ViewGene

Locus Name:
GeneID:
Location:

GeneID:715
TrivialName: PA14_46860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46860
PAO1 Ortholog Locus:PA1346
Sequence Length:1548
Protein Length:515
Start: 4172793
Stop: 4174340
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04735.1|AE004564_4 (AE004564) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 513/515 (99%), Positives = 514/515 (99%)
Sequence:
ATGTCTCGAAACAATCCTTCGCGTCATTCAATACTCGTCACTTCCAACATAAACGCGGCCAATGATGCGAAT
CGTCTTTCCGAGCTTTGTCGACAACTGGAAATACGCGGCTATCGGCTCTTCCAGGCGCCAAGCCGCAAGGTC
GCCCTGGATTTTCTCGGCAACGCCGCGCACCCCGCCGGCATCCTCCTGCTCGTCGCGGAGCCGACAGGCGAG
AACGAGGCCGCACAATTGTCGGCCCTCGATGAACTCCGCCAGGTCGCGCCGTCCATCCCGCTGTTCCTGTTG
TTTCGTCAACTGCGCATCGAGCAGTTGTCCAGCCAGCTACTGGACGAGGTCCAGGGATGCTTCAACCTGGCC
GCCGGCCCCGCACGCTTCATCGCCGAGCGCATCGACAGCGACCTGCGCGAATGGCGCGCCCCGGCGGGCCCC
AGGCGGCTGCGCGACTATGCCCCGCCGGTCCCGCGCACGCCGGTGAGCGCCCGCTACAACGGCCGCGCACGC
CTCGATCTGGCGCCGGCCAAGCAGTGGCGGATCGGCTCGGGGAGCACCGCGGAGCGCCTGGCGACGCCGCTG
AACGACCTCTCCACGGCCTACCGCAAGACGTCCGCAGGAGCCCCGGCGGCGCACGCCGGCGACATCGCCGAG
GCCTTTCGCCGGGCGCTCTGGGAAGCCGCCGCGCGGCTCGCCAGGGAGGATGGCGATACGTGGTTCTTCGAG
ATACTGCGGGGCAACCCGGGGCCTGGCATCGAGGCCGGCCGGGAGACGCCGGCGAAGCGCTGGCACGGGCTC
GCCGAGACACTCGACAGCAGTCCTCGGCTGGACCCGCTGCGCGTCGCCCTGAGCGCCCCCGGCCTCGATTCG
CGCGGTCGCCCGGCCAGCTTCGGAGTACCCGCCGCGGTGGTCTGCCGCTACCTGCGCCGGCACGGCATCGCC
CCGTTGCGCACCGGCGACTATCGCTTCCTGCTGCTGTTTCCCCAGGGCGCCAGGGCGGAACACGCGCAGCCG
CTGGTGGACAGGCTGTGCGAATTCAAACGCCGGCACGACGACGATGCGCCGCTGAAGCAGGTGTTGCCGGAG
TTGCTCGACAGCTCGCCGCTGTACCGCTACATCGGCCTGCGCGAACTCTGCGCGATGATCCACGAAGCCAGC
CTGCGGCTGCACCTGACCGCCCTCGCCGACGCCGCCGCCAGGGCTGCCGGCCACGCCGCGCTGGCGCCGGCC
ACGGTCTATGGGCACCTGGTCAGGGACGAAACCGAAGCGGTGGCGATCGACAGGCTCGGCGGCCGTGTGGTC
GCCAGCCTGGTCGGCGTCCATCCGGCGGCCACACCGCTGCTATTGCCCGGCGAACGGGTGGCCGAGGAATCG
CCGGCACTGATCGACTACCTGCTGGCCTTGCAGGCCTTCGGCGAGCACTTTCCCGGTTTCGCTCCCGAGTTG
CAGGGCATCGAGATCGATGAGCGCGGCCGCTACCGGGTCCGTTGCGTCAGGCCGGCCGCCCTCGCCCGCGGC
TCCGGCCTGCGCCTGGCCACGCGCCGGCCGGACTGA
Translation:
MSRNNPSRHSILVTSNINAANDANRLSELCRQLEIRGYRLFQAPSRKVALDFLGNAAHPAGILLLVAEPTGE
NEAAQLSALDELRQVAPSIPLFLLFRQLRIEQLSSQLLDEVQGCFNLAAGPARFIAERIDSDLREWRAPAGP
RRLRDYAPPVPRTPVSARYNGRARLDLAPAKQWRIGSGSTAERLATPLNDLSTAYRKTSAGAPAAHAGDIAE
AFRRALWEAAARLAREDGDTWFFEILRGNPGPGIEAGRETPAKRWHGLAETLDSSPRLDPLRVALSAPGLDS
RGRPASFGVPAAVVCRYLRRHGIAPLRTGDYRFLLLFPQGARAEHAQPLVDRLCEFKRRHDDDAPLKQVLPE
LLDSSPLYRYIGLRELCAMIHEASLRLHLTALADAAARAAGHAALAPATVYGHLVRDETEAVAIDRLGGRVV
ASLVGVHPAATPLLLPGERVAEESPALIDYLLALQAFGEHFPGFAPELQGIEIDERGRYRVRCVRPAALARG
SGLRLATRRPD*
AnnotationID:724GeneID:715
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 08:08:57
Gene Name:
Confidence Code:3
GeneProduct:putative lysine decarboxylase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1982,pfam03711
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAL19198.1| (AE008705) lysine decarboxylase 2, constitutive [Salmonella
           typhimurium LT2]
          Length = 713

