCGGCCTGCCCGACGGCCAGATGGGCAACTCCGAGGTCGGCCACATGAACCTCGGC
GCAGGCCGCGTGGTGTACCAGGACTTCACCCGCGTCACCAAGGCCATCCGCGACGGCGAATTCTTCGAAAAC
CCGGTGATCGCCGCGGCGGTCGACAAGGCCGTCGCCGCCGACAAGGCGGTGCACATCCTCGGCCTGCTCTCT
CCGGGCGGCGTACACAGCCATGAAGACCACCTGGTGGCGATGGCGCAGATGGCCGCCAGGCGCGGCGCCGGC
AAGATCTACCTGCATGCCTTCCTGGATGGCCGCGATACCCCGCCGAAAAGCGCGCAACCGTCGCTGGAGCGT
CTCGACGCCACCTTCGCCGGGCTCGGCAAGGGCCGCATCGCCTCGATCATCGGCCGCTATTTCGCGATGGAC
CGCGACAACCGCTGGGACCGCGTCCAGGCCGCCTATGAACTGATCGTCGACGGCAAGGCCGAGTTCACCGCC
GACTCCTCGGTGGCAGCCCTCGAGGCCGCCTACGCCCGCGGCGAGAGCGACGAATTCGTCAAGGCCACCGCG
GTGGTCCCGGCCGGCGCCGAAGCGGTGCGGGTCGAGGATGGCGACGCGGTGATCTTCATGAACTTCCGCGCC
GACCGCGCCCGCGAACTGAGCCGCGCCTTCGTCGAGCCGGCATTCAAGGAATTCCCCCGCGAGCAGGCCCCG
CAGCTGGCAGGCTTCGTCATGCTGACCCAGTACGCGGCGAGCATCCCGGCGCCCTGCGCCTTCCCGCCGGAG
CCGCTGACCAACGTCCTCGGCGAATACCTGGCCAAGCATGGCAAGACCCAGCTGCGCATCGCCGAGACCGAG
AAGTACGCCCACGTGACCTTCTTCTTCTCCGGCGGCCGCGAGGAACCCTACGAAGGCGAGGAGCGCATCCTG
ATCCCCTCGCCGAAGGTCGCCACCTACGACCTGCAGCCCGAGATGAGCGCGCCGGAAGTCACCGACCGTATC
GTCGAGGCCATCGAGCAACAACGCTACGATGTGATCGTGGTCAACTACGCCAACGGCGACATGGTCGGCCAC
ACCGGCGTGTTCGAGGCCGCGGTCAAGGCCGTGGAGTGCCTGGACACCTGCATGGGGCGCATCGTCGAGGCG
CTGGACAAGGTCGGCGGCGAAGCCCTGATCACCGCCGACCACGGCAATGTCGAGCAGATGGAAGACGAGTCC
ACCGGCCAGGCGCACACCGCGCACACCTGCGAACCGGTGCCCTTCGTCTACGTCGGCAAGCGCAAGCTGAGC
ATCCGCGAAGGCGGCGTGCTGGCCGACGTGGCGCCGACCATGCTGACCCTCATGGGGCTGGAGCAGCCGGCG
GAAATGACCGGTCGCAGCATCGTCACCCTCGGCTGA
Translation:
MTATPKPLVLIILDGFGHSESPDYNAIYAAKKPVWDRLLATQPHGLISGSGMDVGLPDGQMGNSEVGHMNLG
AGRVVYQDFTRVTKAIRDGEFFENPVIAAAVDKAVAADKAVHILGLLSPGGVHSHEDHLVAMAQMAARRGAG
KIYLHAFLDGRDTPPKSAQPSLERLDATFAGLGKGRIASIIGRYFAMDRDNRWDRVQAAYELIVDGKAEFTA
DSSVAALEAAYARGESDEFVKATAVVPAGAEAVRVEDGDAVIFMNFRADRARELSRAFVEPAFKEFPREQAP
QLAGFVMLTQYAASIPAPCAFPPEPLTNVLGEYLAKHGKTQLRIAETEKYAHVTFFFSGGREEPYEGEERIL
IPSPKVATYDLQPEMSAPEVTDRIVEAIEQQRYDVIVVNYANGDMVGHTGVFEAAVKAVECLDTCMGRIVEA
LDKVGGEALITADHGNVEQMEDESTGQAHTAHTCEPVPFVYVGKRKLSIREGGVLADVAPTMLTLMGLEQPA
EMTGRSIVTLG*
AnnotationID:726GeneID:717
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 12:12:46
Gene Name:pgm
Confidence Code:2
GeneProduct:phosphoglycerate mutase
Cell Localization:()
Synonyms:gpmA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:2,3-biphosphoglycerate-independent phosphoglycerate mutase
Functional Category Confidence Code:5
COGs:COG0696,pfam06415
Secondary Functional Category(ies):
EC Number:5.4.2.1
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70621.1|AE016705_1 (AE016793) 2,3-biphosphoglycerate-independent phosphoglycerate
           mutase [Pseudomonas putida KT2440]
          Length = 511