 Score =  180 bits (457), Expect = 2e-44
 Identities = 94/270 (34%), Positives = 151/270 (55%), Gaps = 1/270 (0%)

>gb|AAN78716.1|AE016755_216 (AE016755) Lysine decarboxylase, constitutive [Escherichia coli
           CFT073]
          Length = 713

 Score =  173 bits (439), Expect = 2e-42
 Identities = 93/270 (34%), Positives = 149/270 (55%), Gaps = 1/270 (0%)

Structural Features:
COG1982, LdcC, Arginine/lysine/ornithine decarboxylases 
[Amino acid transport and metabolism]
CD-Length = 557 residues,  91.2% aligned
Score =  392 bits (1008), Expect = 5e-110
Identities = 157/523 (30%), Positives = 216/523 (41%), Gaps = 37/523 (7%)

pfam03711, OKR_DC_1_C, Orn/Lys/Arg decarboxylase, C-terminal domain.
CD-Length = 135 residues, 100.0% aligned
Score = 86.9 bits (215), Expect = 5e-18
Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 1/135 (0%)

Genomic Context:
Comment:
ReferenceID:1433
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18575
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37444
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:715_cdd.html
URL:
Homologs By Global Alignment
Gene ID:715

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1227 PA1346_tr translation of PA1346 515 99.61 99.80 0 2635.0
46779 gb|AAG04735.1|AE004564_4 (AE004564) hypothetical protein PA1346 [Pseudomonas aeruginosa PAO1] 515 99.61 99.80 0 2635.0
GC ORFID: 43717How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1346Glimmer Score:
Start: 781116Stop: 779569
Length: 1548
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1346 translation of PA1346Homolog Bit Score 1019.0
Other Homologs: t_PA1346 (ORF: GLIMMER)
GC ORF Sequence
ATGTCTCGAAACAATCCTTCGCGTCATTCAATACTCGTCACTTCCAACATAAACGCGGCCAATGATGCGAAT
CGTCTTTCCGAGCTTTGTCGACAACTGGAAATACGCGGCTATCGGCTCTTCCAGGCGCCAAGCCGCAAGGTC
GCCCTGGATTTTCTCGGCAACGCCGCGCACCCCGCCGGCATCCTCCTGCTCGTCGCGGAGCCGACAGGCGAG
AACGAGGCCGCACAATTGTCGGCCCTCGATGAACTCCGCCAGGTCGCGCCGTCCATCCCGCTGTTCCTGTTG
TTTCGTCAACTGCGCATCGAGCAGTTGTCCAGCCAGCTACTGGACGAGGTCCAGGGATGCTTCAACCTGGCC
GCCGGCCCCGCACGCTTCATCGCCGAGCGCATCGACAGCGACCTGCGCGAATGGCGCGCCCCGGCGGGCCCC
AGGCGGCTGCGCGACTATGCCCCGCCGGTCCCGCGCACGCCGGTGAGCGCCCGCTACAACGGCCGCGCACGC
CTCGATCTGGCGCCGGCCAAGCAGTGGCGGATCGGCTCGGGGAGCACCGCGGAGCGCCTGGCGACGCCGCTG
AACGACCTCTCCACGGCCTACCGCAAGACGTCCGCAGGAGCCCCGGCGGCGCACGCCGGCGACATCGCCGAG
GCCTTTCGCCGGGCGCTCTGGGAAGCCGCCGCGCGGCTCGCCAGGGAGGATGGCGATACGTGGTTCTTCGAG
ATACTGCGGGGCAACCCGGGGCCTGGCATCGAGGCCGGCCGGGAGACGCCGGCGAAGCGCTGGCACGGGCTC
GCCGAGACACTCGACAGCAGTCCTCGGCTGGACCCGCTGCGCGTCGCCCTGAGCGCCCCCGGCCTCGATTCG
CGCGGTCGCCCGGCCAGCTTCGGAGTACCCGCCGCGGTGGTCTGCCGCTACCTGCGCCGGCACGGCATCGCC
CCGTTGCGCACCGGCGACTATCGCTTCCTGCTGCTGTTTCCCCAGGGCGCCAGGGCGGAACACGCGCAGCCG
CTGGTGGACAGGCTGTGCGAATTCAAACGCCGGCACGACGACGATGCGCCGCTGAAGCAGGTGTTGCCGGAG
TTGCTCGACAGCTCGCCGCTGTACCGCTACATCGGCCTGCGCGAACTCTGCGCGATGATCCACGAAGCCAGC
CTGCGGCTGCACCTGACCGCCCTCGCCGACGCCGCCGCCAGGGCTGCCGGCCACGCCGCGCTGGCGCCGGCC
ACGGTCTATGGGCACCTGGTCAGGGACGAAACCGAAGCGGTGGCGATCGACAGGCTCGGCGGCCGTGTGGTC
GCCAGCCTGGTCGGCGTCCATCCGGCGGCCACACCGCTGCTATTGCCCGGCGAACGGGTGGCCGAGGAATCG
CCGGCACTGATCGACTACCTGCTGGCCTTGCAGGCCTTCGGCGAGCACTTTCCCGGTTTCGCTCCCGAGTTG
CAGGGCATCGAGATCGATGAGCGCGGCCGCTACCGGGTCCGTTGCGTCAGGCCGGCCGCCCTCGCCCGCGGC
TCCGGCCTGCGCCTGGCCACGCGCCGGCCGGACTGA