 Score =  860 bits (2223), Expect = 0.0
 Identities = 429/512 (83%), Positives = 467/512 (91%), Gaps = 4/512 (0%)

>gb|AAO58753.1| (AE016875) phosphoglycerate mutase,
           2,3-bisphosphoglycerate-independent [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 510

 Score =  808 bits (2087), Expect = 0.0
 Identities = 408/512 (79%), Positives = 448/512 (87%), Gaps = 5/512 (0%)

>gb|AAA77677.1| (U12776) phosphoglyceromutase [Pseudomonas syringae]
          Length = 510

 Score =  808 bits (2087), Expect = 0.0
 Identities = 408/512 (79%), Positives = 448/512 (87%), Gaps = 5/512 (0%)

Structural Features:
COG0696, GpmI, Phosphoglyceromutase [Carbohydrate transport and metabolism]
CD-Length = 509 residues, 100.0% aligned
Score =  755 bits (1951), Expect = 0.0
Identities = 312/512 (60%), Positives = 386/512 (75%), Gaps = 3/512 (0%)

pfam06415, iPGM_N, BPG-independent PGAM N-terminus (iPGM_N).
CD-Length = 359 residues, 100.0% aligned
Score =  561 bits (1447), Expect = 7e-161
Identities = 216/361 (59%), Positives = 263/361 (72%), Gaps = 2/361 (0%)
Genomic Context:
Comment:
other possible gene name: yibO
ReferenceID:1437
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18579
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34931
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:717_cdd.html
URL:
ReferenceID:35790
Author/Investigator(s): Leyva-Vazquez MA, Setlow P.
Title: Cloning and nucleotide sequences of the genes encoding triose phosphate isomerase, phosphoglycerate mutase, and enolase from Bacillus subtilis.
PubMed: 8021172
MedLine:
Source:
J Bacteriol. 1994 Jul;176(13):3903-10.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8021172
ReferenceID:35791
Author/Investigator(s): Yomano LP, Scopes RK, Ingram LO.
Title: Cloning, sequencing, and expression of the Zymomonas mobilis phosphoglycerate mutase gene (pgm) in Escherichia coli.
PubMed: 8320209
MedLine:
Source:
J Bacteriol. 1993 Jul;175(13):3926-33.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8320209
Homologs By Global Alignment
Gene ID:717

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1243 PA5131_tr translation of PA5131 515 99.41 99.61 0 2633.0
47278 gb|AAG08516.1|AE004926_6 (AE004926) phosphoglycerate mutase [Pseudomonas aeruginosa PAO1] 515 99.41 99.61 0 2633.0
47279 gb|AAN70621.1|AE016705_1 (AE016793) 2,3-biphosphoglycerate-independent phosphoglycerate mutase [Pseudomonas putida KT2440] 515 83.30 90.67 4 2222.0
47280 gb|AAO58753.1| (AE016875) phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent [Pseudomonas syringae pv. tomato str. DC3000] 515 79.22 86.99 5 2087.0
47281 gb|AAA77677.1| (U12776) phosphoglyceromutase [Pseudomonas syringae] 515 79.22 86.99 5 2087.0
GC ORFID: 43719How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5131Glimmer Score:
Start: 5313982Stop: 5315529
Length: 1548
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5131 translation of PA5131Homolog Bit Score 1018.0
Other Homologs: t_PA5131 (ORF: GLIMMER)
GC ORF Sequence
ATGACTGCCACGCCCAAACCCCTGGTCCTGATCATCCTGGACGGCTTCGGCCACAGCGAAAGCCCTGACTAC
AACGCCATCTACGCCGCGAAGAAGCCGGTCTGGGATCGCCTCCTGGCGACCCAGCCGCACGGCCTGATCTCC
GGCTCCGGCATGGACGTCGGCCTGCCCGACGGCCAGATGGGCAACTCCGAGGTCGGCCACATGAACCTCGGC
GCAGGCCGCGTGGTGTACCAGGACTTCACCCGCGTCACCAAGGCCATCCGCGACGGCGAATTCTTCGAAAAC
CCGGTGATCGCCGCGGCGGTCGACAAGGCCGTCGCCGCCGACAAGGCGGTGCACATCCTCGGCCTGCTCTCT
CCGGGCGGCGTACACAGCCATGAAGACCACCTGGTGGCGATGGCGCAGATGGCCGCCAGGCGCGGCGCCGGC
AAGATCTACCTGCATGCCTTCCTGGATGGCCGCGATACCCCGCCGAAAAGCGCGCAACCGTCGCTGGAGCGT
CTCGACGCCACCTTCGCCGGGCTCGGCAAGGGCCGCATCGCCTCGATCATCGGCCGCTATTTCGCGATGGAC
CGCGACAACCGCTGGGACCGCGTCCAGGCCGCCTATGAACTGATCGTCGACGGCAAGGCCGAGTTCACCGCC
GACTCCTCGGTGGCAGCCCTCGAGGCCGCCTACGCCCGCGGCGAGAGCGACGAATTCGTCAAGGCCACCGCG
GTGGTCCCGGCCGGCGCCGAAGCGGTGCGGGTCGAGGATGGCGACGCGGTGATCTTCATGAACTTCCGCGCC
GACCGCGCCCGCGAACTGAGCCGCGCCTTCGTCGAGCCGGCATTCAAGGAATTCCCCCGCGAGCAGGCCCCG
CAGCTGGCAGGCTTCGTCATGCTGACCCAGTACGCGGCGAGCATCCCGGCGCCCTGCGCCTTCCCGCCGGAG
CCGCTGACCAACGTCCTCGGCGAATACCTGGCCAAGCATGGCAAGACCCAGCTGCGCATCGCCGAGACCGAG
AAGTACGCCCACGTGACCTTCTTCTTCTCCGGCGGCCGCGAGGAACCCTACGAAGGCGAGGAGCGCATCCTG
ATCCCCTCGCCGAAGGTCGCCACCTACGACCTGCAGCCCGAGATGAGCGCGCCGGAAGTCACCGACCGTATC
GTCGAGGCCATCGAGCAACAACGCTACGATGTGATCGTGGTCAACTACGCCAACGGCGACATGGTCGGCCAC
ACCGGCGTGTTCGAGGCCGCGGTCAAGGCCGTGGAGTGCCTGGACACCTGCATGGGGCGCATCGTCGAGGCG
CTGGACAAGGTCGGCGGCGAAGCCCTGATCACCGCCGACCACGGCAATGTCGAGCAGATGGAAGACGAGTCC
ACCGGCCAGGCGCACACCGCGCACACCTGCGAACCGGTGCCCTTCGTCTACGTCGGCAAGCGCAAGCTGAGC
ATCCGCGAAGGCGGCGTGCTGGCCGACGTGGCGCCGACCATGCTGACCCTCATGGGGCTGGAGCAGCCGGCG
GAAATGACCGGTCGCAGCATCGTCACCCTCGGCTGA